Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->ANAC46                            <---------MYB52(2)          --------->LBD16                       ------>ZmHOX2a(2)         <---------HSFB2a(2)                   <------ZmHOX2a(2)      <---------TCP20                         <---------ARR11(3)                  --------->ANAC58      --------->ARR14(2)                      --------->ARR14(2)                --------->MYB46(3)      <---------ARR14(2)                      --------->ARR11(3)      <---------TOE2(3)      <-------  --------->SPL7                              <---------ARR14(2)<---------ARR11(3)--------->ANAC58 ---------SPL7                                --------->AGP1    --------->ARR11(3)--------->ANAC46<-- -------------AtSPL8                  ---------->DOF2  --------->MYB46(3)<--------P         <------NtERF2 ------------>AtSPL3       <---------AHL20(2) <---------AGP1  ------>MYB46(1)   <xxxxxxxxxxxxxxxxsmallRNA(s) -------------AtSPL3      --------->AHL20(2)----------->ARR10 ------>MYB83<-------TEIL  <-----------HVH21   gcggtacggttccacaaaaccggtttgaattaatatgaaacaaagcgagatctgttaacaaaccaagctcttgaggtagataaccagcaatgtcagcgtg  10278100                               <---------ANAC46                           <---------LBD16                           ------>ZmHOX2a(2)                      --------->ANAC58                      --------->ANAC58                   <---------SPL7                <------NtERF2 <---------MYB52(1)               ------------------>SPL14               <---------ATERF1(1)<---------MYB52(1)               ------>NtERF2 --------->LBD16              --------->DEAR3(1) <-------GAMYB              ----------->HVH21<---------DEAR3(1)             --------->ATERF1(1)<---------DEAR3(2)             --------->LBD16            ------>NtERF2--------->ARR14(2)              <---------DOF5.7(2)            --------->LBD16--------->ATERF1(1)          --------->ARR14(2)           <---------LBD16<------ZmHOX2a(2)           --------->At5g28300                        <---     ------>ZmHOX2a(2)--------->ANAC55(2)          <---------ZAT14                              <----    <------ZmHOX2a(2) <---------ANAC55(2)        <---------ZAT14                                -----   --------->AGP1 <---------DEAR3(2)             --------->ZAT14    <---------ARR14(2)   <------ZmHOX2a(2)   <---------AGP1<---------------AtSPL3        <------NtERF2  <---------DEAR3(1)        <---------ARR14(2)   --------->ARR11(3)--------->SPL1(2)        --------->LBD16<---------LBD16       <---------ARR14(2)   <---------ARR11(3)--------->SPL7     ---------->DOF2 --------->ZAT14            --------->ARR14(2) --ANAC46 <---------LBD16<---------ARR14(2) <---------LBD16--------->ANAC46  --------->YAB1   <------ -------ANAC46<---------DEAR3(1)<---------MYB46(3) --------->ZAT18  --------->ARR14(2)  --------->ARR14(2)   gtttagatctattccggcgacggtacggatccggcggttatctaaagccggagcacagtaaacgccggtgtaactgcaaacatcagaaccgatccagttt  10278200                                                                                   --------->ZAT6                                                                              <---------HSFB2a(2)                                                                              --------->HSFB2a(2)                                                                              <---------HSFC1(1)                                                                     <---------ANAC58             <--         <---------ANAC46              --------->ZAT2                <---------ANAC58            <--- ----GAMYB                  <---------ANAC58                         <---------ANAC46     --------->CCA1(2) -----MYB46(3)              <---------ANAC46              <---------ICU4  <---------GLK1(2)      <--- ---->MYB52(2)              <---------ANAC58            --------->ANAC58  <---------ARR14(2)     <--- ---MYB52(1)   <------ZmHOX2a(2)       <---------ZAT2   --------->ANAC58  --------->ARR14(2)    -----   gttgtgaagttgtttggatcagagagaatagcttgtttccaagcttgaagagctatgtaagcatttcgaagtcgtggattctcgaagactagagatgggt  10278300                        --------->DEAR3(1)                       <------NtERF2                                                         --------                     <---------ETT(2)                                                     ------>ZmHOX2a(2)                     <---------DEAR3(1)                                                  <---------GLK1(1)                    --------->ATERF1(1)                                                  --------->GLK1(1)                    --------->SPL7                                                      <---------ARR11(3)                 --------->ATERF1(1)                                --------->RAP2.6(2) --------->ARR11(3)                ------>NtERF2                                      <---------LBD16      --------->ARR14(3)                --------->LBD16                              --------->ATHB12           --------->ARR14(2)            --------->ANAC46                              <---------ANAC46              <---------ARR14(2)    <---------DDF1--------->DEAR3(1)                      <---------ANAC58             <---------GLK1(1)   <---------ETT(2)<-----------HVH21                      <---------ANAC58         <------NtERF2   --------->ETT(2)<---------ATERF1(1)                 <---------MYB52(1)        --------->ETT(1) -------DOF5.7(2)<------NtERF2      --------->LBD16   --------------------->WRI1 <---------ANAC46 ------WRKY12   <------NtERF2  <-----------HVH21    <---------TOE1(3)          <-----------HVH21 ------WRKY45   <---------At4g35610<------NtERF2    <---------TOE2(3)--------->LBD16   --------->GLK1(1) ------WRKY38(1)--------->At4g35610<---------ANAC46<---------DOF5.7(2)        <-----------RAV1(1) --- ---->WRKY18(1)--------->DEAR3(1) <---------LBD16 --------->WRKY12 --------------->AtSPL3<------ZmHOX2a(2)   caacgtcgacattctcgccgcggtcgccgaactcgtcgcggaagtagagaagttgacgttgtgtgattagccggacttcattgtcggagagatctccatt  10278400                                                                     <---------TGA1a                                                                     <---------O2                                                                     --------->O2                                                                     <---------ANAC58                                                                     <---------ANAC58                                                                     <---------ANAC46                                                                     --------->TGA1a                                                                     --------->ANAC55(2)                                                                     <---------ANAC55(1)                                                                     <---------ANAC55(2)                                                             <---------ARR11(3)                                       ----------->GT1       --------->ARR11(3)                                  >>>>>>>>>TBF1      <----------ID1 <-----------------------TaNAC69(2)                         <---------ANAC58      ================================bZIP_DOF            <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---------->DOF2<------ZmHOX2a(2)        ---------->DOF2  <---------ANAC58 ----------->GT1---------->DOF2         --------->YAB1 ------->AGL15        --------->ARR11(3) ----------->GT1 ======================bZIP_DOF ------->DOF2         <---------ARR11(3)------------------------>ANAC81          <---------ICU4 <----   gaaagtaagtgaaagagagtaagagatacttgtgaagaagaaggtgataaaaagaagaacaaagatcagagacgtgttcttcatcatcatcttcgtcttc  10278500                   --------->ATHB12             --------->ANAC58             --------->ANAC46             ----------->GT1      --------->ANAC55(2)<---------ARR14(2)                         --------->GLK1(2)      --------->ANAC46   --------->ARR14(2)----------->GT1          <---------ARR14(2)         <----- -----ICU4   --------->ANAC58        >>>>>>>>>TBF1                 <---------GLK1(2)           ------   attacttcacataacaagacatcagtggatttgaaggaagaagaagggtaaaatgggaaatgtaagtgagaatctctataagtgaagaagtaatgtgtga  10278600                                     <---------ZAT2                                     --------->ZAT2                                     --------->At4g35610        <---------YAB1               <---------At4g35610                   <<<<<<<<<TAC1       ------      --------->YAB1         <----------DOF2                        --------->YAB1           <<<<<<<<     --------->ICU4       <---------ARR11(3)         <---------ARR14(2)  --------->ZAT6    <--------- ----ZAT14                --------->ARR11(3)         --------->ARR14(2)<-----------GT1 --------->ZAT6 --->REM1(2)         --------->CCA1(2)  ---------->CDC5            <---------YAB1    <-----------GT1   agagggaattataagtgagagagagacaggtctttgcacagctcagccctattcatatactcttcacttattataacactgtctgttttacactgtcaaa  10278700                                                --------->AHL20(2)                                            --------->AHL20(2)                                            --------->YAB1                                            <---------AHL20(2)                    --------->ALFIN1   ------------>CBF              <---------WOX13(1)      --------->MYB52(1)             <------------CBF         ------>MYB83           <---------AHL20(1)         ------>MYB46(1)     --------->YAB1 <---------ANAC58 --------->MYB55(1)                                         <----     --------->TOE2(3)              <---------MYB111(1)                                        <-----    ----------->GT1 <---------ANAC58<---------MYB46(2)          <----------DOF2               -------    <---------ZAT6<---------ANAC46  <---------MYB59             <---------DAG2               <------- ---->DOF2 --------->AHL20(2)      <---------ANAC55(2)      ------>ZmHOX2a(2)                -------- <WRKY18   --------->AHL20(1)      --------->ANAC55(2)  <---------YAB1                     <---------ANAC55(2) --HVH21   <---------AHL20(2)    <-----------GT1<---------AHL20(2)         <----------DOF2 --------->ANAC55(2)   agtgtaatgttaattaattgatgtgtgtccatgaattacctaacaattatataaatgtatgatcgactttttggtttcttttttgaactaatcacatgat  10278800                                --------->ARR11(3)                               --------->ATHB12                              <---------YAB1                              <---------ATHB12                  <---------AHL20(1)       --------->ZAT6                                     <------      <-------TEIL--------->AHL20(1)    <---------WRKY12                                   --------->MYB111(2)     <-----------GT1          --------->ICU4           --------->ATHB12                    ---------- --------->AHL20(2)<---------YAB1       <---------WRKY45                                   --------->MYB46(2) -----WOX13(1)    <---------AHL20(2)    <---------WRKY38(1)                             <------MYB46(1) -------CBF       --------->AHL20(2)   --------->WRKY18(1)                              <------MYB83 -->ATHB12       --------->YAB1<---------ICU4         <---------YAB1                   --------->MYB59 --YAB1--------->ANAC55(2)   <---------TOE2(3)  <---------TOE2(3)                      --------->MYB46(2) ->ICU4--------->ANAC46    <---------AHL20(2)  ---------->DOF2       <-----------GT1   --------->MYB111(1)   tgattatatacgttacaaattataattgtttaatgattttggtcaacactaaagttttgattagagacaatttacattgctctaggcattaggtagttaa  10278900                                    --------------->AGL15                                    <---------------AGL15                                   <-----------------AGL1                                   <-----------------AG                                   <---------ANAC46                                   <-----------------AGL3                                   <-----------------AGL2                               <---------ANAC58                               <---------ANAC58                             <-----------GT1                            <---------YAB1                          --------->ATHB51                          <--------HAHB4                          -------->HAHB4                          <---------ICU4                          -------->ATHB1                         <---------ATHB51                         <---------YAB1                       --------->YAB1                       <---------ICU4 --------->ARR11(3)                               ---------->DOF2          <---------ICU4 --------->ICU4                     <-----------GT1        --------->MYB59          --------->ATHB12--------->YAB1               <---------YAB1        --------->AHL20(2)     - ---AHL20(2)          --------->AHL20(2)          <----------DOF2            <---------AHL20(2)   --- ->GT1 --------->YAB1 <---------AHL20(2)         <---------DAG2             --------->AHL20(2)-------   ttttgtttagcatcatttcaactattaattattacttgctgatattggaaaccttttgtgattagccatacatttggattaaattttggtaaagacttgt  10279000  Previous    Next  AGI:  At4g18670.1    Description:  leucine-rich repeat family protein / extensin family protein. similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT3G24480.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G13340.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65553.1); contains InterPro domain Leucine-rich repeat, N-terminal (InterPro:IPR013210); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Atrophin (InterPro:IPR002951) Range:  from: 10275472    to: 10278502    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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