Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <---------ICU4                                                                                   <---------YAB1                                                                                   --------->ICU4                                             <---------ANAC55(1)                 --------->YAB1                                             <---------ANAC46              --------->MYB52(2)                                   <---------ZAT2                       --------->TOE2(3)                                   --------->ZAT2                      --------->ANAC55(2)                                  --------->ANAC46                     <---------ANAC55(2)                                 --------->LBD16                       --------->ANAC58           ---                             --------->TOE1(2)     --------->ANAC58    <---------ANAC46       ------- -----HSFB2a(1)              --------->TOE2(2)     --------->ANAC58    --------->ANAC58   ---------->DOF2   cctcgctctctctcgctaatttggatagatacctccgagcaagggttaagtgtaagcctcgtttgtatttgtaacgtaagttgtcatcatcgtaaagagt  10356100                                                         <---------YAB1                                                      --------->ICU4              <---------AHL20(2)                    --------->YAB1          <---------ICU4                            <---------ICU4          --------->ATHB51<------ZmHOX2a(1)         <--------HAHB4         ------->TEIL          --------->AHL20(2)                       <---------YAB1         <-----------GT1          <---------AHL20(2)               --------->ARR14(2)     <-----------RAV1(1)   ----------->GT1      --------->ANAC58  --------->ARR14(2)    <----------DOF2        --------->HSFB2a(2) ------>WOX13(1) <----------DOF2    <-----------GT1<---------ATHB12  <---------MYB46(3)<---------HSFB2a(2) ---->GT1--------->ICU4 --------->ANAC58  <---------GLK1(2)   <---------YAB1       <---------GLK1(2)   taatcaggttaattattttctttagtaaggaatgtgttttacccgattcttctatcattatgttatctttgttgttgaacctctcgattctcgaccttgg  10356200                          ---------->ID1                    <---------AHL20(2)                   <---------YAB1                 <---------AHL20(2)                 <---------ICU4                 -------->ATHB1                 --------->YAB1                 --------->ATHB51                 -------->HAHB4                 <--------HAHB4                <---------YAB1                <---------ATHB51                       <---------ANAC46                --------->ICU4                         <---------ANAC58                  --------->ICU4              --------->YAB1          <---------MYB46(3)                            --------->YAB1             <---------YAB1   <----------DOF2          <---------ANAC58           <------------CBF             --------->ICU4   <---------DAG2       <----------DOF2            <------MYB83--------->ATHB12         ----------->GT1 <-----------GT1      <----------DOF2                 <------MYB46(1)     ---      <------------CBF  ----------->HVH21  <---------YAB1                <---------AHL20(2)       <--   attttgaaaattggtataattattatttgaccctttttgtttgttatgcttttctttgtgtgtgtgtgtgtgtgtttatttggttattgtaatctttggg  10356300                                                        <---------GLK1(1)                              <---------ANAC58       <---------TOE1(3)                              <---------ANAC46       <---------TOE2(3)       --------->ALFIN1             <---------MYB46(3) <---------ZAT6  <---------ANAC58        --------->DAG2          <---------ANAC58    <---------bZIP60(2) <---------MYB52(1)   ---------->DOF2          <----          <---------ANAC58    <---------ANAC58  <---------ANAC58 --------->At4g35610   <----------DOF2        <---------YAB1     --------->ALFIN1  <---------GLK1(1)   ----------->GT1      <---------ANAC58 ------>GLK1(1)   --------->HSFB2a(2)        --------->GLK1(1)   <---------At4g35610  <---------ANAC58 -------GLK1(1)   <---------HSFB2a(2)       <---------ARR14(2) <---------ZAT18  ------->TEIL   <-----   aattcttgttttgagtggttttggaagatgtgtcgtgttagatggggatttcgttagggtttctgtgagctaaaaaagggtgtatgtttctttccctaat  10356400                --------->AHL20(2)                <---------AHL20(2)                               ---------->DOF2               --------->AHL20(1)                       --------->DAG2                ------->TEIL               <---------AHL20(2)                      --------->DAG2           --------->ICU4        ----------->GT1                               ---------->DOF2         <---------At4g35610      <---------MYB52(1)        <---------ICU4      --------------->AGL15     <---------ZAT2    <---------ANAC58         --------->YAB1         <---------------AGL15   --------->ZAT18    <---------ANAC58        <---------YAB1         ----------------->AGL1  <---------ANAC58 -----WOX13(1) --------->AHL20(2)                  ----------------->AG    <---------ANAC58        <- -------CBF    <---------AHL20(1)          <---------AtLEC2  <--------P    <---------ANAC46      <---   tgattttcgtttgtaaatttattttgcagaatgataactacattttcatggataccaaaaggggttgcaaaggccatgcgtgctgatgaacttccttcta  10356500                                            --------->YAB1                                            -------->HAHB4             --------->ZAT18               <---------YAB1      <---------------------WRI1<---------AHL20(2)    --------->GLK1(1)          --------->ICU4  <------ZmHOX2a(1)       ----------->GT1  --------->ICU4 -----ZmHOX2a(1)        <-------GAMYB    --------->YAB1                            ----------->GT1 ------TOE2(3)   ---------->DOF2<---------ICU4        >>>>>>>>>TBF1 <------ZmHOX2a(1)   aggaggaaatcgaaatgcacaaagacagttgtaaatatttcagtaatgatacagaagaagaagagaccgaggatgaagaagagaatggtgaagttgctca  10356600                                                                               <---------At4g35610                                                                               --------->At4g35610                                                                               --------->ZAT2                                                                               <---------ZAT2             --------->At4g35610                                             <--------P          --------->At4g35610        --------->ANAC58                     <---------TOE2(3)          <---------At4g35610      ---------->DOF2  <<<<<<<<<TBF1    --------->ICU4            ------ ---------->DOF2      ----------->GT1--------->ANAC58                <---------YAB1        ----------   tgcgaaagccgtagcagaagagtttggaaaatcatccaaaagcaagaatgtttcttcttcaatggagcttgatgatgaggtagctgagggtttgaaagaa  10356700                                       <------MYB83                                       <------MYB46(1)                                      --------->MYB59         <---------ICU4             <<<<<<<<<MYB98                          --------->GLK1(2)     ----------->GT1      <---------YAB1                                   <---------GLK1(2)    <---------------------WRI1      <---------MYB52(1)               --------->REM1(2)             <- --->ARR11(3) <---------YAB1    <--------P                  ------>ZmHOX2a(1)                    <--- >DOF2--------->YAB1    <------ZmHOX2a(1)   <---------AHL20(2)      --------->ALFIN1          <------   ctcgacatggataattacgatgaagaggatgatggtaagttaggttttaattctttgttctcctatagatgtgtagagaatctcaaaactcaatttatgc  10356800                                                                                ------>ZmHOX2a(2)                                                                               <------ZmHOX2a(2)                                                                              --------->ARR14(2)                                                                              <---------ARR11(3)                                                                              <---------ARR14(2)                                                                              --------->ARR11(3)                                                                              <---------ARR14(3)                                                                         <------NtERF2                                                                         --------->ALFIN1                                                                       --------->ALFIN1                                                                       =====================bZIP_DOF                                                                       <---------ANAC58                                                                       <---------ANAC46      <---------ZAT18                                                  <---------ANAC58      --------->ZAT18                                               --------->LBD16     <---------ANAC46                                              <---------ANAC46    --------------->AtSPL8         <---------ANAC46            --------->At4g35610             ------ --------YAB1                      <---------YAB1        --------->ICU4<---------TGA1a   --------->YAB1 -------DOF2             >>>>>>>>>>>>>>>>>LFY   <------ZmHOX2a(1) <---------LBD16<----------DOF2 ---YAB1               <----------DOF2       <---------LBD16   <---------At4g35610   <---------------AGL15   tttcattgtgtacaactaaattagactttccattgttgtgtttggattcaggaattgaaatttttagctccgggcgtggggatctttactataagagtaa  10356900           <---------ARR11(3)           <---------ARR11(1)           --------->ARR14(2)          <---------CCA1(2)                     <----------DOF2              <-----------GT1       ====================================HOX2a_HOX2a                     --------->GLK1(1)       ------>ZmHOX2a(2)                        <---------DAG2            <---------GLK1(2)       <-------TEIL                     --------->ZAT6                    --------->ARR14(2)      =====================================HOX2a_HOX2a                  --------->LBD16      <------ZmHOX2a(2)                 <-----------GT1               <---------LBD16     --------->ARR14(2)             ------>ZmHOX2a(1)                <---------At5g28300     <---------ARR14(2)             --------->ICU4                   --------->MYB52(1)     ------->TEIL          <---------REM1(1)--------->ZAT14         <-----------GT1     --------->ANAC46 --->MYB52(1)           --------->ICU4 <---------YAB1   --------->AHL20(2)<---------ARR14(2)   cgagatggatccatatctcaagagaaatgatgtaagtccttatcactaaactttttttttatatacagagttaccggattttctatatagacacaataac  10357000  Previous    Next  AGI:  At4g18900.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G18905.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70683.1); similar to Os01g0924300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045246.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 10356476    to: 10359089    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version