Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  --------->MYB52(1)    ------>ZmHOX2a(1)                          ----------->HVH21    <----------DOF2                          <---------At4g35610                                -----  ------>ZmHOX2a(2)                          --------->At4g35610                           --------->YAB1 <------ZmHOX2a(2)                           --------->LBD16                              <---------ATHB12 ------>TEIL                             <---------ALFIN1                                 --------->HSFB2a(1) -------->ARR14(2)                     <---------ALFIN1                                   --------->HSFC1(2) ---------ARR14(2)                <---------ZAT14                             ---------->DOF2   <---- ----AtLEC2                       --------->ZAT14                  <----------DOF2 <----------ID1   tggatccttttaatgagtcgcatcccattagaagactgtagccactccgctaacagagcataatcaactctttcgctatcgaaagaagacgaatcatcct  10216900                                                                                     <-------MYC2                                                                                     ------->MYC3                                                                                     ------->MYC2                                                                                     <-------MYC3                                                                                    <---------ANAC58                                                                                    <---------TGA1a                                                                                    --------->ANAC55(2)                                                                                    <---------bZIP60(2)                                                                                    <---------ANAC58                                                                                    <---------ANAC46                                                       --------->LBD16              --------->TGA1a                                                      <---------HSFC1(1)            --------->O2                                                      --------->HSFC1(1)            <---------O2                                                      <---------HSFB2a(2)           <---------ANAC55(2)    <---------GLK1(2)                             <----------DOF2        <---------TOE2(2) <-----------GT1                                  ============================================bZIP_DOF ->ZmHOX2a(1)       --------->MYB46(3)    <---------GLK1(2)             <-----------RAV1(2) -----YAB1   <----------DOF2          ---------->DOF2 --------->HSFB2a(2)--------->LBD16          ---   gattcacattctctcctttgaaaccactaaaacccgaatcgaaagatgctctctttccagaaactaatcgaaacccaggtaatctcacgtgtctctgttc  10217000                                                                                       <--------P                                                                         <---------ARR14(2)    <-----                                                                         --------->ARR14(2)    <-----                                                               <---------GLK1(2)      <-------GAMYB <                                                               --------->ARR14(2)    <---------MYB46(3)                                                               <---------ARR14(2)  <---------LBD16---                                                             --------->LBD16   --------->ARR14(2)----                                               <---------TOE1(2)--------->GLK1(2)--------->ATERF1(1)-                                         --------->ARR14(2)--------->At4g35610 <---------ARR14(2)----                                    <---------DEAR3(1)    --------->MYB52(1)   ----------->HVH21 ----                               --------->ARR14(2)        <---------WRKY38(1) --------->LBD16  -------        --------->ARR11(3)     <---------ARR14(2)<------ZmHOX2a(1)      <---------GLK1(1)<------MYB46(1)    <---------MYB52(1) <---------ZAT6    <---------ARR14(2)<---------LBD16 <---------LBD16    <------ --->ZmHOX2a(1)        ----------->GT1<------NtERF2    <-----------HVH21--------->GLK1(1)<------MYB83   ctctcgcttagttcttgaatcgctactgtaacatatcgtcggagatttgtaggattgagtcaccggaatctctgaaatccggagacgcggttggattaac  10217100                                                            <------NtERF2                                                           --------->LBD16                                                           ----------->GT1                                                          --------->RAP2.6(2)                                                          --------->RAP2.3(2)                                                          --------->LBD16                                                         <---------LBD16                                                         <------NtERF2                                                        ------>NtERF2                                                        --------->LBD16                                                   ------>ZmHOX2a(2)                                                  <------ZmHOX2a(2)                <------NtERF2                     <---------GLK1(1)               <---------RAP2.3(1)                --------->GLK1(1) ----TOE1(3)  --------->ETT(1)                   --------->ARR14(3) ----TOE2(3)  <---------DEAR3(1)                 <---------ARR14(2)                          -------- ---------DOF5.7(2)      ---------->DOF2         <---------ARR11(3)                      <---------AHL20(2) ------>DOF5.7(2)<---------DEAR3(1)              --------->ARR11(3)                     <---------AHL20(2) ----->TOE1(3)<---------DEAR4(1)                 --------->ARR14(2)            --------->ARR11(3) -------->MYB52(1)      <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->ANAC46        <---------ARR11(3) --- ----->YAB1   <---------RAP2.3(3)               --------->GLK1(1)           --------->DAG2   <------- ----->TOE2(3)<---------At1g77200               <---------GLK1(1)--------->AHL20(2) <----------DOF2 -->MYB52(1)  <---------DREB2C(2)   --------->HSFC1(2)--------->MYB46(3)   ---------->DOF2  <-------- -----GT1   <-----------HVH21       <---------HSFC1(2)<---------LBD16   --------->At4g35610 ---------   gataacgaaaacattgtcggcgatggagaaagagaagaagcttcacacagagatctcccgccggaaaaaaaatcagataaagttctcttttttatttatt  10217200                                           <---------bZIP60(1)                                           --------->bZIP60(1)                                           <----------ID1                                           <---------ETT(2)       <------MYB83                                        <---------YAB1            <---------DEAR3(2)                                      --------->YAB1              <---------MYB46(3)                                      <---------ICU4             <---------DEAR3(1)                                      -------->HAHB4            <---------ORA47(1)                                     <---------ATHB51    --------->ARR11(3)  ---------->DOF2                    --------->ICU4      <---------ARR11(3) ->AHL20(2)                      <---------MYB52(1)     --------->CCA1(1) ------>MYB59  *TSS    --------->GLK1(2)----------->TGA1--------->RVE1(1)                         --- --AHL20(2)--------->AHL20(2)   ----------->GT1       --------->YAB1                              --- -AHL20(2) <---------AHL20(2) ------>ZmHOX2a(2)       --------->AHL20(2)       ------>ZmHOX2a(1)  <-- ------>AGL15---------->DOF2<---------ARR14(2) ----------->RAV1(1)<------MYB46(1)               <----   ttggtaaagagaattaaaagtttataatctgatctggtaattatgacgacaacaaataatatctcggtcggtttcaaattcctaagcgagagacaaatat  10217300                                           -------->ABF1                                           ------->MYC4                                           <-------MYC4                                           ------->MYC3                                           <-------MYC2                                           <-------MYC3                                           ------->MYC2                                          ===============================bZIP_DOF                                          <---------ANAC55(2)                                          --------->ANAC55(2)         --------->ANAC46                 --------->O2         --------->ANAC58                 --------->TGA1a         --------->ANAC58                 <---------TGA1a       --------->ANAC46             ================bZIP_DOF     --------->ANAC46               ---------->DOF2                                          --------  <---------ZAT18                 --------->TOE2(3)                                          ------>ZmHOX2a(1)  <---------ZAT14                --------->ANAC46                                            ========  --------->ZAT14                ----------->GT1                                             ======== ------------>AtSPL3            <---------TOE2(3)                            ======================== ------------>AtSPL8         <---------ATHB12    *TSS              ------>ZmHOX2a(1)       ---------- -------------AtSPL8     ------------>CBF <---------O2        <----------DOF2<---------MYB46(3) -------GT1             ------------------------>ANAC81    <---------ALFIN1  <-----------RAV1(1)   acagtacacacacgacttaatatcaaaaccaataaacgtaaaacacgtgtctcatcacttcccactttcctctctgcatttgttgtctctctctcctgaa  10217400                              ------->MYC3                              <-------MYC3                             <---------ANAC55(2)                             <---------ANAC58                             --------->ANAC55(2)                             <---------O2                             --------->O2                             ===================bZIP_DOF                             ===============================================MYC_MYB                             <---------ANAC58                        ----------->HVH21                     ------>ZmHOX2a(2)                                    <---------LBD16                    <---------GLK1(1)                                   --------->ARR14(2)                    <------ZmHOX2a(2)                                  <---------MYB52(1)                   <---------ARR11(3)     <---------WOX13(1)        ----------------->AG        <---- ->LBD16           --------->ARR11(3)<----------DOF2                <-----------------AGL1      ----- ==========================HOX2a_HOX2a --------->WRKY38(1)          <-----------------AGL2 --------->At4g35610 ===========================HOX2a_HOX2a--------->WRKY12            <---------At5g28300 --------->ANAC58 ==RAV         --------->REM1(1) <---------CCA1(2)                 -------->P          --------->ANAC58 ->RAV1(2)<-----------GT1    <---------TGA1a             <----------DOF2<---------ARR14(2)--------->MYB52(1)   aacccttgaattttgctacacgatctctgaaacgtgtctctttgactgacttcaatcttctttatcacttaccgtttctgggttttatgaagcaactgag  10217500                                                                                --------->GLK1(2)    ---------->DOF2                        --------->GLK1(2)           --------->HSFB2a(2)  --------->AHL20(2)          ----------->GT1  <---------YAB1          <---------HSFB2a(2)  --------->YAB1             ----------->GT1  <----------DOF2      --------->ARR14(2)              <-  <---------AHL20(2)  --------->ANAC58     <---------ARR11(3)      <---------ARR14(2)   --------->MYB46(3) -----At4g35610       --------->ANAC58    <---------GLK1(2)    ----------------->AGL1  --------->DEAR3(2) ---->At4g35610      <---------LBD16 --------->MYB52(1) ---------->DOF2<---------HSFC1(1)         <--   ctaataaaaagcttcttcttagactcggaagaagataaaaaacagaatctttattgtttaaagcttccaaattcgagaagagaatttgaaacgaccaagt  10217600         <---------MYB52(1)    --------->KAN4(2)   --------->KAN4(1)   --------->GLK1(1)   <---------GLK1(1)   <----------TaMYB80   <---------KAN4(1)  <---------ARR11(3)  <---------ARR14(2)  --------->ARR14(2)                                                                    --------->At5g28300  --------->ARR11(3)                             --------->DAG2                        ----------->GT1 <------ZmHOX2a(1)                 ------>ZmHOX2a(1)----------->GT1          <----------DOF2 --------TOE1(3)      <----------DOF2     <----------DOF2                   --------->TOE2(3) ------- ---------RAV1(2)     --------------------->WRI1---------->DOF2     ---------->DOF2   ----------->GT1   tcaggatattcgtttcttcgtctactttggtctcttcctcttctctttcgaaaagggtttattctgtcttaaaagaaacctttttgagagggtaaaaaaa  10217700                                                                                         <---------ANAC58                                ----------->GT1                                          <---------ANAC58                         ------------------------>ANAC81                        <-----------GT1                      --------->DAG2                                      --------->ANAC55(2)                     ---------->DOF2                                      <---------ANAC55(2)                    ---------->DOF2                             --------->At4g35610      ------------ --->DOF2 <---------------------WRI1         <---------ATHB12 <-----------RAV1(2)   <<<<<<<<<TBF1   gcttcaattttcagagaaacacaaaaggcagaaacagagaaaaacaaatcatctaattcatgaaacaggtgagaatacatattttcttcttccttggtct  10217800  Previous    Next  AGI:  At4g18520.1    Description:  binding. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G39530.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G53360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61773.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 10215131    to: 10217215    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g18530.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46884.1); contains InterPro domain Protein of unknown function DUF707 (InterPro:IPR007877) Range:  from: 10217349    to: 10220511    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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