Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       ---------->DOF2            <------ZmHOX2a(1)                                   ------>ZmHOX2a(1)            ----------->GT1                                 --------->GLK1(2)        ---------->DOF2                                     --------->ARR14(2) ------->DOF2                                               <---------ARR14(2) ---->YAB1 ----------->GT1                                 <---------GLK1(2) ---->AHL20(2)                    ------>ZmHOX2a(1)     --------->HSFB2a(2)     <---------GLK1(2)   aaaagacagagaaaggataaaaacacattttgagtccttgttgtgaatagtttcacttacagaatcctagagaaagcgtttcgattctcttgaagagtcc  10148300                 <-------TEIL              --------->At4g35610     --------------------->WRI1            <-----------RAV1(2)       <----------DOF2                                           <----          ----------->RAV1(1)     <---------------AGL15                                        ------        --------->At4g35610      <-----------------AG        ------>ZmHOX2a(2)    --------->MYB52(2)        <---------At4g35610--------->YAB1                   <------ZmHOX2a(2)     <---------MYB46(3)   ------>ZmHOX2a(2)      <---------ATHB12                 --------->ARR11(3)   <---------MYB52(1) <---------ARR11(3)       --------->ICU4             <----------DOF2<----------TaMYB80  <-----------GT1 --------->ARR11(3)       <---------YAB1 ----------->GT1   <---------ARR11(3) <---------ANAC55(2)<---   attgatcttcagcaccagatgcatagtaatcataaaccatctttggtaatttctcctttgcgatcttctcatattccatcacgtttgttatctccatttt  10148400          --------->ANAC58          --------->ANAC46        --------->ZAT6       --------->ZAT14                                        <---------DAG2   --------->ANAC46                                        <-----------GT1 <-----------GT1         <-----------HVH21           --------->YAB1 -----YAB1--------->ANAC58----------->HVH21       --------->YAB1                                  <-- --->AHL20(2)           ------>ZmHOX2a(1)         <---------ICU4                             -------- ------AHL20(2) --------->AHL20(2)             --------->YAB1 <----------DOF2        --------->YAB1   tatttactcaacactcaaaaaaattcctgtgacagataaatacacattttcatcatcaaaatcactttttaaaacccttgaattcaagaatgaagaatca  10148500                                                                 <---------GLK1(2)                                                               ----------->ARR10                                                           <---------ZAT2                                                           --------->ZAT2                                                          --------->LBD16                                                          <---------ATERF1(1)                                                 <---------ARR11(3)              <---------ARR11(3)                                                 <---------ARR14(2)              <---------ARR14(2)                                                 <-----------ARR10               --------->ARR14(2)                                                 --------->GLK1(2)--------->GLK1(2)        --------->ANAC58                         --------->ARR11(3)             <------ZmHOX2a(1)        --------->ANAC46            --------->At4g35610   ------>NtERF2       <---------TOE1(2)        --------->ANAC58  --------->DAG2      --------->AHL20(2) <---------ARR14(2) <-----------HVH21      --------->MYB52(1) ---------->DOF2      <---------AHL20(2) --------->ARR14(2)------>ZmHOX2a(2) ----ZmHOX2a(1)  --------->ZAT6     <---------At4g35610 <---------LBD16  XXXXXXXXXXXXXXXXXXXXX>MIR2935 ->GLK1(2)    ----------->HVH21--------->WOX13(1)--------->ARR14(2)     --------->YAB1   ggaacaaaaaacgacactgacactaaaaaaagtcaattagcagactaataaaatctgccccggctcagattctataatcacaggatcgtcactcgttgag  10148600                         --------->At4g35610                       --------->YAB1          --------->DAG2                    --------->WOX13(1)        ---------->DOF2                                       <                   --------->MYB46(3) --------->DEAR3(1)   <---------At4g35610                   <---             <---------ARR11(3)  --------->ANAC46         <---------ARR11(3)                    <----             --------->GLK1(2)   --------->ANAC58         --------->ARR11(3)                   <-----             --------->ARR11(3)  --------->ANAC58  --------->MYB52(1)                        *TSS----   tttgatattgatgaaaatctaacaatcagataaacaagcatcgacgagaaaagtaacagagagcttcttacctagaggcctagagagacttggtcttctc  10148700       <---------ANAC46      <------NtERF2    --------->ALFIN1    <---------DEAR3(1)                                     --------->AHL20(2)  <------MYB46(1)                                          <---------AHL20(2)  <------MYB83                                             --------->AHL20(1)                     --- <---------AtMYB61                                         <---------AHL20(1)                     --- --------P                                                --------->YAB1                          <-- ------HSFB2a(2)                                    <---------ZAT6                               <--- -----LBD16    --------->YAB1                     <---------ZAT14                              ------ ----LBD16  --------->YAB1                    <---------------AtSPL8                           ------ ----->HSFB2a(2)         <----------ID1      ------>ZmHOX2a(2)           --------->YAB1---------->DOF2   gggaaggtggcgaagaataagaatataagaacaaaacaaaatgttgatcgagtactcttaatataatatagacactcataactaagtcacaaagaaacat  10148800                                                 <---------O2                                                 <---------ANAC55(2)                                                 ----------->GT1                                                 --------->TGA1a                                                 <---------TGA1a                                                 <---------ANAC46                                                <-----------------------TaNAC69(2)                                              <------ZmHOX2a(2)                                       ----------->HVH21                                      <-------MYC3                                      ------->MYC3<-------MYC3                                     --------->bZIP60(1)                                     <---------bZIP60(1)                                     --------->bZIP60(2)                                     ======================bZIP_bZIP                                     <---------ANAC46                                     --------->O2==========================================bZIP_DOF                               <---------WOX13(1)--------->ANAC55(2)                   <--------ATHB1    <---------O2--------->O2                   -------->HAHB4    <---------TGA1a      ----------->HVH21<-----------HVH21  <---------WOX13(1)        --------->ANAC46 ------>ANAC55(2)  --------->ATHB51  --------->ANAC55(2)     --------->At4g35610 ------>ANAC46     <---------ICU4<-----------HVH21------->MYC3    --------->At4g35610 -------ANAC55(2) <---------AHL20(2) <---------ANAC55(2)     --------->ZAT2 ----TEIL         --------->AHL20(2) --------->TGA1a        --------->ANAC58                 -------- --->TOE2(2)      <---------ATHB51 <-------------DYT1       --------->ANAC58    <----------DOF2 --->TOE1(2)----------->GT1  --------->ATHB12<-----------HVH21    <---------At4g35610   <---------MYB46(3)   acgtctctgtgactgtgtaaataattgtcagtgattgtcacgtgatggatcacgtgaaacacaagctcaccagacaccagggcttttcatttgttacaac  10148900                                                                                   ---------->DOF2                                                                                 <---------YAB1                                                                           --------->ATHB12         -  <-------TEIL                                                            <---------YAB1         <--- --------->AtLEC2                                                      <---------AHL20(2)        <--- ->REM1(1)          <---------ICU4         <---------GLK1(2)          --------->AHL20(2)         ----   aacatgcatagtttaagacccattattctcaaataagatggaccagattagtcatttgtgatttggctccaattttatgatttataaaagagttgggagt  10149000                                                             --------->ZAT14                                                             <---------ZAT14                                                      <---------MYB46(3)                                                      --------->MYB46(2)                                                      --------->MYB111(1)         <---------MYB46(3)                           --------->MYB111(2)         ----------->GT1                             <--------P    --------->ARR11(3)                              <---------MYB52(1)    --------->AHL20(1)                             ------------>MYB.PH3(2)    <---------AHL20(1)                           <-----------RAV1(2)    <---------ARR11(3)                          <------ZmHOX2a(2) -------->ANAC46         <------MYB83          --------->ARR14(2) ------ZAT18             <------MYB46(1)       <---------ARR14(2)              ------------>CBF     < ------ZAT14            <---------MYB46(3) <---------At4g35610    --------->At4g35610      <---------MYB46(3) ----->ZAT18       <---------YAB1------->TEIL <------ZmHOX2a(1)   <---------At4g35610   <----------DOF2   ccacaaaatattggttatattgtgagtgggtaatggatgttgttcagaggatcaggtagttagtactctgctgttttaaaatccaatagactttggttaa  10149100                                    ---------->DOF2                             --------->SPL7                         <---------TOE1(3)                       <-----------GT1                                                        <------                  <-----------------AGL3                      <---------DAG2             <---------ANAC58      <---------AHL20(2) <---------TOE2(3)       <---------AHL20(2)                      <---------ANAC58      --------->AHL20(2)<---------At5g28300      --------->AHL20(2)                      <---------ANAC46  ----------->GT1 ----------------->AGL2   <---------MYB59  ------>NtERF2     ----------->GT1 ------- ------------CBF  ----------------->AGL3*TSS    --------->AHL20(2) <-----------GT1 <---------AHL20(2)   caaattgtttaaatcacaaaaccatttacggttcgaccgaaagaaccgaattttattctctctgccttatcacctctgagtggaaaaaattgagtgagcg  10149200  Previous    Next  AGI:  At4g18360.1    Description:  (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative. similar to (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G14420.1); similar to (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G14420.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO40335.1); contains InterPro domain FMN-dependent alpha-hydroxy acid dehydrogenase, active Range:  from: 10145930    to: 10148693    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g18370.1    Description:  DEG5/DEGP5/HHOA (DEGP PROTEASE 5); serine-type peptidase/ trypsin. Identical to Protease Do-like 5, chloroplast precursor (DEGP5) [Arabidopsis Thaliana] (GB:Q9SEL7;GB:O49507;GB:Q93ZW5); similar to DEGP1 (DEGP PROTEASE 1), serine-type peptidase [Arabidopsis thaliana] (TAIR:AT3G27925.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40338.1); contains InterPro domain Peptidase S1 and S6, chymotrypsin/Hap; (InterPro:IPR001254); contains InterPro domain Peptidase S1C, HrtA/DegP2/Q/S; (InterPro:IPR001940); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) Range:  from: 10149140    to: 10151229    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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