Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        ----------->GT1                     ------>ZmHOX2a(2)                    --------->CCA1(2)                   <---------AGP1                   --------->AGP1                   --------->ARR11(3)                   <---------ARR14(2)              --------->MYB52(1)                                               --------->YAB1         <-----------GT1    --------->DAG2                           --------->ARR14(2)       <------     <---------DAG2<---------ARR11(3)                                <---------ARR14(2)       <------     <----------DOF2<------ZmHOX2a(2)                                <---------ARR11(3)      <-------  <---------ALFIN1 --------->ARR14(2)                   <---------ARR14(2)     <---------ICU4<------- <---------ZAT18  <---------CCA1(2)   --------->DAG2    --------->ARR14(2)    <---------ATHB12<------ ------->PCF2----------->HVH21       ---------->DOF2   --------->GLK1(1)    --------->WOX13(1)------- -->ATHB12 --------->ANAC46---------->DOF2           --------->YAB1 <------ZmHOX2a(1)    <---------ATHB12   tggcccactttatacctcacagatctgaaaaaagctggaaaaagctggaaaacaaacatatccaattcgaggatatatcaatcaatactaaatcaataat  10458900                                                                           ------->TEIL  --------->TOE2(2)                                                        <---------ARR14(2)  --------->TOE2(3)                                                        --------->GLK1(2)  <---------MYB59                                             ------>ZmHOX2a(2)            <---------ATHB12  --------->TOE1(2)                                          <------ZmHOX2a(2)           ------>MYB83 ------ATHB5                                                <---------ARR14(2)    --------->YAB1 ---ICU4                --------->AHL20(2)                  --------->ARR11(3)  --------->ANAC58    - --ATHB51              <---------ATHB12                     <---------ARR11(3)  --------->ANAC58 <--- --ATHB12            --------->WOX13(1)      --------->ARR14(2)            --------->ARR14(2) ------- --ATHB1   --------->TOE1(3)                 <---------ARR14(2)   --------->MYB52(1)     ------>MYB46(1) -->YAB1   --------->TOE2(3)         <---------ALFIN1       --------->ARR14(2)  --------->AtLEC2 ----   tctacctaagaaaccctaaatttcaatcaaataatccgaacacatcaaatccgactcaaacagatcccaaacagacgaatccaagcataccaaatgaatt  10459000                                                                                     ---------->DOF2                                                                                ------>ZmHOX2a(2)                                                                               --------->CCA1(2)                                                                               <------ZmHOX2a(2)                                                                              --------->ARR14(2)                                                                              --------->AGP1                       <------ZmHOX2a(2)                                      <---------ARR14(2)           ----------->GT1                                                    <---------ARR11(3)           <----------ID1<---------ALFIN1                                     --------->ARR11(3)   --------->WOX13(1) --------->ARR11(3)                                      --------->ARR14(3) <---------AHL20(2)   --------->ARR14(2)                                      <---------ARR14(3) -------->YAB1        <---------ARR14(2)         ---------->DOF2             <---------GLK1(1) ------AHL20(2)       --------->AGP1          <---------------AGL15          --------->GLK1(1) >TEIL--------->YAB1  <---------ARR11(3) --------->HSFB2a(2)                ----------->ARR10    ---- ----->AHL20(2)     --------->MYB59      <---------HSFB2a(2)           --------->CCA1(2)       ------   tatattaatcaaaacgaaaaattagatccactctgatcaaattcgagaccataaagagagaaatgaaatggagagatggagatctgcgaaagaaatacct  10459100                               <---------ANAC46                             ------>NtERF2                            ----------->HVH21                            --------->DEAR3(1)                           --------->ATERF1(1)                           --------->SPL7                           <------NtERF2                          <---------ATERF1(1)                          ------>NtERF2                         --------->At1g77200                         --------->DEAR3(1)                         ----------->HVH21                        --------->RAP2.3(1)                        --------->DEAR3(2)                        <------NtERF2                        --------->ATERF1(1)                       <---------RAP2.3(1)         <-----------ARR10                       <---------ATERF1(1)         <---------ARR11(3)                       ------>NtERF2             --------->LBD16                      <---------DEAR3(1)     <---------ARR14(2)                     --------->ATERF1(1)     --------->ARR14(2)                                   ---                    <---------ATERF1(1)  --------->ANAC55(2)                                     <xxx                   --------->DEAR3(1)    --------->ANAC58                             <------ZmHOX2a(2)       ------->GAMYB<-----------HVH21    <---------ANAC55(2)                          ===============    --------->MYB52(1)--------->DEAR3(1) --------->ANAC58               <----------DOF2  ---------->DOF2 ------>CDC5    --------->AtMYB61      --------->CCA1(2)            <-----------GT1   =============== --->TOE2(3)   --------->MYB46(3)   ----------->ARR10            <----------DOF2 <-----------GT1-----   cagagccaacgggcaaaaccaccgtcgccgacgacgggaagagacggaatccagagcttctctacctcttttacctttcaatttttcgatccaaagtcca  10459200           ------>ZmHOX2a(1)      --------->WOX13(1)  <-----------GT1 ------>MYB46(3)   <---------TOE1(2)     --------->ARR11(3)         <---------DEAR3(1) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <---------ARR11(3)       --------->ALFIN1 =================HOX2a_HOX2a           --------->RVE1(1)<----------DOF2                          --- =====================HOX2a_HOX2a       --------->CCA1(1)<---------DAG2--------->ARR14(2)         --- ------>RAV1(1)------>ZmHOX2a(1)  ------>NtERF2         <---------DAG2 <---------ARR14(2)     <------   acaaatatcaatccttcctccaacgttttctctctctgccaaatatctctcttccttcccttttcaatgtgcggttctctcgtgatgaccaaaaaaaaac  10459300                                                                 <------------CBF                                                               <---------ARR11(3)                                                               --------->ARR11(3)                                                             <---------YAB1                                                            <---------TOE2(3)          --------->ARR14(2)                                            <---------MYB46(3)--------->YAB1    <---------ANAC58                  <---------ZAT2--------->ARR11(3)         --------->YAB1       <---------ANAC46                  --------->STY1(2)      --------------------->WRI1             <---------ANAC58      <---------AHL20(2)        <---------ARR11(3)     --------->ATHB12       <---------ANAC46     --------->AHL20(2)  ---------->DOF2 <----------DOF2<------------CBF    <-----------HVH21 ------>TOE2(2)   --------->ZAT2<---------AHL20(1)    <---------YAB1     <---------ANAC58       ----- ------>TOE1(2)--------->LBD16  --------->AHL20(1)  --------->YAB1       <---------ANAC58      <----- -----GT1     <---------HSFB2a(2)  <-----------GT1  ------>ZmHOX2a(2)<---------AtMYB61 <---------ARR14(2)   cctacgattttatattcccgagctagaaaaagaatattttctactttggttcgatcgtcattgatgatattgtggtcgtgtcgcgttcgaaactgctata  10459400                                                                    <---------ANAC46                                                               <---------MYB46(3)                                                              --------->ALFIN1                                                             <-------MYC3                                                             ------->MYC3                                                             ------->PIF5                                                             <-------PIF5                                                             ------->MYC2                                                             <-------MYC2                                                            =========================================                                                            --------->O2                                                            --------->TGA1a                                                            <---------O2<----------DOF2                                                            =======================bZIP_DOF                                                            <---------TGA1a                                                            <---------bZIP60(2)               <------                                                            ============MYC_MYB           <------NtERF2                                                            --------->ANAC55(2)          --------->ANAC58                                               =======================MYC_MYB            --------->ANAC58                                               ------->GAMYB=======================bZIP_DOF<---------                        <---------At5g28300  <---------At5g28300<-------GAMYB         --------->PCF2                       --------->MYB52(1)   <-----------GT1 <---------ANAC55(2)   <---------ICU4   <- ---->YAB1          ------->TEIL =====================================bZIP_DOF   <---------YAB1 <---- ----YAB1   --------->ZAT6       <----------DOF2            <---------ANAC46 <----------DOF2  <------   atcgtctgtgtctcactctacgaacttacggtgttcttttcatatataaccgtgggattatcacgtggttgtgtcttttctttattatggcccgctaagg  10459500                      <------NtERF2                     ------>NtERF2                     <---------ATERF1(1)                     <------NtERF2                    --------->DEAR3(1)                    --------->RAP2.6(2)                   <---------RAP2.6(2)                   --------->RAP2.3(1)                   --------->ATERF1(1)                  <---------ATERF1(1)              <---------ANAC46              <---------bZIP60(2)              --------->ANAC55(2)              <---------ANAC55(1)                                                                  --       <---------ARR11(3)                                                                        <--- =MYC_MYB <----------DOF2           <---------ANAC58                <---------ANAC58          <------ ---TOE2(3)   <---------ANAC58  <---------ANAC58                    <---------ANAC58          <------ -CDC5<---------CCA1(2)         <---------ANAC58   --------->ZAT6 <-----------GT1          <---------ARR11(3) ------TEIL   <---------ANAC58<---------YAB1     <<<<<<<<<<<<<<<<<LFY                      --------->AHL20(1) --ZmHOX2a(1) <---------ANAC55(2)   <---------ANAC58    <---------MYB52(1)<----------DOF2  --------->AHL20(2) ---TOE1(3)   <---------O2<----------DOF2  --------->ANAC46  <---------AHL20(2)            <---------AHL20(1)   attcatcggtatctttacgtggccgcctctttattcttgccttccacgatgtaacactggtatttttttttcttgacttttctatgagagctatatatta  10459600                                                ----------->GT1                                               <---------YAB1                                             <---------ICU4                                             --------->ATHB51                                             -------->ATHB1                                            <---------YAB1                                --------->AHL20(2)                                <---------AHL20(2)                               <---------AHL20(1)      --------->ATHB12    --------->AHL20(2)--------->ICU4     <-------TEIL      --------->YAB1       <---------ATHB51  --------->ATHB12   ------>MYB46(1)    ------>NtERF2 <---------YAB1      ------>MYB83      --------->ANAC46                         <---------TOE2(3) --------->ICU4    <---------MYB59  <-----------GT1                           <---------AHL20(2) ------->YAB1      <---------MYB46(2)<---------At5g28300                     <---------YAB1 ------YAB1     <-----------GT1--------->AHL20(2)                          --------->YAB1 ---AHL20(2) <---------ARR14(2)--------->AHL20(1)                        --------->AHL20(2) ---YAB1     --------->ARR14(2)<---------AHL20(2) <---------YAB1      --------->AHL20(2)      <------   ttcatgattcatggggatttaccaaacataaaataaaattaccgccattattgttataagtttacatgtttataaaataataaatgttgatattatctgt  10459700                                                  --------->YAB1                                               <---------ICU4                                              --------->ICU4                                            --------->YAB1                                  --------->YAB1 <---------YAB1                          --------------------->WRI1   ----------->GT1       <-------MYC3      --------->AHL20(2)  ----------->GT1        ------->MYC3      <---------AHL20(2)       <----------DOF2  <---------ZAT6      <---------ALFIN1   <----------DOF2  --------->AHL20(2)                        - -----RAV1(1) <---------YAB1     --------->ICU4--------->YAB1--------->GLK1(2)                 ------   tgaagagttaaatacgatgatacaacacgtttggaattatcgtctttaattatcaaaaaaaaaaatcggtctttcatgttttaaaaagattgcaagatgc  10459800  Previous    Next  AGI:  At4g19112.1    Description:  CPuORF25 (Conserved peptide upstream open reading frame 25). similar to CPuORF24 (Conserved peptide upstream open reading frame 24) [Arabidopsis thaliana] (TAIR:AT5G45428.1) Range:  from: 10454539    to: 10459339    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g19110.1    Description:  protein kinase, putative. similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G45430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66722.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) Range:  from: 10454540    to: 10459339    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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