Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              ---------->DOF2                                                                          =================HOX2a_HOX2a                                                   ----------->GT1        <------ZmHOX2a(2) ----->ZAT14                             <------ZmHOX2a(1)               <---------ARR11(3) ------ZAT18                           <---------TOE1(2)           ------>MYB83             --------- ------ZAT14                           <---------TOE2(2)           --------->ANAC58       --------->ATHB12 --->ANAC46                ------>ZmHOX2a(1)<-------TEIL           ------>MYB46(1)----------->GT1 ->ZAT6     <---------ANAC58       <---------HSFB2a(2)             --------->ANAC58 <------ZmHOX2a(1) ->RAV1(1)  <---------ANAC58       --------->HSFB2a(2)           --------->MYB46(3)----------->GT1   acactcactaacttgcttcttaatctctcctaaactactcgaaggattcatggtagtaacaatagcaccaagcgagatcaaagagaggaaaatcatcgga  10413900                                                                         <------NtERF2                                                                        <---------RAP2.6(3)                                                                        ------>NtERF2                                                                       --------->ANAC58                                                                       --------->RRTF1(3)                                                                       --------->RRTF1(2)                                                                       --------->ATERF1(2)                                                                       <---------ATERF1(2)                                                                       --------->DEAR3(1)                                                                       --------->DREB2C(2)                                                                       --------->ANAC46                                                                       --------->ANAC58                                                                       --------->RAP2.6(2)                                                                       --------->RAP2.3(3)                                                                       --------->RAP2.3(2)                                                                       ------->GAMYB                                                                      --------->RRTF1(1)                                                                      --------->ERF1                                                                      --------->RAP2.3(1)                                                                      --------->MYB46(3)                                                                     --------->At4g35610                                                                     <---------ATERF1(1)                                                                     <---------At4g35610                                                                     --------->ZAT2                                                                     <---------ZAT2                                                                    --------->ANAC46                                                                 ------>ZmHOX2a(2)                                <-----------HVH21               <------ZmHOX2a(2)                ----    --------->ANAC46            <-----------TGA1               <---------ARR11(3)         --------->GLK1(2)    --------->ANAC58           --------->ANAC46                --------->ARR11(3)     --------->TOE2(3)    --------->ANAC58           --------->bZIP60(2)          <---------WOX13(1)        --------->YAB1   <---------LBD16     <---------ZAT6                  --------->ANAC55(2)      <---------WOX13(1) >At4g35610--------->MYB59    <-----------STF1         <---------ANAC55(2)    --------->ATHB12   <---   aaatagacggaattaggcaagacgagtgatacaacgtcaccttgacgaacacctaaaacgtgatagatcccagccgccattgattgaaccataatctgta  10414000                                                                                            ---------                                                                                           --------->ARR14(2)                                                                                           <---------ARR14(2)                                                                                         ----------->ARR10                                                                                      <------NtERF2                                                                                     ------>NtERF2                                                                                    --------->DEAR3(1)                                                                                    <---------ANAC46                                                                                   <------NtERF2                                                                                   --------->ATERF1(1)                                                                                  <---------RAP2.3(1)                                                                                  <---------ATERF1(1)                             <------ZmHOX2a(1)                                   <---------DEAR3(1)                           <---------TOE1(3)                  <---------ANAC58  --------->ATERF1(1)--                      --------->LBD16                         <---------ANAC46 <---------ATERF1(1) --                    <---------LBD16                  --------->ALFIN1         --------->ARR14(2)   <-         <---------ARR11(3)<---------TOE2(3)       --------->DEAR3(1)         ----------->HVH21    <-         --------->ARR11(3)--------->ANAC55(2)     <---------ANAC46  ---------->DOF2<---------DEAR3(1) ----->At4g35610  <---------ARR14(2)       <----------DOF2    <---------ANAC58<---------ARR14(2)   <- ------At4g35610  --------->GLK1(2)    --------->ZAT18  <---------ANAC46  --------->At4g35610      <-   gctcagtgtgagatattgagaacccggttaaggaatcgatgagcgctgtatcgccgtggtgtttgtgtgagaaaagagcggagacggcgtcgagatttgg  10414100          --------->ALFIN1        <---------ANAC46        <------MYB46(1)        <------MYB83       <---------AtMYB61       --------->ALFIN1       <---------DEAR3(1)      <--------P    --------->ALFIN1                 <---------GLK1(2)  <---------ANAC46              <---------REM1(1) >CCA1(2) <---------REM1(1)     <---------ANAC46 --------->HVH21            <---------ANAC46 ------->ETT(2)             <---------ANAC58   --------->HSFB2a(2) --------DEAR3(1)           <---------ANAC58   <---------HSFB2a(2)                              <---- --------WRKY12        <---------ARR14(2) ------>ZmHOX2a(1) ---------->DOF2                     ----- --------ETT(2)        --------->ARR14(2)<---------------AGL15           <---------AtMYB61     <----- --------WRKY38(1)     ---------->TaMYB80--------------->AGL15--------->DAG2                 <-------   gtcgacggggaggtgtagggaagggaatttgctggtgtagattcctgttttagaagagaaccaaaagggagggttttggtgagacgtttgggttttagga  10414200                         <------NtERF2                        ------>NtERF2                       --------->RAP2.3(3)                       --------->ATERF1(2)                       --------->ANAC46                       --------->RAP2.6(2)                       --------->DREB2C(2)                       --------->RRTF1(3)                       --------->RRTF1(2)                       --------->RAP2.3(2)                       <---------ATERF1(2)                       --------->DEAR3(1)                      --------->RAP2.3(1)                      --------->ERF1                      --------->DEAR4(2)                      ------------>CBF                ------>MYB83                      --------->RRTF1(1)                    *TSS                              ------>MYB46(1)                      --------->ORA47(2)               --------->ZAT14            ----------->GT1 ---                      <------NtERF2                    <---------ZAT14            --------->LBD16 ---                      --------->ATERF1(1)              <---------At4g35610       ----------->GT1-----                     <---------RRTF1(1)                --------->At4g35610       <---------HSFB2a(2)                     ------>NtERF2                 --------->GLK1(2)        <---------YAB1  ---------                     <---------ATERF1(1)          --------->ARR11(3)        ----------->HVH21--------    <------NtERF2    <---------RAP2.3(1)          <---------GLK1(2)   <---------AHL20(2)    --------- -----ARR14(2)      <---------DEAR3(1)          <---------TOE2(3)     <-----------GT1      --------->MYB46(3) ---->ARR14(2)    <-----------HVH21             <---------YAB1<------ZmHOX2a(2) ------>ZmHOX2a(2)<--- -ZmHOX2a(1)     --------->ALFIN1               <---------TOE1(3)  <---------ICU4--------->HSFB2a(2) --TOE2(3)       <-----------RAV1(1)  --------->At4g35610 <---------At4g35610   <---------LBD16------   tttggcggtatgtgaagatgtgtcgccgccattagagagaagcagagtttaagattctgcagcgatcaatatttacttctgatcgggaaataaaccaacg  10414300                                                                                                   --                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                 <---                                                                                                 ----                     <---------AHL20(2)                                                          ----                     --------->AHL20(2)                                                          <---                    <---------AHL20(1)                         <---------WOX13(1)                <---                    <---------AHL20(2)                      <---------AHL20(2)                   <---                    --------->AHL20(2)       <---------ANAC55(2)                                 <--- ------>ANAC58   <---------ICU4              --------->ANAC55(2)                                 ==== ------>ANAC58  --------->AHL20(2)        <---------YAB1    --------->AHL20(2)                   <--- -->GAMYB       --------->ICU4          <--------HAHB4      <---------AHL20(1)                   ==== >TOE2(2)       <---------ATHB51        --------->YAB1      --------->AHL20(1)                   ---- ->MYB52(1)     <---------AHL20(2)     <---------YAB1  ------------>CBF                       <------ZmHOX2a(2) >TOE1(2)----------->GT1        <-----------GT1     <------------CBF                         <------- ------LBD16   <---------AHL20(1) --------->ZAT6   <---------ICU4                            -------- --->MYB46(3) --------->YAB1 <---------REM1(1)    --------->ICU4 --------->ATHB12    --------->ZAT18<   acggaatagtttagtaaaataattaatttagttgtaacactattattatgtactaattgcaattaattgatttcgaagaacagagagtgcaagaagatca  10414400        ----------->HVH21       ------->MYC2       <-------MYC3       <-------MYC2       ------->MYC3      --------->ANAC58      --------->O2      --------->ANAC58      <---------TGA1a      --------->bZIP60(2)      --------->TGA1a      <---------O2      <---------ANAC55(2)      --------->ANAC55(2)      --------->ANAC55(1)      --------->ANAC46      ================================bZIP_DOF      ===================MYC_MYB ----------->HVH21 ------->ALFIN1 -----MYC2 ---->MYC3 -----MYC3 ---->MYC2 ------O2 ----->ANAC55(2) ----->TGA1a ------ANAC55(2) ------ANAC46 ------TGA1a ------ANAC58                ----------->GT1 =====================================bZIP_DOF ------ANAC58               --------->DAG2 ========================MYC_MYB                                 <---------ANAC58 ----->O2                   <---------------AtSPL8       --------->ANAC55(2)   <---------MYB52(1) --ARR11(3)                ---------->DOF2 --------->AHL20(2)    <---------ANAC58          <--------- ->ARR11(3)       <---------MYB52(1) --------->YAB1  --------->ANAC58  <---------DAG2<-----------GT1< -----------HVH21<-------GAMYB  ------------>CBF     --------->ANAC58  <----------DOF2<--------------   cgtgtgacacgtgacagtctgttagcaaaaaaagtacaatagtcaaaaaatacacactcacttgatttcttccctttttcagttttgtttccctattggc  10414500                                                                                    ------>ZmHOX2a(2)                                             <------NtERF2                         <---------GLK1(1)                                            --------->ORA47(1)                     --------->GLK1(1)                                            --------->LBD16                       --------->ARR14(2)                    <----------DOF2         ------>NtERF2   <---------At4g35610   <---------ARR14(2)                 --------->GLK1(2)          <---------ATERF1(1)                   <---------ARR11(3)      <------ZmHOX2a(2)                    <---------ATERF1(2)                    <---------AGP1     --------->ARR14(2)                    --------->DEAR3(1)               --------->ATHB12      <--     <---------ARR14(2)                    --------->ATERF1(2)         --------->ANAC58           --- ---CBF------>ZmHOX2a(2)                  <---------LBD16   --------->At4g35610   --------->ARR11(3) ----------DOF2 <---------GLK1(2)         --------->ATERF1(1)          --------->ANAC58      <<<<<<<< ---AGL1  <----------DOF2    --------------------->WRI1   <-----------RAV1(2)    <---------CCA1(2)---   tactttggatcccttttagattctttatattctctgatgttatcgccggccaaatgtgagtcagaagaggctcaagctccattggatctccattcttctt  10414600            <---------GLK1(2)          --------->LBD16        <---------LBD16    ----------->HVH21   ==================================HOX2a_HOX2a   ------>ZmHOX2a(2)  ===================================HOX2a_HOX2a  --------->CCA1(2)  <------ZmHOX2a(2)                                     --------->ZAT2 <---------AGP1                                         --------->At4g35610                    ------ --------->AGP1                                      <---------HSFC1(2)                     ------>NtERF2 <---------ARR11(3)                                  --------->HSFC1(2)                    <---------ETT(1) --------->ARR11(3)                                  <---------At4g35610                   --------->LBD16 <---------ARR14(2)                           ------>ZmHOX2a(1)                            --------->ANAC46 --------->ARR14(2)                        <---------ATHB12                                ---------- -------HSFB2a(2)                         --------->ARR14(2)     ------>ZmHOX2a(1)        --------->LBD16 ------>HSFC1(1)                          <---------ARR14(2)--------->DEAR3(1)       <---------At4g35610 <TBF1 ------->TEIL             <-----------RAV1(1)  --------->At4g35610           --------->DAG2 ------>HSFB2a(2)             ------>ZmHOX2a(1)     --------->GLK1(2)             ---------->DOF2 ---   ctagatctgaaccggaatgtctctctcttgtcctctggtgtcccaatcctgaagaagctgctccgtcctctactagagaactcataaagctccccgacaa  10414700                       ----------->HVH21                       --------->ANAC46                   --------->CCA1(2)                   <------ZmHOX2a(2)                  <---------ARR14(2)                  <---------ARR11(3)                  --------->AGP1                  --------->ARR14(2)                  --------->ARR11(3)                 --------->GLK1(1)                                                                 <-   --------->CCA1(2)   --------->O2                                                             <---- --->MYB52(1)    <---------GLK1(1)         ----------->RAV1(2)                   <------ZmHOX2a(1)--- ->HVH21        ----------->ARR10   <---------YAB1         <------ZmHOX2a(1)  --------->At4g35610 --- ---->GAMYB    <------ZmHOX2a(1)  --------->YAB1    --------->MYB52(1)    <---------ANAC46 <---------ANAC46   cggagagatgagtttgaggagatccacgacgcttaattgtaattcgcctgaagagaacggaggagaagggagagtttcgcagaggaagtcatctcgtggt  10414800  Previous    Next  AGI:  At4g19010.1    Description:  4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein. Identical to 4-coumarate--CoA ligase-like 6 (4CLL6) [Arabidopsis Thaliana] (GB:Q84P24;GB:O49414;GB:Q8GYV8); similar to OPCL1 (OPC-8:0 COA LIGASE1), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G20510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67052.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) Range:  from: 10411501    to: 10414260    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g19020.1    Description:  CMT2 (CHROMOMETHYLASE 2); DNA binding. Identical to DNA (CMT2) [Arabidopsis Thaliana] (GB:Q94F87;GB:O49415); similar to CMT3 (CHROMOMETHYLASE 3) [Arabidopsis thaliana] (TAIR:AT1G69770.1); similar to CMT1 (CHROMOMETHYLASE 1), DNA binding [Arabidopsis thaliana] (TAIR:AT1G80740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23425.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67127.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62216.1); contains InterPro domain C-5 cytosine-specific DNA methylase; (InterPro:IPR001525); contains InterPro domain Chromo domain-like; (InterPro:IPR016197); contains In Range:  from: 10414537    to: 10421220    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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