Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            --------->ALFIN1                        <---------ANAC46                  --------->At4g35610                        <------MYB46(1)            ---------->DOF2                               <---                        <------MYB83             --------->ANAC58                        --------->ZAT6 ---------DAG2         --------->MYB111(1)       --------->ANAC58                     ------>ZmHOX2a(1) ----------DOF2        --------->MYB111(2) ------->GAMYB  <---------At4g35610        --------->TOE2(3) ------WRKY18(1)       <---------AtMYB61  --------->MYB46(3)                      --------->ARR14(2) ---->WRKY12           <---------DEAR3(1) <---------MYB52(2)        --------->ZAT6<---------ARR14(2)   gactttatcaaactcaccagaatgggaggtggaaggaagagacaacaaaccaagaaagtcagaagagttgtcactaagaccaagtatcctaaaactaggt  10045700                                                                                                <----                     --------->MYB52(1)                                                         <----                    ---------->DOF2                                   <---------bZIP60(2)       <----                   ------->GAMYB                                   ----------->HVH21            -----                   --------->AtMYB61                           <---------At4g35610              -----                  --------->MYB46(3)                           <---------ZAT2                  <-----                 --------->ANAC58                              --------->At4g35610        <---------WOX13(1)                 --------->ANAC58                              --------->ZAT2           --------->ATHB12               --------->MYB46(3)                    <----------ARF1  <---------ANAC46 <---------YAB1        --------->WOX13(1)                 <----------DOF2--------->ANAC58           --------->ANAC55(2) ----TEIL <---------ATHB12           --------->RAP2.6(2)  --------->ANAC58        <------ZmHOX2a(1)   tcttcgacagcaatcaaacaaccaaagggctgaactagaccgcctctttggatgttagacaagtaagctgtgatgtgttcatcaggaacgtgattgggag  10045800         --------->ARR14(2)         <---------GLK1(2)    --------->MYB52(1)                                                                       <------- --MYB83 <---------ARR14(2)          <XXXXXXXXXXXXXXXXXXXXMIR778       --------->At4g35610   <------- --MYB46(1)                       --------->LBD16                   --------->At4g35610  <---------ZAT14 -----At4g35610                  <---------DREB2C(2)                <---------At4g35610  <---------At4g35610 ---->At4g35610             <---------ANAC58                 ---------->DOF2             --------->ZAT14 ------>GT1                 <---------ANAC58      <---------------------WRI1----------->RAV1(1) ----DEAR3(1)     ----------->GT1<---------DEAR3(1)        --------->At4g35610 ------->GAMYB --------   gtgaaataacagatttggagtagttaaaagacttgccggtgtaaatggattgagcgaaatcagcaaagagagcagcatcaacagagtattgagcagtgtt  10045900                               --------->ZAT2                               --------->At4g35610                               ----------->RAV1(2)                    =======================RAV                              <---------ANAC46                    <-----------RAV1(1)                            ---------->DOF2      <---------TOE1(3)  <---------ANAC46                  <---------ANAC58 <---------ANAC58      <---------TOE2(3)  <---------ANAC58                  <---------ANAC58 <---------ANAC58 --ZAT6     <---------TOE1(3)  <---------At4g35610      <---------CCA1(2) <---------ZAT14 ----RAV1(1)<---------TOE2(3)  <---------ZAT2     <---------ARR14(2)     --------->ALFIN1         >>> ->ALFIN1--------->ALFIN1<---------ANAC58         --------->ARR14(2)   --------->ALFIN1        >>>>>>   ggatttttgaggttgaggtttcatgttgcttgcagctgagcttgaactctcgaatcccatagcttaggggaaagtgtggagtgagtttcgaccagaagaa  10046000         --------->At4g35610                                                                    -----         <---------At4g35610                                  <----------DOF2            --------->TOE2(3)    >>>>>>>>>TBF1                                     --------->DAG2                  <-----------GT1 >>>>>>>>>TBF1        --------->ATHB12        ----------->GT1 <---------DAG2   <-------TEIL   *TSS >>>>>>TBF1  <---------GLK1(2)           ---------->DOF2  <-----------GT1    <---------ARR14(2)<----- >>>TBF1--------->GLK1(2)            ---------->DOF2 ---------->DOF2         --------->ARR14(2)<-----   gaagaagaagaagctgattctgtatcatttgcagcaagagaaagaaagaagtaaaaaaagtttcctttttgatatttgggattcgtttttacctcaagat  10046100                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                           --------->MYB46(3)                                                                                           <---------MYB55(2)                                                                                   <------MYB83  ----                                                                                   <------MYB46(1)                                                                                   <---------ANAC58                                                                                  <---------DEAR3(1)                                                                        <-------TEIL     --------->AtMYB61                                                                        --------->SPL7  --------->MYB46(3)  <----------DOF2                <----------DOF2                     --------->ANAC58--------->WRKY38(1) ---->GLK1(2)             ------------>CBF                           --------->ANAC58----------->HVH21 ----ARR11(3)       <---------ANAC58                               <---------ALFIN1<---------ANAC58 ----GLK1(2)        <---------ANAC58     <-----------GT1         <---------ALFIN1 <---------MYB46(3)   tcttcttttcatgttttgttttgcttccttcaatgctttttttttgctactctgtttgcattctctcccacacgtacagcttgttcggtgaccaccaccg  10046200                          <---------AHL20(2)                       --------->TOE2(3)                   <---------DAG2                   <----------DOF2                               --------->ICU4   <----------DOF2<---------DAG2     <---------YAB1       <---------AtLEC2 >AtMYB61      <-----------GT1   <----------DOF2          <---------ANAC46 -ALFIN1      <-----------GT1    <---------DAG2     --------->DAG2       <---------AHL20(2) >DEAR3(1)<---------AHL20(2)    <---------ANAC58   ---------->DOF2 <---------ANAC55(2) ----->ARR14(2)---------->ID1   <---------ANAC58--------->AHL20(2) --------->ANAC55(2)  ------->TEIL   attcactttcattttttttcccttttcttaaattgctttatttttgtgaataaaaaagttccatggaataagtatttttttgttactctgaatctattga  10046300                              <---------ARR11(3)                        <---------AHL20(2)                                         ------>ZmHOX2a(1)                       --------->AHL20(2)                                   <---------ICU4                       <---------AHL20(2)                                --------->YAB1             <                       --------->AHL20(1)      <---------ARR11(3)       <---------YAB1      <--------             <----------DOF2  --------->ARR11(3)                      <----------DOF2       ---------   agaaatggctaatgtctttctcaaatttaatagaccttcaaaatttcaacatattttggtcaaaactttcaactttgataatgtcctcatacttctgaaa  10046400    ---------->DOF2                                     --------->ANAC58                  <---------ANAC55(2) ----------ID1                                          --------->ANAC58                  --------->ANAC55(2) -HSFB2a(2)                                   <---------ZAT6      ---------->DOF2   <---------TOE2(3) >HSFB2a(2) <----------DOF2       <---------YAB1      ---------->DOF2   --------->At4g35610        <-   aaaaaacaaagtttcttttgagccaaatttgaaactatgtttagtcgagagttaccaaaagcaatctccaaagcatctaaacgactgatgttatgtaaga  10046500          <---------ANAC58                                     <-----------GT1          <---------ANAC58                        ----------->HVH21       <----------DOF2   --------->MYB46(3)     <---------At4g35610                                 -   <---------ATHB12     >>>>>>>>>>>>>>>>>LFY    --------->At4g35610----------->GT1                <-- --------ATHB12 <-------TEIL             <---------YAB1----------->GT1                        -------   aatcaatgactttcttggttcataagaaccaatgttagaaaatatgattcttctgacaggtttattaactagtaacaagaatatatgactatcaaatgtt  10046600  Previous    Next  AGI:  At4g18130.1    Description:  PHYE (PHYTOCHROME DEFECTIVE E); G-protein coupled photoreceptor/ signal transducer. Identical to Phytochrome E (PHYE) [Arabidopsis Thaliana] (GB:P42498); similar to PHYA (PHYTOCHROME A), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT1G09570.1); similar to PHYD (PHYTOCHROME DEFECTIVE D), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT4G16250.1); similar to PHYB (PHYTOCHROME B), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT2G18790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66896.1); similar to Phytochrome E (GB:P55004) Range:  from: 10042149    to: 10046094    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g18140.1    Description:  similar to NLI interacting factor (NIF) family protein [Arabidopsis thaliana] (TAIR:AT5G46410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66897.1) Range:  from: 10046587    to: 10049405    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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