Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    <---------YAB1                                                <---------ANAC46                <---------ICU4                                                  <---------ANAC58             --------->YAB1                                                     <---------HSFB2a(2)         --------->WRKY38(1)                                                    --------->HSFB2a(2)       <-------MYC3          ------>ZmHOX2a(1)                                  <---------ANAC55(2)       ------->MYC3  <----------DOF2                                            <---------ANAC58    <---------ALFIN1<---------ANAC58                                   --------->AtMYB61 --------->YAB1 -------->At4g35610 <---------ANAC58 <------ZmHOX2a(1)              <---------ALFIN1  --------->YAB1 -------ARR10<--------HAHB4  --------->LBD16             --------->GLK1(2)     <---------LBD16 ---->ARR14(2) --------->ICU4--------->HSFB2a(2)        --------->GLK1(1)   <---------ZAT2 ---->GLK1(2)<---------ICU4----------->RAV1(2) --------->YAB1     <-----------GT1--------->LBD16 -----ARR14(2) <---------YAB1<---------HSFB2a(2)        <---------GLK1(1)   --------->ZAT2       ---- ----GLK1(2)<---------YAB1------>ZmHOX2a(1)--------->LBD16       <-----------GT1--------->ANAC55(2)   tctgctccacgttgatcattatgctttcctcctggaacaggatgcccgataatatcagaaatctgttttaacacctccagttgcggaacaataacaatcc  10468700                                                                     -------->ATHB1                                                                     --------->ATHB12                           <---------ANAC55(2)                       --------->YAB1                           <---------ANAC46                         <---------YAB1                           ----------->GT1                       <---------MYB52(2)                       --------->ARR11(3)                   --------->ANAC58                     <---------TOE2(3)                      --------->ANAC58 -->ZmHOX2a(1) <----------DOF2       --------->MYB59      ---------->DOF2                        ----   tggcatcaaaaacaaaactttataagattatgtgaaattttggtaatgtagtctctaacatgaagcaactatcattggctatatatccaaacttcaaaat  10468800                                         --------->ANAC46                                         --------->ANAC58                                         --------->ANAC58                                      --------->DEAR3(1)                                --------->bZIP60(1)                --------->TOE1(2)     --------->At1g77200          --------->WOX13(1)    <---------TGA2(1)        --------->MYB46(3)      <---------bZIP60(1)                     <--------P                <--       --------->ANAC58         --------->TGA2(1)                    --------->LBD16            <----       --------->ANAC58 --------------------->WRI1                 <---------LBD16       ----------->HVH21 ----->YAB1     --------->TOE2(2)    --------->DEAR3(2)    --------->ZAT6              <----------DOF2   catgttcacaaccaattaccttcgacccttgatgacatcaccgacgaaacgagtaagtctaacaatagaaccgggttgaagagtcccttctttgacaaga  10468900                                                          ------>ZmHOX2a(1)    ------>ZmHOX2a(2)                                                         --------->TOE2(3)   <---------AGP1                                                       ------>MYB83          --------->ARR11(3)                      <---------ANAC58                 ------>MYB46(1)       <---------ARR11(3)                      --------->TOE2(3)              --------->AtMYB61       --------->ARR14(2)      ===============HOX2a_HOX2a                  --------->ZAT6             <---------ARR14(2)      <------ZmHOX2a(2)                           <-----------GT1           <---------CCA1(2) -------MYB46(3)      <---------ANAC58       --------->At4g35610       <-----------RAV1(1)   -------- -----GLK1(2) ------>ZmHOX2a(1)          <-----------HVH21============================HOX2a_HOX2a----   ttgttgagatcagttcctagcattccttgatgcaagtatgtcccatcagataacaccatcctaaacctctctcttgttggatcttgttgagccataatct  10469000                                                                                   <-----------HVH21                                                                                   ------>NtERF2                                                                                  --------->ATERF1(2)                                                                                  <---------ATERF1(2)                                                                                  --------->RRTF1(3)                                                                                  --------->RRTF1(2)                                                                                  --------->RAP2.3(2)                                                                                  --------->DEAR3(1)                                                                                  --------->RAP2.6(2)                                                                                  --------->RAP2.3(3)                     <---------LBD16                                             <------NtERF2         <---------MYB52(1)                                                      --------->RRTF1(1)        <-----------HVH21                                                        --------->RAP2.3(1)       --------->ANAC55(2)     --------->ARR14(2)                    --------->LBD16<------NtERF2   <       --------->ANAC46        <---------ARR14(2)                   --------->HSFB2a(2)     -------->P       <---------ANAC55(2)    <---------CCA1(2)               <---------ARR11(3) --------->ERF1     <    --------->ARR14(2)      --------->YAB1                    --------->ARR11(3)--------->LBD16     -    <---------ARR14(2) --------->LBD16                    --------->YAB1        ------>NtERF2       - ->GLK1(2)          --------->MYB52(1)      <-----------HVH21 <-----------ARR10--------->ANAC46    <- ----->At4g35610   <---------ALFIN1--------->At4g35610   <---------ATHB12     --------->MYB46(3)   --   gcttcaaatccgtcacttgcaacaccggaatcatatctgcttcagtcgtcacttctccattcattatcttcccgattgctcccgccgtcaaacttacctc  10469100                                                                                                   --                                                                                       <---------HSFB2a(2)                                                                                       --------->HSFB2a(2)                                                                                     <-------TEIL----         <---------WOX13(1)                                                         --------->CCA1(2)        <------------CBF                                                            --------->GLK1(2)  <---------YAB1                                                                   <---------GLK1(2) ---------ICU4                                                                     --------->ARR14(2) --------HAHB4                                   --------->ANAC58        ------------>CBF       ----- -------->YAB1                               --------->TOE2(3)          --------->ANAC46       ------ -------->ATHB12                             --------->TOE1(3)          --------->ANAC58     <------ZmHOX2a(1) --------ATHB12                    ----------->GT1                      --------->ANAC58  <------ZmHOX2a(1) ------->ICU4--------->ZAT6    ---------->DOF2   --------->ANAC58<---------ICU4    <---------ARR14(2)   catcattacagattgacactaaaacccaaattcaaaagcgttacaaacctcaagaaaatttggataatcagtagaagcaattcgagattcgaggaggaaa  10469200     --------->ARR11(3)     <---------ARR11(3)             --------->ANAC58                                          <------    --------->GLK1(1)               ----------->GT1                                      --------->ARR14(2) --------->GT1                      --------->ANAC58                                    <------ZmHOX2a(1) ----->DAG2                     <------ZmHOX2a(1)                                     <---------TOE2(3) ---->DAG2                    <---------TOE2(3)          ----------->HVH21         <---------REM1(1) ---->DOF2  <---------YAB1<------------CBF             <------------CBF<---------MYB46(3)<---------ARR14(2)   agggtgaaatctttataaatgaattcaaaattgaggagacgaaaaacgatttgtttgaattgacagagaccagaggttgaagaagatgaaggatttgaga  10469300                          <-----------GT1                  ----------->GT1                 --------->ALFIN1               ----------->GT1              --------->DAG2       <----------DOF2                               ------------>CBF  <-        <---------ZAT6  <---------DAG2                   <------ZmHOX2a(1)      --------->YAB1     <-     --------->STY1(1)  <----------DOF2    ----------->GT1  ----------->GT1  <---------GLK1(1)    <-- ---TOE2(3) ---------->DOF2 --------->ANAC46      ---------->DOF2     --------->GLK1(2)         -----   ttagcccctagagtgaaaggtggaaactttacgctccctttgagagggaaactaaagaaggagggtttcaagaatttggaaatcacaatcgagccacgat  10469400             <------ZmHOX2a(2)             <----------TaMYB80            --------->AGP1            ------->TEIL            --------->ARR14(2)            <---------ARR11(3)            <-----------ARR10            --------->ARR11(3)         <---------ANAC55(2)         --------->ANAC55(2)                         <---------REM1(1)        <---------LBD16                             --------->ARR11(3)                              -       <-----------GT1                         <---------MYB52(1)                                   < <---------ZAT6      <-----------HVH21      <-------TEIL                                           -- -----MYB83 <---------ARR14(2)           <---------HSFC1(2)                                        -- -----MYB46(1)------>ZmHOX2a(2)          --------->HSFC1(2)                                        <- -------AtMYB61 -------->P              --------->ANAC58               ---------->DOF2             <- ------------------>TaNAC69(2)          --------->ANAC58       <--------P                          <-   ttggtgttattacggatctaccccttcacaaaattcccttacaagcttcgttaagatgtagactggtaaggctcaaagcacatatataggcccatttgaa  10469500                                     <---------ANAC58                                     <---------bZIP60(2)                                     <---------O2                                     <---------ANAC58               <---------DOF5.7(2)   --------->O2           --------->ANAC58          --------->TGA1a           --------->ANAC58 <---------ANAC58 -------------->AGL15       <---------ANAC55(1)              --------->At4g35610 ---------------AGL15       <---------ANAC46                 <---------At4g35610 --------------->AGL1       <---------ANAC58        --------->At4g35610 --------------->AGL2       <---------bZIP60(2)--------->ZAT18 ----------------AGL2       --------->ANAC55(2)--------->ZAT14                                    <-- ----------------AGL1       <---------ANAC55(2)<---------ZAT14                               -------- ----------------AG ------->TEIL     <---------TGA1a<---------At4g35610              <------------CBF   ggcccaaaatggcaagtaaacgaacatattacgtggaagacgtggcaagtgtactgctgagtcagcaatctctctccatcacattcacattgatcaaccc  10469600  Previous    Next  AGI:  At4g19130.1    Description:  DNA binding / nucleic acid binding / zinc ion binding. similar to replication protein, putative [Arabidopsis thaliana] (TAIR:AT5G45400.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82475.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66716.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ57673.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Replication factor-A protein 1, N-terminal; (InterPro:IPR007199); contains InterPro domain Replication factor-A, C-terminal (InterPro:IPR013955); contains InterPro domain Replication factor-a prot Range:  from: 10466488    to: 10469103    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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