Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ---------                                                                                            ---------                                                                                     --------->LBD16                                                                                    --------->ANAC46                                                                                   --------->HSFB2a(2)                                                                                   <---------HSFB2a(2)                                                                                   <---------LBD16                                                                               <----------DOF2   <------ZmHOX2a(1)                                                        <---------ARR11(3) ---------LBD16                                                             --------->ARR11(3)      < >YAB1                  --------->HSFB2a(2)     <------ZmHOX2a(1)  ---------->DOF2<---------ANAC46  =   aaccaggaaaccattgaaacccatctcgagaattcagaactaaaaacagaggaaacaaaaacaagttgaaaaagaagagacctttcgcggaagtaagcaa  10491300                                      --------->ANAC46                                   <---------REM1(2)                             <---------ANAC55(2)                             --------->ANAC55(1)                             --------->ANAC58                             --------->ANAC46                ----------->RAV1(1)                             --------->ANAC55(2)      --------->WRKY12                             --------->ANAC58         --------->WRKY38(1)                            <---------LBD16          <---------WOX13(1)                           --------->MYB52(1)        <--------P >ANAC58                  <------ZmHOX2a(2)         <-------GAMYB                              ------ >ANAC58                 <---------ARR11(3)        <---------MYB46(3)       <----------DOF2  -------- ------ZmHOX2a(1)        --------->ARR11(3)     <---------ZAT2              --------->TOE2(3)<------- ================================HOX2a_HOX2a    --------->ZAT2  --------->TOE2(3) <---------ICU4-----   gaggagcgagaatagagagagcaagaagatcacggcatacacagaagacaagctggttgactccaacattaagagctactttagtaatcacatggtatcc  10491400                                                                                            <--------                                                                                            <------NtERF2                                                                                           ------>NtERF2                                                                                           <---------                                                                 <---------ALFIN1          <---------RAP2.6(3)                                                               ======================HOX2a_HOX2a                                                              <---------ARR14(2)           <---------                                                              --------->ARR14(2)          --------->RRTF1(3)                                                            --------->DEAR3(1)            --------->RRTF1(2)                                                           <------NtERF2                  --------->RAP2.3(3)                                                          --------->LBD16                 --------->DEAR3(1)                                                          <---------ATERF1(1)             --------->RAP2.3(2)                                                          --------->ABI4(1)               --------->bZIP60(2)                                                          ------>NtERF2                   <---------bZIP60(1)                                                         --------->RAP2.3(3)             --------->ORA47(2)                                                         --------->RRTF1(2)              --------->RAP2.3(1)                                                         --------->RAP2.6(2)             --------->ERF1                                                         --------->RRTF1(3)              --------->RRTF1(1)                                                         --------->RAP2.3(2)             <------NtERF2                                                         --------->DEAR3(1)              --------->ATERF1(1)                                                         --------->ATERF1(2)             --------->DEAR4(2)                                                         <---------DEAR3(1)             <---------ATERF1(1)                                                         <---------ATERF1(2)            ------>NtERF2                                                        --------->RAP2.6(1)             --------->ABI4(2)                                                        --------->ATERF1(1)             <---------RAP2.3(1)                                                        --------->RRTF1(1)             --------->DEAR3(1)                                 --------->ANAC46       --------->ORA47(2)            --------->ATERF1(1)                                 --------->ANAC58       --------->DEAR4(2)            --------->RAP2.3(1)                                 --------->ANAC58       --------->RAP2.3(1)          <---------ATERF1(1)                                --------->ZAT18         --------->ERF1              <---------DEAR3(1)                  --------->ANAC58                     --------->ABI4(1)       --------->ARR14(2)        --------->At4g35610   <---------ZAT18          <---------ATERF1(1)     --------->ARR11(3)        <---------At4g35610   --------->ZAT14          ------>NtERF2           <---------ARR11(3)   ---------->DOF2--------->ANAC46                     <---------At4g35610    <------ZmHOX2a(1)  --------->AHL20(2)         --------->ALFIN1 <---------CCA1(2)<------ZmHOX2a(2)<------ZmHOX2a(2)<--- --->MYB46(3)     --------->ANAC58  <---------ALFIN1   --------->At4g35610--------->WRKY18(1)   <---- ->ARR14(2)       ------->GAMYB--------->ALFIN1        --------->LBD16   <-----------HVH21--------->bZIP60(1) --ARR14(2)     --------->MYB52(1)  --------->DEAR3(1)--------->ANAC46<---------LBD16<---------RAP2.3(1) ---->ANAC46  --------->MYB46(3)<---------ZAT18       --------->DEAR3(1)--------->LBD16<---------DEAR3(1)   accattaaagagctgaacaaacgccatagcagtgtgcgccatccgagcgtctctctccgccgccgatccacttccggtcaggatcatcggcgccgtcatc  10491500                                                                          <---------MYB52(1)                                                                         ------>ZmHOX2a(1)                                                                         <----------DOF2                        <---------ANAC46                               ------>ZmHOX2a(2)                        <---------ANAC58                              <------ZmHOX2a(2)     <--------                        <---------ANAC58                             --------->ARR11(3)     ---------                <---------ALFIN1                                     <---------ARR11(3)     ------->TEIL      <-----------GT1----------->HVH21                         ----------->GT1              <-------- -MYB52(1)     <------NtERF2                                  --------->DAG2      <---------MYB52(1) --TGA1       ------>NtERF2                        ---------->DOF2   --------->ARR14(2)     --------- --HVH21     --------->PCF2                     --------->ANAC58     <---------ARR14(2)  <---------MYB52(2) -------DOF2------>NtERF2    ----------->GT1    --------->ANAC58   ----------->ARR10     --------->MYB46(3) -----ICU4 <---------ATERF1(1)                ---------->DOF2---------->DOF2     --------->TOE2(3)   tttccgatttactcggcccctctctgacttgtagttataagttatttctaaagcaaagactaaaaaagtaagatcctttacttcgttagcaacgaatctg  10491600                                                             <---------AHL20(2)                                                             --------->AHL20(2)                                                            --------->AHL20(2)                                                       <------ZmHOX2a(1) -ARR14(2)                        <---------ARR14(2)<---------HSFB2a(2) >ARR14(2)                        --------->ARR14(2)--------->HSFB2a(2) ---ARR10                  <---------ANAC46      <---------ARR11(3)               *TSS >GLK1(2)         ------>ZmHOX2a(1)              --------->ARR11(3)              <----------DOF2   cttcttctatttgtcgagtcctataggttctgtgcaaattttcatatacaatatctaggagatttaattctcaaatcgatctacttttatttgagtctgt  10491700                             <---------AHL20(2)                            --------->AHL20(2)                           <---------YAB1                  <---------ANAC46                  <---------ANAC58                  <---------ANAC58                                   ================================             <---------ARR11(3)                                      <---------------AGL15             <---------AHL20(1)                                     <---------MYB59             <---------AHL20(2)                                     --------------->AGL15             --------->ARR11(3)                                     <-----------------AGL1             --------->AHL20(2)                                    ----------------->AGL3             --------->AHL20(1)                                    ==================================            --------->AHL20(2)       <--------P    <-------TEIL    ----------------->AGL1          <-       --------->YAB1    <--------HAHB4  <------ZmHOX2a(1)        ------>NtERF2                <-----   <---------AHL20(2)   <---------YAB1 --------->MYB59         --------->At4g35610--------->YAB1-----   atcattttatcaaaatatattcgtgtattattaaatctggttaggacatcaggctcatactcataggctgcctaatttaggcattaaaaattgaattttc  10491800                                             XXXXXXXXXXXXXXXXXXXX>MIR1888                                            ----------->GT1                                            --------->TOE1(3)                                            --------->TOE2(3)                                           <---------ANAC55(2)                                           ----------->GT1                                          <-------TEIL                                   <---------WOX13(1)        --------->DAG2       <---------YAB1           <---------AHL20(2)          ---------->DOF2 ======================================================================MADS_MADS              ------- ======================================================================MADS_MADS            --------- --------ICU4                   <---------YAB1 --------->AHL20(2)                       <---------ARR14(2) ----YAB1                      <---------AHL20(2)      <---------------AGL15            --------->ARR14(2) ---->YAB1   <-----------GT1   --------->AHL20(2)    ----------->GT1--------->YAB1   --------->AHL20(2)   ataagtattttgaataaaccatttgactcaaattttaattgaaatacgttaaaatttgtaaataaagtaatcaaactagggccagaataaaatccgaaaa  10491900                                                                                             --------                       --------->ARR14(2)                                                   <xxxxxxxx                       --------->ARR11(3)                                                  <------ZmHOX2a(1)                       <---------ARR11(3)                                              <---------MYB52(1)                       <---------ARR14(2)                                        --------->ATHB12                      <---------CCA1(2)                                          <---------ICU4               ------>NtERF2                                                     --------->YAB1           ------->GAMYB                                                         xxxxxxxxxxxxxxxx>smallRNA(i)           ----------->HVH21                                                    <---------ATHB12          --------->MYB46(3)                                              <---------ZAT6   ==========          --------->DEAR3(2)                                              ----------->GT1  ==========        <---------ARR14(2)                                   <-----------HVH21--------->WOX13(1)    < ---------->DOF2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --------->ARR11(3)--------->YAB1--------->MYB59 --->DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <----------DOF2   ----------->GT1 <---------MYB46(3) >LBD16 --------->ARR14(2)              ------>ZmHOX2a(1)<---------ARR11(3)--------->TOE2(3)<--------   ccgaaaaccgcatccgacgacttcaaatcttcaaaactgctcctctcttctctctttaaaatctttcagagaggtaatgttaatcatcggttaggaatct  10492000                ------>ZmHOX2a(2)              <---------AGP1              <---------ARR11(3)              --------->GLK1(2)              --------->ARR14(2)              <---------ARR11(1)              <---------ARR14(2)             <---------CCA1(2)             <---------ARR14(1)            --------->LBD16           --------->ANAC46           --------->LBD16                                                     --------->LBD16          --------->HSFB2a(2)                                                --------->RAP2.6(3)  --------->LBD16       --------->ARR11(3)                             <---------YAB1 <---------ANAC58      --------->RVE1(1)       <---------ICU4       --------->GLK1(2)      <---------MYB52(1) <---------ANAC58      --------->CCA1(1)       --------->AHL20(2)  <---------GLK1(2)     <xxxxxxxxxxx <---------ANAC46----------->GT1              <---------AHL20(2)   <---------ARR14(2)    <------MYB46(1) ->GLK1(2)<---------LBD16                 <---------AHL20(2)       --------->ARR14(2)    <------MYB83 xxxxxxxxxxxxxxsmallRNA(fl3)   <----------DOF2--------->AHL20(2)  xxxxxxxxxxxxxxxx>smallRNA(i) ======================HOX2a_HOX2a      --------->CCA1(2)       --------->ETT(1)        --------->MYB59 =====================HOX2a_HOX2a      <---------ARR11(3)      ---------->ID1<---------LBD16xxxxxxxxx ---------LBD16<------ZmHOX2a(2)       --------->ARR11(3)  <----------DOF2  --------->MYB52(1) -GLK1(2)<---------LBD16<---------ARR11(3)--------->AHL20(2) <-----------RAV1(1)       <xxxxxxxxxxxxx   cttccgggttttcccggatctgtaaatatctctctttgtaagatttaaataatttctgactctttgtcggattctgaataccggctaagttcggtttttt  10492100                            <---------DAG2                    <------ZmHOX2a(2)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                    <<<<<<<<<GATA-3                    <---------GLK1(1)                                                  <---------LBD16                    <<<<<<<<<GATA-4                                                   <---------ANAC46                    <<<<<<<<<GATA-1                                                   <---------ANAC58                    <<<<<<<<<GATA-2                                                   <---------ANAC58                   <---------ARR11(3)                                           ------>MYB83                   --------->ARR11(3)                              ------>NtERF2------>MYB46(1)  <---                   <---------AGP1<---------LBD16          --------->AHL20(2)   ----------->RAV1(1)      <----------DOF2------>ZmHOX2a(2)                  --------->TOE2(3)    --------->MYB46(3)  ---- xxxxxxxxxxxxsmallRNA(si3)  <----------DOF2             <----------DOF2<-----------ARR10         ---- xxxxxxxxxxxxxx>smallRNA(le3)   <---------ANAC46     <-----------GT1  --------->WOX13(1)   ---------- xxxxxxxxxxsmallRNA(fl3)   --------->TOE2(3) --------->GLK1(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   gtttctcgcttctgcgagatagatctcttcctttacgcggattgaagactctgttttactttaaatctctgccaatctcaccaacatttcgtggagtaat  10492200  Previous    Next  AGI:  At4g19185.1    Description:  integral membrane family protein. similar to nodulin-related / integral membrane family protein [Arabidopsis thaliana] (TAIR:AT5G45370.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO63731.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) Range:  from: 10489053    to: 10491682    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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