Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <---------YAB1                                                        --------->AHL20(2)                                                        -------->ATHB1                                                        <--------HAHB4                                                        <---------ICU4                   <----------DOF2                      --------->YAB1                   <---------DAG2                       --------->ATHB51              <----------DOF2                           <---------AHL20(2)         ----------->HVH21                             <---------ATHB12       <---------ANAC58     --------->GLK1(2)          --------->ICU4       <---------ANAC58     ------->TEIL               <---------ATHB51            --------->GLK1(2)       --------->ANAC55(2)  <---------ARR11(1) --------->ARR11(3)           <---------AHL20(2)       <---------ANAC55(2) <---------CCA1(2)   <---------ARR11(3)          --------->AHL20(2)     <---------ANAC46   --------->HSFC1(1)    --------->CCA1(1)            <---------AHL20(2)     <---------ANAC58   --------->HSFB2a(2)   --------->RVE1(1)      <----------DOF2          -------     <---------ANAC58   <---------HSFB2a(2) --------->AHL20(2)  <-----------GT1   <---------GLK1(2)   tttagtagcgcgtgacctttacttttctcgaatctaaaatttcaaaaaaaatctccaattattttttaagccttttttttaatagaatctcagacaacaa  10049800                                                                                           --------->YAB1                                                                                           --------->AHL20(2)                                                                                 <---------AHL20(2)                                                                              --------->AHL20(1)                                                                     --------->At4g35610  -----------                                                                     ----------->GT1      <----------                               --------->YAB1                    <---------ARR14(2)       ===========                               <---------ICU4                    --------->ARR11(3)   --------->AHL20(2)                              <---------YAB1                     --------->GLK1(2)---------->DOF2                         <---------At4g35610                     --------->ARR14(2) ----------->GT1                        <---------TOE2(3)                        <---------ARR11(3)--------->DAG2  --                        <---------TOE1(3)                  <---------WOX13(1) <---------AHL20(1) ----              ----------->GT1 --------->ICU4            <---------YAB1       --------->AHL20(2) ----- -->MYB46(3)  <---------ANAC55(2)<---------YAB1         --------->ICU4     --------->AHL20(2)  ------   ctgttttaaacaaaatatgtaaaattaagcttattattatccaaaacctattcatgtcttaattgaaaatctgctaaaaatatataaagttaataaaaaa  10049900                      <---------ICU4                     <---------YAB1                     --------->ICU4                   -------->HAHB4                  --------->ICU4                <---------ICU4                --------->YAB1               --------->ICU4               <---------ATHB51               <---------ATHB12                                                       --------->LBD16             ------>MYB46(1)                                                         <---------HSFB2a(2)         -------->P--------->YAB1                                                    --------->HSFB2a(2)      <---------At4g35610                                                           <xxxxxxxxxxxxxxxx      --------->At4g35610                                                           <---------LBD16 ---->AGL15<---------MYB59                                                         <-----------GT1 -----AGL15<---------------AGL15                                               <---------DAG2 ===========================MADS_MADS                 <----------DOF2          <----------DOF2 ------->AHL20(2) <---------YAB1                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       ------ ------->GT1 ------>MYB83                        <---------MYB59          <----------DOF2      ------ ---->DAG2 --------------->AGL15                --------->ANAC55(2)      <---------ANAC58     <------ ---->DOF2----------------->AGL3            <----------DOF2              <---------ANAC58     -------   agtaattaagctaccaaataatgataattaacacatataccattttctttacataactttccaaaaatttgaatttctttcctttttcccgaactcatta  10050000                                 ---------->DOF2                              --------->AHL20(2)                          --------->AHL20(2)                         <---------AHL20(2)                                                       --- xxxxxxxsmallRNA(si3)    --------->AHL20(2)                                          ---------->DOF2 --->AHL20(2)        --------->AHL20(2)                                            --------->ANAC58 --->ATHB51          <---------AHL20(2)                                   ------------>CBF   <-------TEIL ---YAB1             --------->AHL20(1)      <-----------GT1    --------->ARR14(2) --------->ANAC58 -->ICU4     ---------->DOF2 --------->AHL20(2)    <----------DOF2  <---------HSFB2a(2)     ---------   tttagtcccaaattcaaaagaaataaaataaataaaaaagaggtttttttcttctttttcttccgatatactcgaagtcaatagaacgaaagagatacaa  10050100                                                                                                   <-                                          --------->GLK1(2)                                   <------      --------->ARR11(3)                 <---------GLK1(2)                                   --------      <---------ARR11(3)             ---------->DOF2                                        ---------      --------->GLK1(2)           <-----------HVH21                               <-----------RAV1(1)     <---------GLK1(2)         <---------ANAC58  ------->TEIL           --------->ARR14(2)  <-------- ------>YAB1                   <---------ANAC58 <---------CCA1(2)       <---------ARR14(2) <---------LBD16 >CCA1(2)<----------DOF2   <------------CBF ----------->GT1        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   acatcaagaatctttattttgggttttagaattgctcgtcaaagaatcgtgaatctaagaagtttttgaattcaaatctgatttgtgttgttttccggta  10050200                                   <---------DEAR3(1)                                  --------->At4g35610                                  <---------At4g35610                                  <------NtERF2                                  --------->ATERF1(1)                                 <---------ATERF1(1)                                 ------>NtERF2                                 <---------RAP2.3(1)                                 <---------ERF1                                <---------RAP2.3(3)                                <---------RAP2.3(2)                                --------->ATERF1(2)                                <---------ANAC46                                <---------RAP2.6(2)                                <---------DEAR3(1)                               --------->ATERF1(1)                               --------->RAP2.6(3)                               <------NtERF2                             --------->ALFIN1                             <---------DEAR3(1)                            --------->ATERF1(1)                          --------->ALFIN1                          <---------AtMYB61                          <---------DEAR3(1)                        <------MYB83 <------NtERF2                        <---------MYB46(3)                                --------->HSFB2a(2)                        <------MYB46(1)                                   <---------HSFB2a(2)                       --------->ALFIN1                              <------NtERF2         --------->ARR14(2)                       <---------AtMYB61<---------MYB52(1)          ------>NtERF2          <---------ARR14(2) --------->LBD16       <---------DEAR3(1) --------->MYB52(2)       <---------ANAC46       <------ZmHOX2a(1) --------LBD16      <---------MYB46(3) --------->TOE2(3)         ------>NtERF2  <------MYB83 ---MYB52(1)    <---------ATHB51<---------ATERF1(2)              --------->LBD16----------->GT1 ->LBD16        --------->ICU4<---------ERF1                    <---------RAP2.6(2)    <---------LBD16 >HSFB2a(2)  <------ZmHOX2a(1)<---------ATERF1(1)              <---------LBD16  <------MYB46(1) -HSFB2a(2) ----------->GT1<---------MYB46(3)              --------->ALFIN1  <------ZmHOX2a(1)     <-   atccggagagagagaggaataatgggtggtggtggcggcagcgttagtaacgcgaatggaggtgttccggcgtcttcgaggaaggttattcaggatttga  10050300                                                         <---------ARR14(2)                                                         ------->TEIL                                                         XXXXXXXXXXXXXXXXXXXX>MIR172E                                                    --------->CCA1(2)            --------->ZAT14                     <---------ZAT18            <---------ZAT14                     --------->ZAT18         <---------MYB52(1)            --------->ZAT18                  <---------ANAC58         ----------->GT1           <---------ZAT6                    <---------ANAC58      ------->TEIL         <---------ANAC58                    <---------ANAC46   <---------REM1(1)         <---------ANAC46               <---------MYB46(3)   ------>ZmHOX2a(1)         <---------ANAC58             <---------ANAC58   XXXXXXXXXXXXXXXXXXXX>MIR172A/B          <xxx       <---------ZAT14                <---------ANAC46   --------->ARR14(2)                     -----   --------->GLK1(2)                  <---------ANAC58<---------YAB1<---------At4g35610        <----- -----ZmHOX2a(1)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxx   aggagattgtggagtgttctgagttagagatttatgcgatgcttgttgagtgcgatatgaatcctgatgaagctgttaatcgtcttctctctcaaggttc  10050400                      <-----------GT1      --------->ZAT2 <-----------GT1      <---------ZAT2<------------------------ANAC81      --------->At4g35610      <---------At4g35610  <----------DOF2 xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                         --------->YAB1 ---->MYB52(2)   <----------DOF2                                                         XXXXXXXXXXXX --TEIL          <---------DAG2                 <---------At4g35610          ----------->GT1 xxxxxxxxxxxxxx>smallRNA(se3)         <---------LBD16         <---------AHL20(2)      --------->AHL20(2)   gttcttccagcttcaatagctttttatctcttttttagtttctgggttttagcttcgaatttgtttaatggaacttgaatagcaaaaaaaaaatcaaaac  10050500                                                                                                    -                                                ------->TEIL                                        -                                        --------->YAB1                                          -----                                        <---------ICU4                                 <----------DOF2                  ===================================================================================               <-----------GT1         <---------ATHB12                                <---------DAG2         <---------AHL20(2)          --------->WOX13(1)                        <-----------HVH21<---- XXXXXXXX>MIR829.2--------------->AGL15--------->ICU4                      --------->GLK1(2) <-------   ttcaaggagttttaatttaaccttgtgaagaaatttttgcaatcatgttgaatctgttagaacttcttgtataagagaatgtgtcagaactttatttgat  10050600                                                                              --------->AHL20(2)                                                                           <---------AHL20(1)          <---------------AGL15                                            --------->AHL20(1)          --------------->AGL15                                           --------->AHL20(2)          ================================================================MADS_MADS         <---------ANAC58                                             <---------AHL20(2)         <---------ANAC58                                             --------->AHL20(2)         <---------ANAC46                                       <---------HSFB2a(2) ------>ZmHOX2a(1)                                              --------->HSFC1(1) -------->TOE2(3)                                               <---------HSFC1(1) -------->TOE1(3)                                               --------->HSFB2a(2) ---->GLK1(1)                                             <---------------AGL15             --------- =========================MADS_MADS                      <-----------------AGL3            <--------- -----GLK1(1)         ----------->GT1         <----------DOF2  <---------LBD16<---------AHL20(2)<---- --AHL20(2)      --------->YAB1            ------->TEIL  <-----------------AGL2 --------->WOX13(1)   ttccttaagtttcttgaaatagtaatgttattttggattttgttgaatcttttttgttatctgtttctggaaataaatatataaatcagtttttttctct  10050700  Previous    Next  AGI:  At4g18150.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66902.1); contains InterPro domain Protein of unknown function DUF1296 (InterPro:IPR009719) Range:  from: 10050222    to: 10053801    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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