Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           <---------LBD16                                                       --------->GLK1(2)                                                      ------>MYB83                                                      ------>MYB46(1)                                                    --------->TOE2(3)                                                    <---------MYB59                   ----------->RAV1(1)              --------------->AGL15                  <----------ID1                    <---------------AGL15                  --------->ANAC46                 <-----------------AGL3                        ----                  --------->ANAC58                 <-----------------AGL1                    --------                  --------->ANAC58      <xxxxxxxxxxxxxxxxsmallRNA(i)   ------->TEIL          -------- ------>DAG2<---------HSFB2a(2)    <---------LBD16 ----------------->AG<---------YAB1      <--------- ------>DOF2--------->HSFB2a(2)  --------->GLK1(2) ----------------->AGL1        <---------YAB1  ----   aaagctcaattcttccaaaaacgacataagagactaatctggaatcaaactcaacctaatctggaatcgaatgaatattgttcatgagagaactcaggca  10036200                                                                ------->GAMYB                                                                --------->AtMYB61        <---------YAB1                                         --------->MYB46(3)      --------->YAB1                                   <---------AHL20(2)      <---------ICU4                                   --------->AHL20(2) ----->ANAC58              <---------YAB1           ----------->GT1                         <-------- ->ANAC58              --------->ARR11(3)        <---------At4g35610            ---------->DOF2     < ->ANAC58<---------ICU4--------->ARR14(2)        --------->At4g35610           ------>ZmHOX2a(1)   -- --RAV1(2)             <---------ARR11(3)      <-----------RAV1(2)            --------->TOE2(3) <---- ----->ANAC58    --------->ANAC55(2)         <-----------HVH21 <---------MYB55(2)   <----------ID1---   agctaaaatcatcattttcatgtaatatcttcatagatagagactaatgtcagatgtttaattcaaccaccatattgcatcctaaagctacaaactttaa  10036300            --------->AHL20(2)      -------->P   --------->At4g35610   <---------At4g35610                                                                           <--- --DOF2    <---------ATHB12                              ------>ZmHOX2a(1)                      ----- -------TEIL--------->YAB1                   ===================HOX2a_HOX2a                   ------- ------->CCA1(2)        <----------ID1       ------>ZmHOX2a(2)                                ------- -----TOE2(3)       ---------->DOF2     <---------WOX13(1)                          --------->DAG2 ------>ARR11(3) --------->TOE2(3) --------->LBD16      --------->TOE2(3)          ---------->DOF2 <-   gatacagctaccaataaaaacttaaaggaacaaaacccagagattgatctactaaaatcctaaaactctgtgaaatcaaatgagaaaaagggtttacctt  10036400                                                                                    --------->ARR14(2)                                                                              --------->RAP2.6(2)                                                                              --------->DREB2C(2)                                                                              --------->ANAC58                                                                              --------->ANAC58                                                                             --------->DEAR3(2)                                                                             --------->MYB46(3)                                                                             --------->ATERF1(1) --------->At5g28300                                                        --------->SPL7 ------WRKY18(1)                     --------->At4g35610                   <---------PCF5<---------ANAC58 ------>HVH21                        <---------At4g35610                   --------->TCP20<----------DOF2 -->TOE2(3)                --------->At4g35610                             <---------PCF2<---------ANAC58 -->TOE1(3) <-----------HVH21   ------->TEIL                       --------->ANAC58 <---------ICU4<-- --------DEAR3(1)          <---------At4g35610                     --------->ANAC58 <---------ARR14(2)   gacggtgattctacggtcactctggggtctgatgaacttagcagacctcttcttcacaaccttcttggtaagcaatgggaccgccatatttgcttcttcg  10036500                                                                  --------->ZAT6                                                                 --------->ZAT18                                                                 --------->SPL7                                                                 --------->ZAT14             ---------->DOF2    --------->ZAT2        <-----------TBP       <---------ARR11(3)       --------->At4g35610  <----------DOF2       --------->ARR11(3)       <---------At4g35610  *TSS        <---------ZAT14      <---------GLK1(1)   ---------->DOF2         --------->ARR11(3)  <------ZmHOX2a(2)     --------->LBD16           <---------ARR11(3)      <---------GLK1(1) --------->ARR11(3)    <---------ANAC46    --------->TOE1(3)   <---------ZAT18 <---------ARR11(3)    <---------ANAC55(2) --------->TOE2(3)   --------->ZAT18      <-----------GT1 -------TOE1(2)        ----------->GT1--------->MYB46(3)--------->YAB1 <---------TOE2(3)   taagatcgatatctcaaaagcgactccgtaaaacagctgaacaaacctaaaatgtcttttataagcgtacactagggtttctgatattacattactaaat  10036600                                   <----------DOF2                               --------->ANAC58                               --------->ANAC46                               --------->ANAC58                           <-----------HVH21                          <----------DOF2                      <---------GLK1(1)                      --------->GLK1(1)       <-----------GT1                     --------->ARR11(3)   <---------MYB52(1)                     <---------ARR11(3)---------->ID1                                       <--------             ------------>CBF <---------At5g28300            --------->ARR11(3)             ---------    <---------O2   <---------TOE2(3)<----------DOF2      ---------->DOF2                    <-------- ----------->HVH21--------->YAB1   <---------DAG2      <---------MYB52(2)                   ---------   gggctcacgttgtggcccaataagatttctttcacggccttttcgttttttccttcaactaaagaaattgtatgctcttaagaaaacaatctaatttatt  10036700                                                                                           <------MYB83                                                                                           ----------                                                                                     <---------ARR11(3)                                                                                     --------->ARR11(3)                                                                               --------->YAB1                                                                             <---------WOX13(1)      ----------->GT1                                                      --------->ATHB12<---------ANAC46   ---------->DOF2                                                        <---------YAB1   <------MYB46(1) -AHL20(1)                                ---------->ID1             <---------AHL20(2)    <---------ANAC55(2) >AHL20(2)                 --------->WOX13(1)<---------MYB52(1)     --------->AHL20(2)    --------->MYB59 -AHL20(2)       <----------DOF2         <-----------GT1            <---------AHL20(2)--------->CCA1(2) >AHL20(1)       <---------DAG2 <---------TOE2(3)                ----------->GT1   ----------->ARR10   aaactaaaaggaaaatacacttttttcttcaattaagaaaatttttcgttttttttttttcactggaagattaattttcattgatgagatattaggtgaa  10036800                                                                       --------->ANAC58                                                                       --------->ANAC58                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                             ------>ZmHOX2a(1)                                                             --------->LBD16                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                             <---------LBD16                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                         --------->ARR11(3)                                                         <---------ARR14(2)              <xxxxxxxxxxx                                                         --------->ARR14(2)             ----------->GT1                                                         <---------ARR11(3)     xxxxxxxxxxxxxxxxxxxxx                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             --------->LBD16            --------->GLK1(1)     xxxxxxxxxxxxxxxxxxxxxxx                            --------->HSFB2a(2)         --------->RVE1(1)   --------->ANAC58                            <---------HSFB2a(2)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxx                            <xxxxxxxxxxxxxxxxsmallRNA(i)<---------GLK1(1)   --------->ANAC58                            --------->LBD16            --------->ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <---------LBD16             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <-------              <------ZmHOX2a(2)--------->ARR14(2)      <---------ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <------NtERF2 --------->ARR11(3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxx         ------>NtERF2  <---------ARR11(3)         ---------->DOF2 xxxxxxxxxxxxxxxx>smallRNA(i)<-----        --------->DEAR3(1)------>ZmHOX2a(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  xxxxxxxxxxxxxxx    --------->DAG2  <---------ANAC55(2)      <------ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   ---------->DOF2  --------->ANAC55(2)     <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ->GT1 --------->DEAR3(2) ==========================HOX2a_HOX2axxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  -   atacaaaaagccgacgatcaatacatgatcccggaaactaagtcgaaggatgacaaagatatcctcggaaactaagccaagaaatatggagagcaaataa  10036900                                                                                           --------->ARR11(3)                                                                                           <---------ARR11(3)                                                                                        ------>MYB83                                                                                        ------>MYB46(1)                                                                                      <---------MYB111(2)                                                                                      --------->AtMYB61                                                                                      --------->MYB46(3)                                                  ---------->DOF2                     <---------MYB46(2) xxxxxxxsmallRNA(si3)                          ----------->RAV1(1)                    <---------MYB111(1) xx>smallRNA(si3)                           --------->ANAC58                         --------->ANAC58 >smallRNA(fl3)                             --------->ANAC58                         --------->ANAC58 xxxxxxxxxxxxx>smallRNA(si3)             <---------At4g35610                         <xxxxxxxxxxxxxxx --MYB52(2)                              --------->At4g35610                        <xxxxxxxxxxxxxxxx xxxxxxxxxx>smallRNA(fl3)   --------->YAB1  --------->ANAC46                  xxxxxxxxxxxxxxxx>smallRNA(i) ------GT1      --------->ANAC58      <------ZmHOX2a(1) <---------GLK1(1)    --------->GLK1(2) xxxxxxxx>smallRNA(fl3)    ----------->TGA1--------->ZAT18 --------->YAB1   <---------GLK1(2) -------->ZAT6  --------->ANAC58    <---------TOE2(3)   --------->GLK1(1)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   caacactacaagagaaacaagtcaaaacaatgacgactaaggaagcacacaacaaaggaaatcaaaactcttaactcagaatctagcaccaaacatcttg  10037000               <-----------------------TaNAC69(2)             <---------ARR14(2)             --------->ARR14(2)           --------->LBD16                                                                --------->YAB1          --------->HSFB2a(2)                       <----------DOF2                  <---------YAB1          <---------HSFB2a(2)                     ---------->ID1                    --------->ARR11(3)      --------->WOX13(1)                      <---------DAG2                        <---------ARR11(3)    <---------YAB1                            <----------DOF2                      --------->RVE1(1)   <-----------GT1                           <------------------------ANAC81<-----------GT1    <----- xxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <----------DOF2--------->WOX13(1) xxxxxxsmallRNA(si3)--------->ARR14(2)<----------DOF2          --------->TOE2(3)   --------->CCA1(1)   catattatcaatccagaaacgagaaacgcttgaattgtttctttcttcctttttctttttttgtttcttaatttctttttacaaaatatcattcatggtg  10037100  Previous    Next  AGI:  At4g18100.1    Description:  60S ribosomal protein L32 (RPL32A). Identical to 60S ribosomal protein L32-1 (RPL32A) [Arabidopsis Thaliana] (GB:P49211;GB:Q8LC86;GB:Q9SVW1); similar to 60S ribosomal protein L32 (RPL32B) [Arabidopsis thaliana] (TAIR:AT5G46430.2); similar to 60S ribosomal protein L32 (RPL32B) [Arabidopsis thaliana] (TAIR:AT5G46430.1); similar to ribosomal structural protein [Brassica juncea] (GB:ABM30195.1); contains InterPro domain Ribosomal protein L32e; (InterPro:IPR001515) Range:  from: 10035497    to: 10036553    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g18110.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G54990.1); similar to hypothetical protein GSPATT00028263001 [Paramecium tetraurelia strain d4-2] (GB:XP_001424626.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 10037089    to: 10037730    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version