Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                         ============                                                                                         ------>ZmHOX2a(1)           <-----------HVH21                                                             ============         <---------AtMYB61                                                           ------->TEIL       <----------DOF2                                                               <---------ARR14(2)  ---------->DOF2                                                                    --------->GLK1(2) --->AHL20(1)                  <-----------GT1         ------->TEIL                  --------->ARR14(2) ----ARR11(3)             --------->ICU4            <---------ATHB12              --------->ANAC58 ----AHL20(1)             <---------ATHB51   <----------DOF2        <---------ANAC55(2)  <-----------HVH21 --->ARR11(3)         --------->ZAT18   ---------->DOF2--------->GLK1(2)          --------->ANAC58   attcgaaagctttggtcacagaagtgcgataattcaccaatacaaagcttttcaatgaatctgaaaaatcacctaagagtcggaacgaatccttcagatc  10411100 ->ZmHOX2a(2) ----GLK1(1) --->GLK1(1)                                    ------>ZmHOX2a(2) -ZmHOX2a(2)                                  <---------ARR11(3) -->ARR11(3)                                  --------->ARR11(3) -->ARR14(2)                                  --------->AGP1 ---ARR14(2)                             --------->HSFB2a(2) ---AGP1                          <-----------GT1 ---ARR11(3)                  =========================HOX2a_HOX2a           --------->ANAC58 -->AGP1                      ========================HOX2a_HOX2a       --------->ARR11(3) --At4g35610                  ------>ZmHOX2a(1)<------ZmHOX2a(2)        <---------ARR11(3) --CCA1(2)            --------->RAP2.6(3)<---------HSFB2a(2) <---------ATHB12--------->ANAC58 ==HOX2a_HOX2a      ----------->TGA1 <----------DOF2    --------->TOE2(3)    --------->ANAC46 =HOX2a_HOX2a     --------->YAB1  <---------AHL20(2)  ------->TEIL--------->ANAC46    --------->YAB1<   tctctataaacccaagtctaacatgacgactcctattaactttctcgagatctatgaaccctaatcacacagaagaactacgaaacgatgaaaattcaag  10411200                                                                               ------>ZmHOX2a(2)                                                                              --------->CCA1(2)                                                                             <---------ARR14(2)                                                                             --------->ARR11(3)                                                                             --------->ARR14(2)                                                            <---------ARR11(3)<------ZmHOX2a(2)                                                    --------->At4g35610      <---------ARR11(3)                                                 <---------At4g35610         --------->AGP1        ---------->DOF2                          --------->At4g35610         <---------AGP1      ----------->HVH21                          <---------ZAT2            ----------->ARR10       --  <---------WRKY18(1)                          <---------ZAT14       --------->HSFB2a(2)     <------- ---------WOX13(1)                             --------->ZAT18       <---------HSFB2a(2)  -----------   agattgacctgaaagacagagagagcgatgaactgctcgagcttaagagtgagctgatgccagagcttcttctggtacagatctgcgagcgaattgtacc  10411300                                                            --------->ARR11(3)               <---------ZAT18                              <---------ARR14(2)               --------->ZAT18                              <---------ARR11(3)      --------->ZAT2                                        --------->ARR14(2)      <---------ZAT2                             --------->RAP2.3(3)     ------>MYB46(1)                           <---------At4g35610                          ------>ZmHOX2a(2)     ------>MYB83                              --------->At4g35610                        --------->ARR11(3) ------->MYB46(3)                    --------->ARR11(3)     <---------GLK1(2)       <---------HSFC1(2) ----GT1 <---------LBD16             <---------ARR11(3)   ----------->ARR10         --------->HSFC1(2) ---->AtSPL8 <---------RAP2.3(3)   <---------TOE2(3)     <--------P              ---------->DOF2   actcaccaagctctgggtgcgcatttttctgcgattcaaggtattgtagagcagccatggtagattttcgaagaaacagaaggcaaagcttcgatcttgt  10411400                   --------->HSFB2a(2)                   <---------HSFB2a(2)                              --------->ANAC58               <---------GLK1(1)                             ---------->DOF2               --------->GLK1(1)                    <---------ANAC58--------->ANAC55(2)         <----            --------->ANAC58             --------->ZAT14 --------->At4g35610*TSS              -------            --------->ANAC58      <----------DOF2   <---------ANAC58--------->ANAC58 ------------>CBF  <---------MYB52(1)--------->LBD16      <---------ZAT14 <---------At4g35610<---------------------WRI1   atcggtttgggagtaagaaatccagaaaaacccagccttttagtaaactatatttcttgagctcaaagacaagtattgggcgataaatgcaatagccaac  10411500                                                                               ----------->GT1                                                                           <------------CBF                                                                           --------->ARR14(2)                                                                           <---------ARR14(2)                                                                         --------->LBD16                                                                        --------------->AGL15                                                                        <---------ANAC58                                                                        <---------------AGL15                                                                        --------->ANAC55(2)                                                                        <---------ANAC55(2)                                                                        <---------ANAC46                                                                        <---------ANAC58                                                                        <---------ANAC55(1)                                                                       <-----------------AGL2                     <---------AHL20(2)                                <-----------------AGL1         <----------DOF2                                               ----------------->AGL1      <------ZmHOX2a(1)       <---------TOE2(3)                        <-----------------AG  ---------->DOF2    --------->AHL20(2)                                ----------------->AG -----ATHB12         --------->AHL20(1)                              <-----------GT1      <----------DOF2 -->MYB52(1)    --------->AHL20(2)      <-----------GT1 ---------->DOF2----------------->AGL3   gattaaaaggacttttatgtaaataaaatactaaggctaaaattacattttgggctcagaaagaatttttgtttccgtattgggttacaatgctttattc  10411600                                                                                           <---------At4g35610                                                                                           --------->At4g35610                                                                                 ------>ZmHOX2a(2)                                                                                --------->GLK1(1)                                                                                <---------GLK1(1)                                                                               --------->ARR14(2)                                                                               <---------AGP1                                                                               --------->ARR11(3)            --------->GLK1(2)                                                  <---------ARR14(2)   <       ---------->DOF2                                       <---------YAB1    <---------ARR11(3)<---    --------->GLK1(2)        <----------DOF2     <---------ATHB12             <---------CCA1(2) -----   actgagaatcaaagaatgtgtctgtttatttcttttgatgctacaaaaccaatgaattgagttatgaaggctatattagtggatctctctgtctgctact  10411700                                                                                             <-------                                                                                             --------                                                                                        <<<<<<<<<<AtWER                                                                                      --------->ZAT2                                                                             <---------ARR11(3)     ------>MYB46(1)                                                         <-----------ARR10-------     ------>MYB83                                                            --------->ARR14(2)   <---------MYB46(2)                                                        --------->ARR14(3)   <---------MYB59                                                           <---------ARR14(2) -----------GT1                                                     <----------DOF2   <---------ZAT2 ------ICU4            --------->YAB1                      <----------DOF2   --------->ARR11(3) ---->ICU4 <---------ATHB12                          <---------GLK1(1)       <---------ARR14(3)   tattaccaaacaaatgaagaaagaatcatagtcttgaagaaacagagtttgtaagaattctctttagttcctttctcaatatcttcccagttggagattt  10411800                                                                     <---------ICU4                                                                    --------->ICU4                                          --------->ALFIN1         <---------AHL20(2)                                        <---------ANAC46     ----------->GT1           <---------YAB1         <---------WRKY18(1)            <---------ANAC58--------->ANAC55(1)          <---------ICU4        --------->WRKY12        ------>MYB46(1)         <---------ANAC55(2)          --------->YAB1        --------->WRKY45        ------>MYB83            --------->ANAC58             -------->HAHB4        --------->WRKY38(1)<---------ALFIN1             --------->ANAC55(2)         --------->ICU4 --ARR11(3)               ------>ZmHOX2a(1)             --------->ANAC58           <---------TOE2(3) ->ARR11(3)          <----------DOF2    <---------ANAC58--------->ANAC46       --------->TOE2(3) -->GLK1(2)       <---------ALFIN1 ------>ZmHOX2a(1)<<<<<<<ZML2   --------->YAB1  --------->YAB1   tggtatagagttgaccatcaccactttcctcaccttcctgtagggtgcaacctagaacacgtaatgtataataatgtattacattaatgatcagtgtttt  10411900                                           --------->At4g35610                                    --------->TOE1(2)                                    --------->TOE2(2)                                    --------->TOE1(3)                                   ----------->RAV1(2)                                  -------->P                                       <---------ANAC58                                 ------>MYB83                                      <---------ANAC58                                 ------>MYB46(1)                                   <---------ANAC46             --------->ICU4    <---------MYB111(1)       <-----------GT1   --------->ALFIN1        --------->ANAC58       <---------MYB52(2)   <---------ANAC58   ---------->DOF2         <-----        --------->ANAC58       <---------MYB46(2)   <---------ANAC58 --------->HSFB2a(2)       <-----       --------->DAG2          <---------MYB59<-------TEIL           <---------HSFB2a(2)      -------      ---------->DOF2      <---------PCF2 --------->ANAC58         <---------At4g35610      ---------   <----------ID1    --------->ATHB12     --------->ANAC58         --------->At4g35610    <---------LBD16   gaaatgggaaaagccattttgaattagtgggaacctaacctgagaagctacatagcttattacatcttcttctgaaagtgttgtttcttgtctccggaca  10412000  Previous    Next  AGI:  At4g19006.1    Description:  26S proteasome regulatory subunit, putative (RPN9). similar to 26S proteasome regulatory subunit, putative (RPN9) [Arabidopsis thaliana] (TAIR:AT5G45620.1); similar to RPN9 [Nicotiana benthamiana] (GB:ABB18115.1); similar to Os03g0214600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049372.1); contains InterPro domain Proteasome component region PCI (InterPro:IPR000717) Range:  from: 10409194    to: 10411476    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g19010.1    Description:  4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein. Identical to 4-coumarate--CoA ligase-like 6 (4CLL6) [Arabidopsis Thaliana] (GB:Q84P24;GB:O49414;GB:Q8GYV8); similar to OPCL1 (OPC-8:0 COA LIGASE1), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G20510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67052.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) Range:  from: 10411501    to: 10414260    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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