Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ---------                                                                                           <---------ARR14(2)                                                                                           --------->ARR14(2)                                                                                         ----------->ARR10                                                                                      <------NtERF2                                                                                     ------>NtERF2                                                                                    <---------ANAC46                                                                                    --------->DEAR3(1)                                                                                   <------NtERF2                                                                                   --------->ATERF1(1)                                                                                  <---------RAP2.3(1)                                                                                  <---------ATERF1(1)                             <------ZmHOX2a(1)                                   <---------DEAR3(1)                           <---------TOE2(3)                  <---------ANAC58  --------->ATERF1(1)<-                      --------->LBD16                         <---------ANAC46 <---------ATERF1(1) <-                    <---------LBD16                  --------->ALFIN1         --------->ARR14(2)   <-         --------->ARR11(3)<---------TOE1(3)       --------->DEAR3(1)         <---------ARR14(2)   --         <---------ARR11(3)--------->ANAC55(2)     <---------ANAC46  ---------->DOF2<---------DEAR3(1) ----->At4g35610  --------->GLK1(2)        <----------DOF2    <---------ANAC58----------->HVH21    -- ------At4g35610  <---------ARR14(2)   --------->ZAT18  <---------ANAC46  --------->At4g35610      <-   gctcagtgtgagatattgagaacccggttaaggaatcgatgagcgctgtatcgccgtggtgtttgtgtgagaaaagagcggagacggcgtcgagatttgg  10414100          <---------REM1(1)        <------MYB83        <---------ANAC46        <------MYB46(1)       <---------DEAR3(1)       <---------AtMYB61       --------->ALFIN1      <--------P    --------->ALFIN1                 <---------GLK1(2)  <---------ANAC46              <---------REM1(1) >CCA1(2) --------->ALFIN1      <---------ANAC46 --------ETT(2)             <---------ANAC46 --------WRKY38(1)          <---------ANAC58   --------->HSFB2a(2) --------WRKY12             <---------ANAC58   <---------HSFB2a(2)                              ----- --------->HVH21       --------->ARR14(2) ------>ZmHOX2a(1) ---------->DOF2                     <---- ------->ETT(2)        <---------ARR14(2)<---------------AGL15           <---------AtMYB61     <----- --------DEAR3(1)      ---------->TaMYB80--------------->AGL15--------->DAG2                 <-------   gtcgacggggaggtgtagggaagggaatttgctggtgtagattcctgttttagaagagaaccaaaagggagggttttggtgagacgtttgggttttagga  10414200                         <------NtERF2                        ------>NtERF2                       --------->RAP2.6(2)                       --------->DEAR3(1)                       --------->RRTF1(2)                       --------->RRTF1(3)                       --------->DREB2C(2)                       --------->RAP2.3(3)                       <---------ATERF1(2)                       --------->ATERF1(2)                       --------->RAP2.3(2)                       --------->ANAC46                      <------NtERF2                      --------->RRTF1(1)                      --------->ATERF1(1)                     <------ZmHOX2a(2)               ------>MYB83                      --------->DEAR4(2)                    *TSS                              ------>MYB46(1)                      --------->ERF1                   --------->ZAT14            ----------->GT1 ---                      --------->ORA47(2)               <---------ZAT14            --------->LBD16 ---                      --------->RAP2.3(1)              --------->At4g35610       ----------->GT1-----                     <---------RAP2.3(1)               <---------At4g35610       <---------HSFB2a(2)                     ------>NtERF2                 --------->GLK1(2)        ----------->HVH21--------                     <---------ATERF1(1)          <---------GLK1(2)         <---------YAB1  ---------    <------NtERF2    <---------RRTF1(1)           --------->ARR11(3)  <---------AHL20(2)    --------- ---->ARR14(2)      <---------DEAR3(1)          <---------TOE1(3)     <-----------GT1      --------->MYB46(3) -----ARR14(2)    <-----------HVH21             <---------TOE2(3)  <---------ICU4--------->HSFB2a(2) -ZmHOX2a(1)     --------->ALFIN1               <---------YAB1------------>CBF  <---------LBD16------ --TOE2(3)       <-----------RAV1(1)  --------->At4g35610 <---------At4g35610   ------>ZmHOX2a(2)<---   tttggcggtatgtgaagatgtgtcgccgccattagagagaagcagagtttaagattctgcagcgatcaatatttacttctgatcgggaaataaaccaacg  10414300                                                                                                   --                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                 <---                                                                                                 ----                     <---------AHL20(2)                                                          <---                     --------->AHL20(2)                                                          <---                    <---------AHL20(2)                         <---------WOX13(1)                <---                    --------->AHL20(2)                      <---------AHL20(2)                   <---                    <---------AHL20(1)       --------->ANAC55(2)                                 ---- ------>ANAC58   <---------ICU4              <---------ANAC55(2)                                 ==== ------>ANAC58  <---------ATHB51          <---------YAB1    --------->AHL20(2)                   ==== -->GAMYB       --------->ICU4          <--------HAHB4      --------->AHL20(1)                   <--- ->MYB52(1)     --------->AHL20(2)      --------->YAB1      <---------AHL20(1)                   ---- >TOE1(2)       <---------AHL20(2)     <---------YAB1  ------------>CBF                       <------ZmHOX2a(2) >TOE2(2)----------->GT1        <-----------GT1     <------------CBF                         <------- --->MYB46(3)  <---------AHL20(1) --------->ZAT6   <---------ICU4                            -------- ------LBD16  --------->YAB1 <---------REM1(1)    --------->ICU4 --------->ATHB12    --------->ZAT18<   acggaatagtttagtaaaataattaatttagttgtaacactattattatgtactaattgcaattaattgatttcgaagaacagagagtgcaagaagatca  10414400        ----------->HVH21       <-------MYC3       ------->MYC2       <-------MYC2       ------->MYC3      --------->ANAC58      --------->TGA1a      --------->bZIP60(2)      --------->ANAC46      ===================MYC_MYB      <---------ANAC55(2)      --------->ANAC55(1)      --------->ANAC55(2)      --------->ANAC58      <---------O2      ================================bZIP_DOF      <---------TGA1a      --------->O2 ----------->HVH21 ------->ALFIN1 -----MYC3 ---->MYC3 ---->MYC2 -----MYC2 ------O2 ----->ANAC55(2) ------ANAC46 ------ANAC58 ------ANAC58 ------ANAC55(2) ----->O2                    ----------->GT1 ========================MYC_MYB =====================================bZIP_DOF ------TGA1a                --------->DAG2                       <---------ANAC58 ----->TGA1a                <---------------AtSPL8       --------->ANAC55(2)   <---------MYB52(1) --ARR11(3)                ---------->DOF2 --------->AHL20(2)    <---------ANAC58          <--------- ->ARR11(3)       <---------MYB52(1) --------->YAB1  --------->ANAC58  <---------DAG2<-----------GT1< -----------HVH21<-------GAMYB  ------------>CBF     --------->ANAC58  <----------DOF2<--------------   cgtgtgacacgtgacagtctgttagcaaaaaaagtacaatagtcaaaaaatacacactcacttgatttcttccctttttcagttttgtttccctattggc  10414500                                                                                    ------>ZmHOX2a(2)                                             <------NtERF2                         <---------GLK1(1)                                            --------->LBD16                        --------->GLK1(1)                                            --------->ORA47(1)                    <---------AGP1                    <----------DOF2         <---------ATERF1(1)                   <---------ARR11(3)                 --------->GLK1(2)          ------>NtERF2   --------->At4g35610   --------->ARR11(3)      <------ZmHOX2a(2)                    --------->DEAR3(1)                     <---------ARR14(2)     <---------ARR14(2)                    <---------ATERF1(2)              --------->ATHB12      ---     --------->ARR14(2)                    --------->ATERF1(2)         --------->ANAC58           --- ---CBF------>ZmHOX2a(2)                  --------->ATERF1(1)          --------->ANAC58      <<<<<<<< ----------DOF2 <---------GLK1(2)         <---------LBD16   <---------At4g35610   --------->ARR14(2) ---AGL1  <----------DOF2    --------------------->WRI1   <-----------RAV1(2)    <---------CCA1(2)<--   tactttggatcccttttagattctttatattctctgatgttatcgccggccaaatgtgagtcagaagaggctcaagctccattggatctccattcttctt  10414600            <---------GLK1(2)          --------->LBD16        <---------LBD16    ----------->HVH21   ------>ZmHOX2a(2)   ==================================HOX2a_HOX2a  --------->CCA1(2)  <------ZmHOX2a(2)  ===================================HOX2a_HOX2a        --------->ZAT2 <---------AGP1                                         --------->At4g35610                    ------ --------->ARR11(3)                                  --------->HSFC1(2)                     ------>NtERF2 --------->AGP1                                      <---------At4g35610                   --------->LBD16 <---------ARR14(2)                                  <---------HSFC1(2)                    ---------- --------->ARR14(2)                           ------>ZmHOX2a(1)                            <---------ETT(1) <---------ARR11(3)                        <---------ATHB12                                --------->ANAC46 ------>HSFC1(1)                          --------->ARR14(2)     ------>ZmHOX2a(1)        --------->LBD16 ------>HSFB2a(2)                         <---------ARR14(2)--------->DEAR3(1)       <---------At4g35610 <TBF1 ------->TEIL             <-----------RAV1(1)  --------->At4g35610           --------->DAG2 -------HSFB2a(2)             ------>ZmHOX2a(1)     --------->GLK1(2)             ---------->DOF2 ---   ctagatctgaaccggaatgtctctctcttgtcctctggtgtcccaatcctgaagaagctgctccgtcctctactagagaactcataaagctccccgacaa  10414700                       ----------->HVH21                       --------->O2                   <------ZmHOX2a(2)                   --------->CCA1(2)                  --------->AGP1                  <---------ARR11(3)                  --------->ARR14(2)                  --------->ARR11(3)                  <---------ARR14(2)                 --------->GLK1(1)                                                                 <-   --------->CCA1(2)   --------->ANAC46                                                         <---- --->MYB52(1)    <---------GLK1(1)         ----------->RAV1(2)                   <------ZmHOX2a(1)--- ->HVH21        ----------->ARR10   <---------YAB1         <------ZmHOX2a(1)  --------->At4g35610 --- ---->GAMYB    <------ZmHOX2a(1)  --------->YAB1    --------->MYB52(1)    <---------ANAC46 <---------ANAC46   cggagagatgagtttgaggagatccacgacgcttaattgtaattcgcctgaagagaacggaggagaagggagagtttcgcagaggaagtcatctcgtggt  10414800            <---------ANAC46           <---------At4g35610                <---------DEAR3(1)        <---------At4g35610                  --------->ATERF1(1)        --------->At4g35610                 <-----------HVH21     <---------At4g35610           --------->At4g35610              --------->AtLEC2    --------->DEAR3(1)             <---------ZAT2 ------>NtERF2     --------->ANAC58             <---  <---------At5g28300              <---------At4g35610      --------->ZAT18                     <---- ----------HVH21        --------->MYB52(1)<---------AtMYB61 <---------ZAT18                   ------- ----P --------->DEAR3(1)     <---------MYB46(3)<------NtERF2     <---------AtLEC2            <------ ------>ANAC58         <---------SPL7 <---------LBD16 --------->CCA1(2)                     <-------- ------>ANAC58  <-----------RAV1(1)--------->ZAT2--------->DEAR3(1) --------->ANAC58  ------->TEIL---   aagtcacagccgctgcttatgttgacgaacggttgtcagcttcggaggtcgccgagatttagggccctgcatgcaaatttcgacaatgtatgctcggttc  10414900                                                       --------->At4g35610      --------->MYB52(1)     --------->ARR11(3)        <---------At4g35610                <---------DEAR3(1)     ---------->DOF2  --------->At4g35610           --------->At4g35610                  --------->ATERF1(1)   ----------------->AG      <---------ARR11(3)  <---------At4g35610                    <-----------HVH21   ----------------->AGL1<------ZmHOX2a(1)    <---------At5g28300              --------->At4g35610 ------ANAC46     <---------ANAC46         <-----------HVH21                   <---------ZAT2 ------>NtERF2 -----LBD16   --------->HSFC1(2)          --------->ANAC58          --------->MYB52(1)<---------AtMYB61 -->ARR14(2)  <---------HSFC1(2)          --------->ANAC58   <----------DOF2   <---------At4g35610 ---ARR14(2)  <---------HSFB2a(1)       <--------P  <---------At4g35610        --------->ZAT2-------- -DEAR3(2)    --------->HSFB2a(1)  <---------O2 --------->DEAR3(1) <---------SPL7 <---------LBD16 --- ------>LBD16----------->ARR10     <---------ANAC46--------->DEAR3(1)     <---------MYB46(3)<------NtERF2   cggttaccaaagggggagtttcgcagaggaagttctctcgtggtaagtcacagccgctgcttactttgacgaacggttgtcagcttcggaggtcgccgag  10415000  Previous    Next  AGI:  At4g19010.1    Description:  4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein. Identical to 4-coumarate--CoA ligase-like 6 (4CLL6) [Arabidopsis Thaliana] (GB:Q84P24;GB:O49414;GB:Q8GYV8); similar to OPCL1 (OPC-8:0 COA LIGASE1), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G20510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67052.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) Range:  from: 10411501    to: 10414260    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g19020.1    Description:  CMT2 (CHROMOMETHYLASE 2); DNA binding. Identical to DNA (CMT2) [Arabidopsis Thaliana] (GB:Q94F87;GB:O49415); similar to CMT3 (CHROMOMETHYLASE 3) [Arabidopsis thaliana] (TAIR:AT1G69770.1); similar to CMT1 (CHROMOMETHYLASE 1), DNA binding [Arabidopsis thaliana] (TAIR:AT1G80740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23425.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67127.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62216.1); contains InterPro domain C-5 cytosine-specific DNA methylase; (InterPro:IPR001525); contains InterPro domain Chromo domain-like; (InterPro:IPR016197); contains In Range:  from: 10414537    to: 10421220    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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