Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              <------ZmHOX2a(1)                              <---------ANAC58                              <---------ANAC55(2)                              --------->ANAC55(2)                              <---------ANAC55(1)                              <---------ANAC46 --------->ATHB12        <---------GLK1(1)           <----------DOF2    <---------ANAC58<---------YAB1  <------ZmHOX2a(1) ---------->DOF2             <-------TEIL <---------ANAC46  <---------TOE2(3)           ------->TEIL   aaaaaaagagaaactttgaagaagagtttgatacgtgaagtatggaggataattgaagaattgaggaagcttgaaatcagccaatttctgcatctttgga  10408600                                                                                --------------->AGL15                                                                               ----------------->AGL3                                                                               ----------------->AGL2                                                                             --------->GLK1(1)                                                                             --------->GLK1(2)                                                                            <---------GLK1(2)                                                                      ---------->DOF2                                       --------->KAN4(2)           --------->ANAC58                 --------->AHL20(2)   <---------KAN4(1)            --------->ANAC58    <-----------ARR10                 --------->KAN4(1)          --------->MYB52(1)    --------->ARR11(3)        --------->ATHB12  <---------ARR14(2) --------->ANAC46            <-----    <---------ARR11(3)     <---------At4g35610  --------->ARR14(2)<---------TOE2(3)         ---------   cctcaatatctattcacaaataaaaacagagctcattggattattctgcaaatatgctaattcgaattaacgcaaagagattcccaaaatagctctaacc  10408700                                                                                       <---------ARR11(3)                                                                                       --------->GLK1(2)                              --------->GLK1(1)                                    --------->YAB1                      --------->ATHB51                                            <<<<<<<<<ARR2                      -------->ATHB1                 --------->TOE2(3)            <---------ATHB12      <-----------GT1 --------->ATHB12            ----------->RAV1(1)           --------->WOX13(1) -------MYB.PH3(1)   <---------YAB1      --------->AtMYB61                     --------->MYB46(3)   - -->HVH21            --------->ICU4  --------->MYB46(3)                --------->LBD16 --------->ARR11(3)   gattcaattttcgattttgaagcattattgagaaatcgaatcaccaaaaccccaacattagaaatctaaaacccagaaacaacaatcaaaatctattgtt  10408800                                     ------>ZmHOX2a(2)                                    <------ZmHOX2a(2)                                    --------->CCA1(2)                                   <---------AGP1                                   --------->ARR14(2)                                   <---------ARR14(2)                                   <---------ARR11(3)                                      --------->LBD16                                   --------->ARR11(3)                                     --------->HSFB2a(2)                                   --------->AGP1                                         <----------                                  <---------CCA1(2)           --------->MYB46(3)         <---------LBD16                                 ----------->ARR10           --------->At4g35610         --------->LBD16                             <---------GLK1(1)           ------->GAMYB          --------->ARR11(3)       ---------->DOF2--------->HSFB2a(2)             ----------->RAV1(1)       <---------ARR11(3) -------->LBD16       <---------HSFB2a(2)        --------->WOX13(1)      ------>ZmHOX2a(2)<---------HSFB2a(2)   cccagagaagaaagctatgtttttgtagaagaaatcagatctggattatgtcaatccaacagcatctaccgatgatccctaaaatctattccccagaaga  10408900                                        <---------ZAT2                            <---------At4g35610                             <---------ARR11(3)                            --------->At4g35610  <----------DOF2            --------->ARR11(3)                   --------->ZAT2       <---------At4g35610    --------->ZAT14                     <-                   <---------At4g35610  --------->ZAT2         <---------ZAT14         ----------->GT1                   --------->At4g35610  --------->At4g35610    --------->ZAT18        ----------->GT1                <---------ZAT2     --------->At4g35610     <---------WRKY18(1)--------->TOE2(3)  ---- -RAV1(2)       <---------At4g35610<---------At4g35610    ----------->HVH21<---------GLK1(2)    <----   caaaacatttagagagcgagcagcttacgaagcagacagatgagctggagtctttgagacttgactgctctgtttcaaaatctcaaaatcggaaaatttt  10409000                    <---------ICU4                    --------->ATHB12                   <---------YAB1     --------->ANAC58                             <-----------GT1     --------->ANAC58  *TSS <XXXXXXXXXXXXXXXXXXXXXMIR402 --------WOX13(1)  --------->ICU4                <-----------GT1     <---------HSFB2a(2) ----->ATHB12   <---------YAB1           <-----------GT1    <---------DAG2               <-------TEIL -----YAB1    ----------->GT1     <---------AHL20(1)        <----------DOF2   ------------>CBF   gattgaaacgaaacgatggtgataattggggtttaatatgttttgactattttacccttacacttttcatttcagaagttgacaatttggattcattcca  10409100                                --------->YAB1                        --------->O2                        <---------TGA1a                                                 <---------TOE2(3)                        =======================bZIP_DOF                                --------->MYB52(1)                        <---------O2                                                 <---------MYB52(2)                        --------->TGA1a                                            --------->ZAT6                        --------->ANAC58                                   ---------->DOF2                        --------->ANAC46                                --------->TOE1(3)                        --------->ANAC58                    <---------ARR14(2)   ----------->RAV1(1)                    <-----------GT1 ---------->DOF2         --------->ARR14(2)--------->ANAC46    <---------TOE2(3) <---------ALFIN1                 --------->AtLEC2 --------->TOE2(3)      ------   ctatttgagatttatgagtttttcacacgtctaataacaaaagttggaccatttgttatgcaaataggcttaagccttaaaggcaacactaacgatgaaa  10409200                                                                         ---------->DOF2                                                                     --------->TOE2(3)                         <---------DEAR4(1)                   --------->TOE2(3)               ------>ZmHOX2a(1)                 <-------TEIL               ---------->DOF2   <---------MYB59                -------- ->TEIL   <------ZmHOX2a(1)         ---------->DOF2          <---------ANAC55(2)        <---------AHL20(2)   ctcaacttaataggatagattcatgtgtctgtggagaacaaagttcaaaagtataactgtaatacctaaaaacttaaaaggaagttgcatttaatcctca  10409300                                                                             --------->ALFIN1                                                                           --------->At4g35610                                                                           <---------ANAC55(2)                                                                         ============================RAV                                                                         <-----------RAV1(2)                                                                        <------ZmHOX2a(2)                                                                       <---------ARR11(3)                                             ==================================HOX2a_HOX2a                                       ---------->DOF2                 --------->ARR11(3)         --------->GLK1(2)        ----------->GT1           <---------At4g35610     <-----------GT1             ----------->GT1            --------->At4g35610        <------NtERF2  ----------->GT1              --------->ZAT14---------->DOF2    ----------->RAV1(1)------>NtERF2 ->TOE2(3)               --------->MYB52(1)  <------ZmHOX2a(1)   ====================RAV ----------->RAV1(1)   gagaatgttacaatctgtagcttaaacgaacagtgaaggaaaaaagaggaaagaagagtttaagctgcaacaagatcaggtgtctcggcctcaacagata  10409400                                                                                   <---------ZAT18                                                                                   ------>NtERF2                                                                                  <---------ANAC46             --------->TOE2(3)                           <---------LBD16          <---------ANAC58             <---------DAG2                            ===================HOX2a_HOX2a        --------             --------->TOE1(3)                         ------>ZmHOX2a(2)        <---------ATERF1(1)           ------->TEIL          <---------ZAT2       <---------At4g35610     <-------GAMYB  --------       --------------->AtSPL8    <---------At4g35610 <---------ARR11(3)------->GAMYB         --------      <---------ANAC58   --------->At4g35610     <---------ANAC58     <---------ALFIN1       <-------      <---------ANAC46   --------->ZAT2------>ZmHOX2a(2) --------->At4g35610 <---------MYB46(3)      <---------ANAC58   <---------ZAT2===================================HOX2a_HOX2a        --------    <---------ANAC46     <---------At4g35610     <---------ANAC58  ------>ZmHOX2a(1)         <-------   --------->ALFIN1    <-----------RAV1(2)    <---------ATHB12    <---------MYB59 <---------ANAC58   acaatgtggtgtgaaccttatcgacccagctgtctagctgatccctcaatgacttgatctgcggtattcctaacaccctcggttgcgcccatgagacgta  10409500  Previous    Next  AGI:  At4g19003.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO63315.1); contains InterPro domain ESCRT-II complex, vps25 subunit (InterPro:IPR008570); contains InterPro domain ESCRT-II complex, vps25 subunit, C-terminal winged helix (InterPro:IPR014040); contains InterPro domain ESCRT-II complex, vps25 subunit, N-terminal winged helix (InterPro:IPR014041) Range:  from: 10407451    to: 10409023    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g19006.1    Description:  26S proteasome regulatory subunit, putative (RPN9). similar to 26S proteasome regulatory subunit, putative (RPN9) [Arabidopsis thaliana] (TAIR:AT5G45620.1); similar to RPN9 [Nicotiana benthamiana] (GB:ABB18115.1); similar to Os03g0214600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049372.1); contains InterPro domain Proteasome component region PCI (InterPro:IPR000717) Range:  from: 10409194    to: 10411476    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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