Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      <-------TEIL                                    ----------------->AG                            < <---------ANAC58                                   ----------------->AGL1                          - --------->ANAC55(2)                                --------------->AGL15                           - <---------ANAC46                         --------->YAB1                                       <----- <---------ANAC58                        <---------ATHB12                                 --------->DEAR3(1) <---------ANAC55(1)               <---------ARR11(3)                  --------->YAB1   ------->GAMYB <---------ANAC55(2)             --------->ANAC58   <---------------AGL15              --------->ANAC46 -------DOF2  ------>MYB83       --------->ANAC58  ----------------->AGL2              --------->ANAC58 ------DAG2   ------>MYB46(1)--------->ZAT6        ----------------->AGL3              --------->ANAC58   tttacgtgcataaaccaaatcaccaagtctaacacaagaactaatcaaattgttcccaaaatagataacttgatcatcaaaacacttcaacgccatcgca  10216800                                                --------->MYB52(1)    ------>ZmHOX2a(1)                          ----------->HVH21    <----------DOF2                          <---------At4g35610                                -----  ------>ZmHOX2a(2)                          --------->LBD16                               --------->YAB1 <------ZmHOX2a(2)                           --------->At4g35610                          --------->HSFC1(2) ---------ARR14(2)                       <---------ALFIN1                                 <---------ATHB12 -------->ARR14(2)                     <---------ALFIN1                                   --------->HSFB2a(1) ------>TEIL                      --------->ZAT14                             ---------->DOF2   <---- ----AtLEC2                       <---------ZAT14                  <----------DOF2 <----------ID1   tggatccttttaatgagtcgcatcccattagaagactgtagccactccgctaacagagcataatcaactctttcgctatcgaaagaagacgaatcatcct  10216900                                                                                     ------->MYC3                                                                                     <-------MYC3                                                                                     <-------MYC2                                                                                     ------->MYC2                                                                                    <---------ANAC46                                                                                    <---------ANAC55(2)                                                                                    --------->ANAC55(2)                                                                                    <---------ANAC58                                                                                    <---------TGA1a                                                                                    <---------bZIP60(2)                                                       --------->LBD16              --------->O2                                                      --------->HSFC1(1)            <---------O2                                                      <---------HSFB2a(2)           <---------ANAC58                                                      <---------HSFC1(1)            --------->TGA1a    <---------GLK1(2)                             <----------DOF2        <---------TOE2(2) <-----------GT1                                  ============================================bZIP_DOF ->ZmHOX2a(1)       --------->MYB46(3)    <---------GLK1(2)             <-----------RAV1(2) -----YAB1   <----------DOF2          ---------->DOF2 --------->HSFB2a(2)--------->LBD16          ---   gattcacattctctcctttgaaaccactaaaacccgaatcgaaagatgctctctttccagaaactaatcgaaacccaggtaatctcacgtgtctctgttc  10217000                                                                                       <--------P                                                                         <---------ARR14(2)    <-----                                                                         --------->ARR14(2)    <-----                                                               <---------ARR14(2)     <-------GAMYB -                                                               <---------GLK1(2)     <---------MYB46(3)                                                               --------->ARR14(2)  <---------LBD16---                                                             --------->LBD16   ----------->HVH21 ----                                               <---------TOE1(2)--------->GLK1(2)--------->ATERF1(1)<                                         <---------ARR14(2)<---------LBD16 <---------LBD16    <------                                    <---------DEAR3(1)    --------->MYB52(1)   --------->ARR14(2)----                               --------->ARR14(2)        <---------WRKY38(1) --------->LBD16  -------        --------->ARR11(3)     <---------ARR14(2)<------ZmHOX2a(1)      <---------GLK1(1)<------MYB46(1)    <---------MYB52(1) <---------ZAT6    --------->ARR14(2)--------->At4g35610 <---------ARR14(2)---- --->ZmHOX2a(1)        ----------->GT1<------NtERF2    <-----------HVH21--------->GLK1(1)<------MYB83   ctctcgcttagttcttgaatcgctactgtaacatatcgtcggagatttgtaggattgagtcaccggaatctctgaaatccggagacgcggttggattaac  10217100                                                            <------NtERF2                                                           --------->LBD16                                                           ----------->GT1                                                          --------->RAP2.3(2)                                                          --------->LBD16                                                          --------->RAP2.6(2)                                                         <---------LBD16                                                         <------NtERF2                                                        --------->LBD16                                                        ------>NtERF2                                                   ------>ZmHOX2a(2)                                                  --------->GLK1(1)                <------NtERF2                     <------ZmHOX2a(2)               <---------RAP2.3(1)                <---------GLK1(1) ----TOE2(3)  <---------DREB2C(2)                --------->ARR11(3) ----TOE1(3)  <---------DEAR4(1)                 <---------ARR11(3)                          -------- -------->MYB52(1)       ---------->DOF2         --------->ARR14(3)                      <---------AHL20(2) ------>DOF5.7(2)<---------DEAR3(1)              <---------ARR14(2)                     <---------AHL20(2) ----->TOE2(3)<---------DEAR3(1)                 --------->ARR14(2)            --------->ARR11(3) ---------DOF5.7(2)     <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->ANAC46        <---------ARR11(3) --- -----GT1     <---------At1g77200               --------->GLK1(1)           --------->DAG2   <------- ----->YAB1   <---------RAP2.3(3)               <---------GLK1(1)--------->AHL20(2) <----------DOF2 -->MYB52(1)<-----------HVH21       <---------HSFC1(2)--------->MYB46(3)   ---------->DOF2  --------- ----->TOE1(3)--------->ETT(1)      --------->HSFC1(2)<---------LBD16   --------->At4g35610 <--------   gataacgaaaacattgtcggcgatggagaaagagaagaagcttcacacagagatctcccgccggaaaaaaaatcagataaagttctcttttttatttatt  10217200                                           --------->bZIP60(1)                                           <---------ETT(2)                                           <----------ID1                                           <---------bZIP60(1)    <---------MYB46(3)                                        <---------YAB1            <---------DEAR3(2)                                      --------->YAB1              <------MYB83                                      -------->HAHB4             <---------DEAR3(1)                                      <---------ICU4            <---------ORA47(1)                                     --------->ICU4      <---------ARR11(3)  ---------->DOF2                    <---------ATHB51    --------->ARR11(3) ->AHL20(2)                      <---------MYB52(1)     --------->RVE1(1) ------>MYB59  *TSS    --------->GLK1(2)----------->TGA1--------->CCA1(1)                         <-- --AHL20(2)<---------AHL20(2)   ----------->GT1       --------->AHL20(2)                          --- ------>AGL15---------->DOF2<---------ARR14(2)        --------->YAB1           ------>ZmHOX2a(1)  --- -AHL20(2) --------->AHL20(2) ------>ZmHOX2a(2)----------->RAV1(1)<------MYB46(1)               <----   ttggtaaagagaattaaaagtttataatctgatctggtaattatgacgacaacaaataatatctcggtcggtttcaaattcctaagcgagagacaaatat  10217300                                           ------->MYC2                                           <-------MYC2                                           -------->ABF1                                           <-------MYC3                                           ------->MYC3                                           <-------MYC4                                           ------->MYC4                                          --------->ANAC55(2)                                          ===============================bZIP_DOF                                          <---------O2         --------->ANAC46                 <---------TGA1a         --------->ANAC58                 --------->O2         --------->ANAC58                 <---------ANAC55(2)       --------->ANAC46             ================bZIP_DOF     --------->ANAC46               ---------->DOF2                                          ------>ZmHOX2a(1)  <---------ZAT14                 --------->TOE2(3)                                          ========  --------->ZAT14                --------->ANAC46                                            --------  <---------ZAT18                ----------->GT1                                             ======== -------------AtSPL8            <---------TOE2(3)                            <-----------RAV1(1) ------------>AtSPL8         <---------ATHB12    *TSS              ------>ZmHOX2a(1)       ---------- ------------>AtSPL3     ------------>CBF --------->TGA1a     <----------DOF2======================== -------GT1             ------------------------>ANAC81    <---------ALFIN1  <---------MYB46(3)   acagtacacacacgacttaatatcaaaaccaataaacgtaaaacacgtgtctcatcacttcccactttcctctctgcatttgttgtctctctctcctgaa  10217400                              ------->MYC3                              <-------MYC3                             --------->ANAC55(2)                             --------->O2                             <---------TGA1a                             ===================bZIP_DOF                             <---------ANAC58                             ===============================================MYC_MYB                             <---------ANAC55(2)                             <---------O2                        ----------->HVH21                     ------>ZmHOX2a(2)                                    <---------LBD16                    <------ZmHOX2a(2)                                   --------->ARR14(2)                    <---------GLK1(1)                                  <---------MYB52(1)                   <---------ARR11(3)     <---------WOX13(1)        <-----------------AGL2      <---- ===========================HOX2a_HOX2a--------->WRKY12             ----------------->AG        ----- ->LBD16           --------->ARR11(3)<----------DOF2                <-----------------AGL1 --------->At4g35610 ==========================HOX2a_HOX2a --------->WRKY38(1)         -------->P          --------->ANAC58 ->RAV1(2)     --------->REM1(1) <---------CCA1(2)                 <---------At5g28300 --------->ANAC58 ==RAV    <-----------GT1    <---------ANAC58            <----------DOF2<---------ARR14(2)--------->MYB52(1)   aacccttgaattttgctacacgatctctgaaacgtgtctctttgactgacttcaatcttctttatcacttaccgtttctgggttttatgaagcaactgag  10217500                                                                                --------->GLK1(2)    ---------->DOF2                        --------->GLK1(2)           --------->HSFB2a(2)  <---------AHL20(2)          ----------->GT1  <---------YAB1          <---------HSFC1(1)  --------->YAB1             ----------->GT1  <----------DOF2      <---------ARR14(2)              <-  --------->AHL20(2)  --------->ANAC58     <---------ARR11(3)      --------->ARR14(2)   --------->MYB46(3) -----At4g35610       --------->ANAC58    <---------GLK1(2)    ----------------->AGL1  --------->DEAR3(2) ---->At4g35610      <---------LBD16 --------->MYB52(1) ---------->DOF2<---------HSFB2a(2)        <--   ctaataaaaagcttcttcttagactcggaagaagataaaaaacagaatctttattgtttaaagcttccaaattcgagaagagaatttgaaacgaccaagt  10217600         <---------MYB52(1)    --------->KAN4(2)   --------->KAN4(1)   <---------KAN4(1)   --------->GLK1(1)   <----------TaMYB80   <---------GLK1(1)  <---------ARR14(2)  --------->ARR14(2)  <---------ARR11(3)                                                                    --------->At5g28300  --------->ARR11(3)                             --------->DAG2                        ----------->GT1 <------ZmHOX2a(1)                 ------>ZmHOX2a(1)----------->GT1          <----------DOF2 --------TOE1(3)      --------------------->WRI1---------->DOF2             --------->TOE2(3) ------- ---------RAV1(2)     <----------DOF2     <----------DOF2           ---------->DOF2   ----------->GT1   tcaggatattcgtttcttcgtctactttggtctcttcctcttctctttcgaaaagggtttattctgtcttaaaagaaacctttttgagagggtaaaaaaa  10217700  Previous    Next  AGI:  At4g18520.1    Description:  binding. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G39530.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G53360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61773.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 10215131    to: 10217215    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g18530.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46884.1); contains InterPro domain Protein of unknown function DUF707 (InterPro:IPR007877) Range:  from: 10217349    to: 10220511    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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