Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                ----------->RAV1(2)               <---------ARR11(3)               --------->ARR11(3)               --------->ARR14(2)             <---------YAB1  --------->MYB52(1)   --------->HSFB2a(2)   --------->ANAC58      --------->ZAT6           <---------HSFB2a(2)   --------->ANAC58   ------>ZmHOX2a(1)           --------->HSFC1(1)   <---------------AGL15 ---------->DOF2   ------>ZmHOX2a(1)        --------->ZAT6             --------------->AGL15        - -----------WRI1 ------>ZmHOX2a(2)    <---------YAB1          <---------ZAT18              --------->TOE2(3)   gaacaaagcaacttcatgatcctcctctcactacctgatgatgctaactcttctagacatattatgcactcttcttctattggtattagacaaccttgag  10037300                                                                                                    <                                                                                               <-----      -------->ATHB1                                                                           <-----      <---------ICU4                                                                           <-----      --------->ATHB12      <---------ZAT14                                                    <-----      --------->YAB1        --------->ZAT14                                                   -------     --------->ICU4     --------->YAB1                                   <----------DOF2      <------NtERF2     <---------ATHB12  <---------ATHB12                           <-----------GT1            xxxxxxxx     <---------YAB1   ------>MYB46(1)      <<<<<<<ZML2         --------->ANAC46              xxxxxxxx   <---------ICU4     ------>MYB83      <---------HSFB2a(2)    --------->ANAC58             ---------   --------->YAB1    --------->WOX13(1) --------->HSFB2a(2)    --------->ANAC58             <--------  --------->ICU4   --------->MYB46(3)   <---------HSFC1(1)   ------->GAMYB         <<<<<<<<<TBF1 <--- -------->YAB1   <-----------GT1        --------->HSFC1(1)  --------->MYB46(3)  <<<<<<<<<TBF1<-------   agtcataatcattgactcttaaccaatcactatacaacgtttctagaacaacttcaacttcaaccaagaaaccatctttttcttcttcttcaaggtggcg  10037400                      --------->ARR14(2)                      <---------ARR11(3)         --------->YAB1      --------->WOX13(1) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       <-------- ----RAP2.6(2)        <---------GLK1(2)                                                    --------->ARR11(3) ----ANAC58           --------->ARR11(3)                  --------->ARR11(3)   <---------MYB52(1) ----ANAC46           <---------ARR14(2)       <<<<<<<<<GATA-1                 --------->DOF5.7(2) ----ANAC58         <---------TOE2(2)          <<<<<<<<<GATA-2                xxxxxxxxxxxxxxxxxxxxxxx -->ATERF1(1)       <---------TOE1(2)          <<<<<<<<<GATA-3               --------->ANAC46 xxxxxxxxxxxxxxx>smallRNA(se3)                 <<<<<<<<<GATA-4               --------->ANAC55(1) xxxxxxxxxxxxxxxx>smallRNA(fl3)               --------->ARR14(2)           <---------ALFIN1--------->AHL20(1) >ALFIN1<---------ATHB12                 --------->At4g35610 <----------DOF2 --------->ANAC58 -DEAR3(1)  <-----------ARR10<------ZmHOX2a(1)<---------ARR14(2)  <---------ANAC46  ----------->RAV1(1) ---NtERF2  --------->ARR11(3)           <---------At4g35610------>ZmHOX2a(2)--------->ANAC58 --ATERF1(1)<---------ARR11(3)        <----------DOF2     <---------ARR11(3) <---------ANAC55(2)   tcttatatcaatcaggtcttcgcagattttaggaacaatactttgctgaatccacttgttgatctttgacttggacaacacgttagccacaaatatactg  10037500                                     --------->ARR14(2)                                 <---------LBD16                                ------>ZmHOX2a(2)                               --------->GLK1(1)                               <------ZmHOX2a(2)                               <---------GLK1(1)                              --------->ARR11(3)                              --------->ARR14(2)                      <-----------RAV1(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 ======================HOX2a_HOX2a                 =====================HOX2a_HOX2a                                                xxxx                 <------ZmHOX2a(1)   <---------ARR14(2)                                         <xxxx             --------->ALFIN1 <---------ARR14(2)                                                -----            <---------MYB52(1)<---------ARR11(3)  <-----------RAV1(1)                           -----           --------->LBD16--------->ALFIN1 --------->GLK1(2)        ------>ZmHOX2a(1)  <xxxxxxxxxxxxx ---GT1  <---------LBD16--------->ZAT2  <xxxxxxxxxxxxxxxxxxsmallRNA(si3)  <----------DOF2     <------ >smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <----------DOF2      <xxxxxxxxxxxxxxxx   catatttcttctccggtgaggaaaacaggtgggatctcggatgcgattcttactgttgcattcttctttcctagcgatttttgttgagccaaagtttcac  10037600                                                          =====================HOX2a_HOX2a                                                          --------->LBD16                                                       <------ZmHOX2a(2)                                                      --------->ARR11(3)                                                      <---------ARR11(3)                                                      --------->ARR14(2)                                                      <---------ARR14(2)                                                     ==========================HOX2a_HOX2a                                                     <------ZmHOX2a(1)      <------ZmHOX2a(1)                             <---------HSFC1(2)  <---------MYB52(1)    --------->At4g35610--------->ATHB12 xxxxxxxxxxxxxxxxxx>smallRNA(se3)         <---------YAB1  ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ANAC58   <---------HSFB2a(1) ---->MYB46(3)      <---------ARR14(2)    --------->ICU4------>ZmHOX2a(2) ---->ANAC46--------->LBD16      <---------ANAC58   --------->HSFC1(2) xxxsmallRNA(i)     --------->GLK1(2)    --------->ANAC55(2) -----GT1 <---------LBD16        <---------ANAC46   --------->HSFB2a(1) ------>ZmHOX2a(2)    -------- xxsmallRNA(se3)    --------->ARR14(2)   <---------ANAC55(2)        <---------YAB1          <-------TEIL   gaccgctaggactccggataagaatccgctcaattccttggatacttattgagaaggatcctgaatttttgtgatcgacgatgtgagtcttagattcata  10037700                                ---------->DOF2                              <---------AHL20(2)                              --------->AHL20(2)                           <---------ICU4                           --------->ATHB51          <---------YAB1                           <--------HAHB4          <---------ICU4                                  xx                          --------->ICU4       --------->AHL20(2)                            <-------                  --------->ZAT18              <---------AHL20(2)                      <----------DOF2    --------->GLK1(2)--------->ANAC46         <---------AHL20(2)                 ------>ZmHOX2a(2)<-- ->YAB1           <---------ZAT18             --------->AHL20(2)        ------------>CBF   <---------   gtttagaatccatgttgatgtgccctccataattaaaagccttgttgattaaattatgtctgttttggctctaaaacaatcgatctcttctttatttata  10037800                                                                                                    -                                                                                                    <                                                                                                    <    <------------CBF                                                                                -   --------->ATHB12                                                                                <-  <-------TEIL            <---------TOE2(3)                                                        <- xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <-----------GT1    ----------->GT1                    <-------- --AHL20(2)               <---------TOE2(2)      ----------->GT1              <---------AHL20(2)   -- -------TOE2(3)           <---------TOE1(2) --------->AHL20(2)               --------->AHL20(2)<----- --TBP                  <---------MYB52(1)  <---------AHL20(2)               <---------AHL20(2)------   gaggttcattggagtctccaaattcacttaggtttcaaatttacatttatttagaaaaatagaaaaaatgatgccctaaataaatggaacatgtttaatc  10037900 -------->ATHB12 --------ATHB1 ---------ICU4 -------->YAB1                                                                 <---------YAB1 --------YAB1                      --------->MYB52(1)                 >>>>>>>>>>WRKY6 --------ATHB12                  <---------MYB59                      >>>>>>>>>>WRKY11 -AHL20(2)             <---------AHL20(2)                            --------->WRKY12 ------->ICU4          --------->AHL20(2)                            --------->WRKY45 ----ATHB12        --------->AHL20(2)                                --------->WRKY38(1)         <--- ------>CBF        <---------AHL20(2)      <---------AHL20(2)      <---------At4g35610           ----   aatgattatctaaacacaaaattaaaaaattcgggccaaactgattttttttgttttgtcaaatgttttagttgactaagtattatcaactaaaaacaat  10038000                     <---------HSFB2a(2)                    ----------------->AGL3             <---------LBD16      --------->ARR11(3)                                                                          ---      --------->AHL20(1)                                                                          <--      <---------ARR11(3)        --------->AHL20(2)                                        <---------O2      <---------AHL20(1)        <---------AHL20(2)                                        --------->O2     --------->CCA1(2)       ----------->GT1         ----------->GT1                 --------->ANAC58    <---------ARR11(3)      ----------->GT1          <----------ID1                  --------->ANAC58    --------->ARR11(3) ---------->DOF2          <---------AHL20(2)     ----------->GT1  <---------ALFIN1 ------AHL20(2)  <---------ARR14(2)            <---------AHL20(2)  --------->DAG2  <---------ANAC58 ----->AHL20(2)  --------->ARR14(2)            --------->AHL20(2) ---------->DOF2  <---------ANAC58   taaacagatatatttttcggattccaaaagaagtttaaatatagttgaatttaatgggaaaaaatagaaaaaggagtaaaaaatgtcgagccacttggtc  10038100                                                                            <---------ICU4                                                                       --------->AHL20(2)                                                                     <----------DOF2                                                              --------->GLK1(2)                                                              --------->ARR14(1)           <---------ICU4                                    <---------GLK1(2)           --------->ATHB12                                  --------->ARR11(3)           -------->ATHB1                                    <---------ARR11(3)           --------->YAB1     <--------HAHB4                 --------->ARR14(2)           <------------ATHB5 --------->YAB1                 <---------ARR14(2)  <----------DOF2          <---------ATHB12    <---------ICU4              <---------TOE2(3) -------->HAHB4      -----        --------->WOX13(1)   <------ZmHOX2a(2)           ---------->DOF2    --------->YAB1   <-------      ------------>CBF       <---------ATHB12           --------->AHL20(2) --------->ICU4    <-------   <-----------GT1   <---------MYB46(3)                 <---------AHL20(2) <---------ATHB51  -------- --->ZmHOX2a(1)     <---------MYB52(1)             ----------------->AGL3--------->YAB1   <---------GLK1(2) --------DOF2      <-------GAMYB      *TSS         ==================================================   ctttgttactcaatcattcgccgttgttccgatcattactcttctcttctccatccaattaaagattctctcttttaataatgctttcaaaagaatatct  10038200  Previous    Next  AGI:  At4g18110.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G54990.1); similar to hypothetical protein GSPATT00028263001 [Paramecium tetraurelia strain d4-2] (GB:XP_001424626.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 10037089    to: 10037730    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g18120.1    Description:  AML3 (ARABIDOPSIS MEI2-LIKE); RNA binding. similar to AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5), RNA binding [Arabidopsis thaliana] (TAIR:AT1G29400.1); similar to AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5), RNA binding [Arabidopsis thaliana] (TAIR:AT1G29400.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO66894.1); similar to AML1 [Citrus unshiu] (GB:AAT39004.1); similar to AML5 [Medicago truncatula] (GB:AAT38999.1); contains InterPro domain RNA recognition motif 2 (InterPro:IPR007201); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:I Range:  from: 10038138    to: 10042260    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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