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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC46
------->
GAMYB
--------->
MYB52(1)
----------------->
AGL1
<---------
ANAC58
--------->
YAB1
<-----------------
AGL3
<-----------
GT1
<-------
TEIL
---------->
ID1
------>
ZmHOX2a(1)
--------->
ANAC46
--
MYB46(3)
<----------
DOF2
<---------
GLK1(1)
<---------
ANAC58
------>
ZmHOX2a(1)
acattcataaccgaaacatggtaacgagacctgttcttctttggccttatttggattcctgcatttaacttgcttccaaacaattttc
ctgtatacaaaa
10203200
--------->
ALFIN1
----------->
GT1
--------->
ANAC58
------
<---------
ICU4
<---------
TOE2(3)
--------->
ANAC58
<-----
--------->
ATHB12
<---------
TOE1(3)
<---------
ANAC58
<-----
<---------
YAB1
--------->
ARR11(3)
<---------
ANAC46
<-----
--------->
ICU4
<---------
ARR11(3)
<---------
ANAC58
<------
ZmHOX2a(1)
<---------
At5g28300
----------->
GT1
----------->
RAV1(2)
<------
ZmHOX2a(1)
<-----------
GT1
----------->
GT1
----------->
ARR10
----------->
RAV1(2)
--------->
ALFIN1
attcaattcaccatgatttcgaattgagaaaaaacagtaagattttaaggtttggagagactggtttac
ctggcctgaagcaaatgggggaggaggaagg
10203300
<---------
ANAC46
<---------
ANAC58
<----
------>
NtERF2
------
<------
ZmHOX2a(1)
--------->
ANAC58
--------->
ZAT14
<---------
TOE2(3)
--------->
ANAC58
<---------
ZAT2
<-----
--->
HSFB2a(1)
--------->
ANAC46
<---------
At4g35610
----
HSFB2a(1)
--------->
CCA1(2)
--------->
At4g35610
<
-
MYB83
<------
ZmHOX2a(1)
<---------
ARR11(3)
<---------
ANAC58
<-----
-
MYB46(1)
<------
ZmHOX2a(1)
--------->
ARR11(3)
--------->
ICU4
<---------
ZAT14
ttttgaggaaggagaagagagtgaaggagaagcccagattgcagaagaagatgttccaagaagagacgccat
ttttgtgtgagcttagagtttactcagc
10203400
<----------
DOF2
<---------
ANAC58
<---------
ANAC58
<---------
WOX13(1)
--------->
MYB52(2)
--------->
ATHB12
<---------
ANAC58
*
TSS
<-
-----
GLK1(2)
<---------
AHL20(2)
<---------
YAB1
<------
ZmHOX2a(1)
<---------
CCA1(2)
--->
At4g35610
--------->
TOE1(3)
<---------
ANAC58
<------
ZmHOX2a(1)
------>
ZmHOX2a(1)
----
At4g35610
--------->
TOE2(3)
<---------
ANAC46
<-----------
RAV1(2)
------>
ZmHOX2a(1)
---------
YAB1
<-----------
GT1
<---------
MYB52(1)
<-----------
RAV1(1)
<---------
GLK1(1)
<-
----
ZAT2
<-----------
GT1
>>>>>>>>>>>>>>>>>
LFY
==================
RAV
--------->
GLK1(1)
-----
ttctgattggcttttttcaccttagaatttttttgtttccattggcttatgtttgtttctgtggtcaggataaggagata
gatttcctcctctatctcct
10203500
--------->
TOE2(2)
--------->
TOE1(2)
------>
MYB83
<---------
MYB59
<---------
AHL20(2)
--------->
AHL20(2)
----------->
TBP
--------->
SPL7
<---------
ZAT2
<---------
MYB46(2)
--------->
YAB1
<---------
SPL7
<---------
ANAC58
--------->
ANAC46
<-----------
TBP
--------->
AHL20(2)
<---------
ANAC58
<-----------
GT1
<---------
AHL20(2)
----------->
GT1
--------->
RAP2.6(2)
<---------
At4g35610
------>
MYB46(1)
<---------
AHL20(2)
>>>>>>>>>>
GT-1
--------------->
AtSPL8
--------->
AHL20(2)
---------
DOF2
--------->
ARR11(3)
--------------->
AtSPL3
----------->
TBP
--------
DAG2
--------->
YAB1
<---------
AHL20(2)
--------->
DAG2
<---------
AHL20(2)
----
->
ZmHOX2a(1)
--------->
WOX13(1)
--------->
AHL20(1)
---------->
DOF2
----------->
TBP
--------->
YAB1
ccttttttttatttataaatcaaaaatgatatagaaaataaaatagccgtaccaaaaaaaaaggcgagcttctatatatatataccaaacataagaatat
10203600
<-----------
GT1
<------
NtERF2
<---------
RAP2.3(1)
<---------
At1g77200
<---------
DEAR3(1)
<---------
MYB52(1)
<---------
ARR11(3)
--------->
ATERF1(1)
<------
NtERF2
--------->
At4g35610
<-----------
HVH21
<---------
ANAC46
--
<---------
ZAT2
<---------
ANAC58
<---------
bZIP60(1)
<---------
At4g35610
<---------
GLK1(1)
--------->
bZIP60(1)
*
TSS
--------->
ATHB12
<-----------
ARR10
<---------
ANAC58
<------
NtERF2
--
--------->
ANAC58
--------->
ZAT2
<---------
ALFIN1
------>
NtERF2
--------->
ALFIN1
<---
--------->
ANAC58
------>
NtERF2
--------->
ARR11(3)
<---------
ANAC46
--------->
LBD16
<----
------>
DOF2
<---------
ATHB12
<---------
GLK1(2)
--------->
ARR14(2)
<---------
LBD16
<----------
aaaggccc
aagtcaaatcattcggagcccagctaatttcaaaatctccccccttcgagttccgtcggcgattttctctccggtgtcgtcgtcttgttgcc
10203700
--------->
DOF5.7(2)
--------->
TOE1(3)
<---------
TOE2(3)
------->
TEIL
<---------
DOF5.7(2)
<--
------->
WRKY12
<----------
------->
WRKY38(1)
<---------
ANAC58
--------->
GLK1(2)
----
GAMYB
--------->
TOE2(3)
<---------
At5g28300
----------->
ARR10
-----
ANAC46
<---------
MYB52(1)
---------->
DOF2
<-----------
GT1
<---------
ANAC46
<
-
RAV1(1)
<---------
TOE1(3)
------->
GAMYB
----------->
GT1
<---------
ANAC58
<---------
GLK1(2)
gttgaacgtttatcgttagcgcctactacatatacaactgcaaagcgattcaatcg
gtaagaatttaccctcgttgctcgtcgattgagtagaatctcac
10203800
--------->
YAB1
--
<---------
MYB46(3)
<----
------>
ZmHOX2a(2)
<----
<---------
TOE2(3)
<---------
ANAC58
<-------
TEIL
<------
ZmHOX2a(2)
<---------
ANAC46
>>>>>>>
GRF7
<---------
TOE2(3)
--------->
ARR14(2)
<---------
ANAC58
---------
HVH21
<---------
TOE1(3)
<---------
ARR14(2)
------->
TEIL
----------->
TGA1
-
ARR10
<---------
At4g35610
--------->
ATHB12
<---------
YAB1
----------->
HVH21
-----------
RAV1(2)
<---------
MYB52(1)
<---------
WOX13(1)
<---------
YAB1
<-----------
HVH21
<----
tgtcaggcgttgttttagcttcggtttgctaaggttcgacgattgacgatcggttgatcataatcgatgaacatttctgtgttagaggtgacgtttatgc
10203900
<--
---
--------->
ANAC58
--------->
WRKY12
<---
--------->
ANAC58
<---------
At4g35610
<----
--------->
CCA1(2)
<----------
DOF2
<---------
ANAC58
<----
<---------
ARR14(2)
------->
TEIL
<---------
ANAC58
<----
--------->
ARR10
===============================
HOX2a_HOX2a
--------->
WRKY38(1)
-----
-----
ANAC58
<------
ZmHOX2a(2)
<---------
DAG2
<---------
ANAC46
--------->
LBD16
<----
-----
ANAC58
<---------------------
WRI1
------>
ZmHOX2a(1)
<---------
At4g35610
<----
-----
ANAC46
<---------
HSFB2a(1)
<-------
TEIL
--------->
TOE2(3)
<-------
GAMYB
--------
gtagatttgagtaagaaatgttcgatcaatgctaagatgcactttctcctaaacttagtttcgtgctgctcgttgtccctgaaatttagtctcgagtggc
10204000
<---------
ANAC58
<---------
ANAC58
<---------
ANAC46
----------->
GT1
----
NtERF2
----------->
RAV1(2)
------>
ATERF1(1)
--------->
DEAR3(1)
------
ATERF1(1)
------->
GAMYB
-----
bZIP60(1)
--------->
MYB46(3)
-----
ANAC58
--------->
DEAR3(2)
<---------
ICU4
<---
-----
bZIP60(2)
------->
TEIL
<------
MYB83
<---------
YAB1
<---
---->
bZIP60(1)
--------->
ARR14(2)
<------
MYB46(1)
--------->
ATHB51
<-----
-----
ANAC58
<---------
ARR14(2)
<---------
AHL20(2)
--------->
ICU4
<<<<<<<<
-----
ANAC46
--------->
MYB52(1)
<---------
YAB1
--------->
YAB1
<<<<<<<<<
TBF1
<---
->
ALFIN1
<---------
MYB52(2)
--------->
YAB1
------->
TEIL
------>
ZmHOX2a(1)
<--------
gtctccttgcttaaaatcgacgaaccgcctggttattttttataatttggtgttgaatctcataatttgattcctgctactgttcttcttcgtttagatt
10204100
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AGI:
At4g18480.1
Description:
CHLI1 (CHLORINA 42); magnesium chelatase. Identical to Magnesium-chelatase subunit chlI, chloroplast precursor (CHLI) [Arabidopsis Thaliana] (GB:P16127); similar to CHLI2, magnesium chelatase [Arabidopsis thaliana] (TAIR:AT5G45930.1); similar to unknown [Populus trichocarpa] (GB:ABK95697.1); contains InterPro domain Magnesium chelatase ATPase subunit I; (InterPro:IPR011775); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain Magnesium chelatase, ChlI subunit; (InterPro:IPR000523)
Range:
from: 10201683
to: 10203480
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At4g18490.1
Description:
Identical to Uncharacterized protein At4g18490 [Arabidopsis Thaliana] (GB:P16128;GB:Q9SB82); similar to hypothetical protein [Vitis vinifera] (GB:CAN81126.1)
Range:
from: 10203609
to: 10208208
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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