Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->AHL20(2)                     <---------YAB1                    --------->TOE2(3)                   <--------HAHB4                   -------->ATHB1                   <---------ICU4                           ------->TEIL                   --------->ATHB12                        <---------CCA1(2)                   --------->YAB1                    <---------RVE1(1)                  <---------ATHB12                   <---------CCA1(1)                 ------->TEIL                       --------->ARR11(3)             <---------TOE2(3)                      <---------ARR11(3)           <---------AHL20(2)                       --------->AHL20(1)   <----------DOF2     <-------           --------->AHL20(2)                       <---------AHL20(1)   <---------------AGL15     <-        --------->WOX13(1)--------->AHL20(1)       --------->YAB1        --------->TOE2(3)  --------- -AHL20(2)<---------ATHB12<---------AHL20(1)    ---------->DOF2<----------DOF2     <---------REM1(1)   acccttatatcaattaatgaatcattaatatatatgatatatccattacccaaagatatttgtatctttcgcttactttaaaatgttgaagctataaaat  10142300                                                                              --------->AHL20(2)                                                                        --------->ANAC58                                                                        --------->ANAC58 --------->ANAC55(2)                                                 ------->GAMYB --AHL20(2)                                                         --------->ANAC58             ---- ----------GT1       <---------YAB1                                 --------->ANAC46     ---------->DOF2 >AHL20(2)      ----------->GT1           <-------TEIL              --------->ANAC58 <----------ID1 -   tttacatatttgaaaaatgagttattagtatttcatcaacaaaatgcattctactgtatattggattccaacgcaaacaataacatagctacaaagctat  10142400                                                                              ------>NtERF2                                                                 <-----------GT1                    <                     <-----------GT1         <---------------AtSPL3           --------->LBD16       -          <--------HAHB4                     <---------------AtSPL8          --------->RAP2.6(2)    -          --------->YAB1                     --------------->AtSPL8       <-----------RAV1(1)       <          --------->ATHB12             --------->AHL20(1)    <---------AHL20(1)                    <-         <---------YAB1--------->ZAT6  <---------AHL20(1)    <---------ARR11(3)                    -- ----->YAB1--------->TOE2(3)           --------->ARR11(3)    --------->ARR11(3)                  ---- --------->DOF2  <---------AHL20(2)    <---------ARR11(3)    --------->AHL20(1)             ---------   cacaaagcactatcattagtttattacactaaaatttcgaatattttcatgtacgacttcaaatatttttcattttctgccgcattctcatgtcattagt  10142500                        ------>MYB83                        ------>MYB46(1)                      <---------MYB59                      --------->MYB46(3) ---------ICU4       --------->ANAC46 -------->ATHB12     --------->ANAC58              <----------DOF2            <----------DOF2 -------->YAB1       --------->ANAC58        ------>ZmHOX2a(1)              ------>ZmHOX2a(1) --------HAHB4      ------->TEIL         <-----------GT1               <----------DOF2 --------YAB1       --------->SPL7    --------->GLK1(1)               --------->HSFC1(2) ------->ICU4     <---------SPL7      <---------GLK1(1)               --------->HSFB2a(1)          <- ----->YAB1      <---------ANAC58    --------->ARR11(3)               <---------HSFB2a(1)      ------ >ICU4           <---------ANAC58    <---------ARR11(3)               <---------HSFC1(2)  <---------At4g35610   catcattactccctctctcgcgtacccaactctatataagatttctccttcttctttttctcttctcatcgaactttcctctttcttctctcatctcctc  10142600                      <-------TEIL                     --------->CCA1(2)           --------->ANAC46      <---------ATHB12        <---------REM1(2)      --------->WOX13(1)                          --------->ANAC58        --------->ZAT14      ------------>CBF                              --------->ANAC58 ---------DOF2      <---------ARR14(2)      --------->ANAC58   --------->CCA1(2) >ZmHOX2a(1)        --------->ARR14(2)      --------->ANAC58 *TSS        ---------->DOF2   tctttcactcttcacaccagaagatacaaaaaacaatcactgtctcaagcctctctataccgaagataagaaaacaaaagccatggtttctcttcttaca  10142700                                                                                                    <                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                               <-----                  --------->AHL20(2)                                                           ------                  <---------AHL20(2)                                                       <---------DEAR3(1)           <---------AtMYB61                                                        <---------AHL20(2)         <---------MYB46(3)                                                        --------->AHL20(2)        <---------AtMYB61                                                    ----------->GT1  -------        --------->ALFIN1        --------->ANAC58                         ------->GAMYB     --------->ANAC46     --------->ATHB12           --------->ANAC58                      --------->MYB52(1)  ------->TEIL  <---------At4g35610        <------NtERF2--------->ATHB12      ---------->DOF2    <---------AHL20(2)   atgccgatgagtggtggtattaaaacatggcctcaagcccaaattgatttgggttttaggcccattaaaagacaaccgaaggttattaaatgcacggtgc  10142800                                                                --------->At4g35610                                                                <---------At4g35610                                                                ------>NtERF2                                                               --------->RRTF1(2)                                                               --------->DEAR3(1)                                                               ----------->RAV1(1)                                                               --------->RAP2.3(2)         --------->ANAC58                                    <---------ATERF1(1)         --------->ANAC58                                    --------->LBD16         <------------MYB.PH3(1)                 --------->AtMYB61         --------->ANAC55(2)                  <---------ARR14(2)<------NtERF2         <---------ANAC55(2)             --------->ANAC46    --------->At4g35610       --------->MYB52(1)        -------->ATHB1  <---------ALFIN1      ----------->HVH21          <---------AHL20(2)          ------>NtERF2    --------->ANAC58             <--------HAHB4 --------->MYB46(3)    --------->ANAC58             --------->ATHB51--------->DEAR3(1)--------->At4g35610             --    --------->ANAC46             --------->AHL20(2)         --------->DEAR3(1)                    --- ------ZmHOX2a(2)               <---------ATHB51<---------ABI4(2)<------NtERF2                 ------ ----------ARR10                <---------ATHB12<---------MYB55(2)----------->RAV1(1)    --------->ARR11(3) --------ARR14(2)         --------->ANAC58 --------->ANAC46 --------->ANAC46             <---------ARR11(3) ------->ARR14(2)         --------->ANAC58 --------->HSFB2a(2)--------->RRTF1(1) ------>NtERF2 <----- ----ZAT14            ---------->DOF2<-----------GT1       <---------LBD16  ------>ZmHOX2a(1)  ------ --->ZAT14      <-----------GT1 --------->ICU4--------->ARR14(2)--------->LBD16<---------LBD16 <----- -->ALFIN1------->GAMYB   --------->ANAC46 <---------HSFB2a(2)--------->RAP2.3(1)--------->LBD16-----   agatcgacgtaacggaattaaccaaaaaacgccaattatttacacccagaaccaccgctactccgccgcagcataatcctctccggctaaacatcttcca  10142900          <-------GAMYB         <---------MYB46(3)       <------NtERF2       --------->ATERF1(1)      <---------ORA47(2)      <---------DEAR4(2)      ------>NtERF2      <---------ATERF1(1)      <---------ERF1      <---------RAP2.3(1)     <---------ANAC46     --------->ATERF1(2)                                                              <-------MYC2     <---------RAP2.3(3)                                                              <-------MYC3     <---------RAP2.3(2)                                                              ------->MYC2     <---------DEAR3(1)                                                               ------->MYC3     <---------ATERF1(2)                                                              <-------PIF5     --------->DEAR3(1)                                                               <-------MYC4    <---------ABI4(1)                                                                 ------->MYC4    <------NtERF2         <----------CDC5                                            <---------TGA1a    --------->ATERF1(1)  <---------At4g35610                                         <---------O2    --------->RAP2.3(1)  --------->At4g35610                                         --------->O2   <---------DEAR4(2)    <------NtERF2                                               --------->ANAC55(2)   <---------RAP2.3(1)   --------->ZAT2                                              --------->TGA1a-   <---------ATERF1(1)   <---------ZAT2                                 <---------ARR14(2)          -  <---------DEAR3(1)   <---------DEAR3(1)                     <---------ALFIN1     <---------ALFIN1<-  <---------RAP2.3(2)  <---------RAP2.6(2)               --------->GLK1(2)        ------>ZmHOX2a(2)-- ------->DAG2         ------>NtERF2                     <---------GLK1(2)       --------->ARR14(2) -- ------->DOF2        --------->ANAC46                   <---------ARR11(3)      <---------ARR14(2) <- --->HSFC1(1)        <---------O2 --------->ZAT18       <---------ARR14(2)  <---------At4g35610   <-- ----HSFC1(1)     ----------->HVH21                     --------->ARR14(2)  --------->At4g35610<----- --->HSFB2a(2)   <------ZmHOX2a(2)<-------TEIL        ----------->ARR10 --------->ARR14(2)  <-------- ----HSFB2a(2)<---------ANAC58 <---------ANAC58   --------->ANAC58     ========================bZIP_DOF ---->LBD16   <---------ANAC58 <---------ANAC58   --------->ANAC58     ---------->DOF2------->PIF5<--   gaaagcggcggcgattgcgatcgacgcggctgagcgtgcattaatctcacacgagcaagattctccacttcccaaaaccgctgatccacgtgttcagatt  10143000                        --------->HSFC1(2)                        --------->HSFB2a(1)                        <---------HSFC1(2)                        <---------HSFB2a(1)                       <---------ARR14(2)            <---------LBD16                                                                         <            --------->LBD16     --------->SPL7                                                     --           <---------LBD16     <---------SPL1(1)                                                  <--      -------->ATHB1   --------->ARR14(2)                                                    --------     --------->ICU4    --------->GLK1(2)                                  ----------->HVH21  -------- <------NtERF2        <---------GLK1(2)                               <---------ZAT14        <------- ----->NtERF2     <---------LBD16<---------DEAR3(1)       --------->MYB46(3)                --------- -------->LBD16  --------->MYB52(1)       --------->AtMYB61--------->KAN4(2)               <--------- --------ANAC46  --------->SPL7<---------MYB52(1)         <---------KAN4(1)                --------->LBD16 ------->LBD16  <---------ARR14(2)     <---------ARR14(2) <---------HSFB2a(1)             --------->ANAC46 ------->ETT(1) --------->ARR14(2)--------->LBD16         --------->KAN4(1)               --------->ANAC55(2) --------LBD16 <---------SPL7 <---------SPL7              --------->HSFB2a(1)<---------DEAR3(1) ----- -------LBD16--------->LBD16  <-----------HVH21      <---------TOE1(2)--------->ZAT14  <---------ARR14(2) ----WOX13(1)--------->ANAC46<---------ANAC58   <-----------HVH21  --------->RAP2.6(3) --------->ARR14(2) -YAB1<---------ICU4--------->LBD16    --------->ARR14(2)<---------KAN4(2)--------->WRKY12<---------ANAC55(2) -------ANAC46--------->LBD16<---------ANAC58  --------->DEAR3(1)----------->HVH21    <---------CCA1(2)   gccgggaattattccccggtaccggaatcttccgtccggcgaaacctcaccgtcgaaggaacaatccctgactgcattgacggtgtttatatccgtaacg  10143100                                    <---------AHL20(2)                                   --------->AHL20(2)                               <------NtERF2   --------->ARR14(2)         ----------->RAV1(1)                                     <---------At4g35610   <---------ARR14(2)       <---------ZAT18                                 ------->GAMYB --------->STY1(2)   --------->GLK1(2)   --------->At4g35610                                 <---------MYB52(2) ------NtERF2          ----------->RAV1(2)                                 --------->MYB46(3) ------- ---->NtERF2           --------->ZAT2                           ----------->GT1    <-------TEIL -------ANAC46         ===================RAV                --------->ANAC58 ------>MYB83<---------ZAT2 ->ARR14(2)            <---------At4g35610       --------->ANAC58        <-----------GT1  <---------STY1(2) ->MYB52(1)            <---------ZAT2            <---------ANAC55(2)  --------->YAB1  --------->ZAT2 --ARR14(2)          --------->MYB46(3)          --------->ANAC58--------->At5g28300  <---------ZAT2 -->HVH21          ================RAV           --------->ANAC55(2)--------->AHL20(2)--------->At4g35610 --HVH21           ----------->RAV1(1)    <---------LBD16    --------->ANAC46 ------>MYB46(1) ------- -->GAMYB          --------->MYB52(1)   ----------->HVH21    --------->ANAC58--------->MYB52(1)   gcgcgaatccgatgtttgagccaacagctgggcaccatttattcgacggagacggaatggttcacgcagttaaaataaccaacggttcagctagctacgc  10143200  Previous    Next  AGI:  At4g18350.1    Description:  NCED2 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2). Identical to 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplast precursor (NCED2) [Arabidopsis Thaliana] (GB:O49505); similar to NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) [Arabidopsis thaliana] (TAIR:AT1G30100.1); similar to NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE3) [Arabidopsis thaliana] (TAIR:AT3G14440.1); similar to NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9) [Arabidopsis thaliana] (TAIR:AT1G78390.1); similar to 9-cis-epoxy-carotenoid dioxygenase 2 [Solanum tuberosum] (GB:AAT75152.1); similar to neoxanthin cleavage enzyme [Vigna unguiculata] (GB:BAB11932.1); similar to 9-cis-ep Range:  from: 10142661    to: 10144456    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version