Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    <-----------GT1  --------->YAB1 --->HSFB2a(2) ----HSFB2a(2) ----HSFC1(1)                                  >>>>>>>>>>>>>>>>>LFY --->HSFC1(1)                                 --------->ZAT6 ---LBD16                                   <-----------GT1                     <----------DOF2 --->AGL15                           <------------MYB.PH3(1)                 --------->ARR11(3) ----AGL15                         --------->MYB52(1)           --------->MYB46(3)   --------->ZAT6 - -----AGL3                        ----------->HVH21           --------->YAB1 <---------ARR11(3)   ---   gaaataacaattttctcatcgtcgtttttcttcgatgtaacggatttaacaccattgttatctataacaaacaagtgaacatctttagcactaatcgaac  9953600     <---------bZIP60(1)                                                                            <     --------->bZIP60(1)                                                                          <--     --------->TGA2(1)                                                                            <--     --------->REM1(1)     --------->MYB46(3)                                                <-------     <---------TGA2(1)    --------->ANAC58        --------->MYB52(1)                        ---------    <-------TEIL          --------->ANAC58    --------->ANAC58                              ---------   <-----------GT1   --------->DAG2           --------->ANAC58                              --------- ---------->GT1     ---------->DOF2   <---------At5g28300   --------->YAB1  <---------At4g35610  ---- ------->DOF2  --------------->AGL15 <-----------GT1      <---------ARR14(2)--------->At4g35610  <---   aaaagttacatcactcacttcaaaaagcactcaccaattttacagtggaagccaatggagtatcgtaatagaaccaagagctgaaacaagagaaacgtca  9953700       <------ZmHOX2a(1)    <---------LBD16 --------->YAB1                                                                   <------ZmHOX2a(2) ---------YAB1                                                                   --------->ARR11(3) -------ICU4                                                                     <---------ARR14(2) ------HAHB4                                                          --------->HSFC1(1) ----TGA1                                                             --------->HSFB2a(2) >bZIP60(2)                                                           <---------HSFB2a(2) >ANAC58                                                   <---------At4g35610   --------->ARR14(2) >ANAC58                    ---------->DOF2                <---------ZAT14       <---------ARR11(3) ----->ICU4   <---------At4g35610                   <---------WRKY38(1)--------->LBD16 ------YAB1   --------->At4g35610                ----------->GT1  --------->GLK1(1)<-------TEIL   ttattatcaggaattgagctaaactgagtcaaaagaaacttacagggacaatggtcaatagtgctgcgatttccagaattgaagatccatcgagattgct  9953800          ---------->DOF2          <<<<<<<<<<<<WRKY18        <<<<<<<<<WRKY18      <-----------HVH21                               ---------->DOF2  <---------ARR14(2)                                <---------HSFB2a(2)                       -------  --------->ARR14(2)                       --------->YAB1                                    --------  --------->GLK1(2)                    <------ZmHOX2a(1)    ----------->HVH21       ----------->GT1   cacaaatctgtcaaaagtcaatttgaacaaaaaaaccttgaggaatcacaaattctaaaagtctgacgaatgagaggtcattgagagagtaaacaaaaag  9953900                                                                                           *TSS                                                                       <---------LBD16   ----------->GT1                                                              --------->WOX13(1)     --------->DAG2                 <----------DOF2                           --------->GLK1(2)  <------ZmHOX2a(2)     <----------DOF2   <---------ARR11(3)                  --------->ARR14(2)--------->ARR11(3)  --------->GLK1(2)    --------->ARR11(3)                  <---------ARR14(2)<---------ARR11(3) -->DAG2  <---------At5g28300                             <---------GLK1(2) --------->GLK1(1) -->DOF2 <-----------GT1                        <----------DOF2  --------->YAB1     ---------->DOF2   agagaagctttttactgttctttgagatgtttgtttggatttagagtctgctttggtacagaatccatcaaaactcggagatcaaaaaaagttgtaaact  9954000                                                            ----------->GT1                                                            <---------DEAR3(2)                                                          --------->SPL7                                                        <---------SPL7                                                       --------->DEAR3(1)                                                      --------->DEAR3(2)                                                     ------->TEIL                                                    <---------ARR14(2)                                                  --------->ANAC58                             <-----                                                  --------->ANAC58                          <--------                                                  --------->ANAC46                     <----------DOF2                  <<<<<<<<<<WRKY26             <------ZmHOX2a(2)    --------->YAB1    <---------ANAC58               --------->WRKY38(1)     <------MYB83 --------->ARR14(2)                <---------ANAC58      <---------MYB46(3)               <------MYB46(1)--------->MYB46(3)           <---------WOX13(1)  --------->MYB46(3)                  --------->MYB59--------->MYB52(1)           <------------CBF <-   tcgaacagtcgttctcgttgatcaactatatagatttagtttggtttggatcacgaaccggccggtttaatcaaaataatctcagattgcttttgttatt  9954100    <-----------ARR10                                             ------->MYC2    <---------ARR11(1)                                            <-------MYC2    --------->GLK1(2)                                             <-------MYC3              ---------    ------->TEIL                                                  ------->MYC3              --------- <---------ANAC55(2)            <---------ATHB12               <---------ALFIN1             <-------- --------->ANAC55(2)           ------>MYB46(1)                --------->MYB46(3) <---------ICU4 ----YAB1                 <-----------GT1                    ------->TEIL        <--------HAHB4 -YAB1                --------->TOE2(3)                   <---------MYB52(2)    <---------YAB1      < ----------GT1 >>>>>>>>>>GATA-1------>MYB83           --------->MYB46(3)      --------->YAB1<--------   gttacgaatctatgctcgatttcacattaaaccaaacatggactcactaatctgcatcaaacgaaccacgttctattctaccatcattttggaaaatcta  9954200    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------------->AtSPL8 >GLK1(2)------>MYB46(1)              ------->MYC3 >ARR11(3)                            <-------MYC3        ------>ZmHOX2a(1) -ARR11(3)          <---------YAB1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->MYB52(1)         <-- ---------YAB1--------->AHL20(2) ------>NtERF2           --------->TOE2(3)                  --------- ---ARR10------>MYB83      <---------ALFIN1  <-----------GT1       --------->MYB52(1)   ---------->DOF2   ttctgagtaccatccatttattctgagtaccactcggccatgtgtaattacatctctctccttaatgaataactgagggagaattcaaaataaagagtaa  9954300                                                                                                    <                                                                                                    <                                                                                                    -                                                                                               ------                                                                                               <-----                                                                                             ------>NtERF2                                                                                            ---------                                                                                           --------->ATERF1(1)                                                                                           --------->RAP2.3(1)                                                                                           <------NtERF2                                                                                          ------>NtERF2                                                                                          --------->LBD16                                                                                          <---------RAP2.3(1)                                                                                         --------->ATERF1(2)                                                                                         --------->RAP2.3(2)                                                                                         <---------ATERF1(2)                                                                                         <---------DEAR3(1)                                                                                        --------->ORA47(2)                                                                                        --------->DEAR4(2)                                                                                        --------->ATERF1(1)                                                                                        --------->RAP2.6(1)                                                                                        --------->RAP2.3(1)                                                                                        --------->ERF1                                                                                        <------NtERF2                                                                                        <---------LBD16                                                                                       ------>NtERF2<                                                                                       <---------ATERF1(1)                                                                                       <---------RAP2.3(1)                                                                                       --------->ABI4(1)                                            <---------GLK1(2)                         --------->DEAR3(1)                                         --------->LBD16         --------->TGA1a      <---------ATERF1(2)                                        --------->ANAC46         <---------O2         <---------DEAR3(1)                                        --------->LBD16          <---------TGA1a      --------->RAP2.3(2)                                       <---------LBD16           <---------ANAC58     --------->ATERF1(2)                                <-------GAMYB--------->GLK1(2)   <---------ANAC58     --------->RAP2.3(3)                                ===========================================MYC_MYB   --------->ATERF1(1)                               --------->MYB52(2)       ------>NtERF2                --------->DEAR4(2)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 --------->RAP2.3(1)                               <---------MYB46(3)    ------>NtERF2                   --------->ERF1 -                               --------->MYB55(2)   --------->DEAR3(1)               --------->ORA47(2)                               <---------DEAR3(1)   ----------->HVH21      <-----------GT1<---------ATERF1(1)    ----------->GT1          <-----------HVH21<xxxxxxxxxxxxxxxxsmallRNA(i)<-----------GT1--------->DEAR3(1) -------ATHB12           --------->MYB52(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------RAP2.3(1) -->GT1   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------ATERF1(1)   atcatttagtaaaaaaaaaaaaaaaaaaaacggtcgttgctcccgcgattctctccgacgacttcggacgtgattttttccgacttcgccgccggcgact  9954400               <------NtERF2              <---------ATERF1(1)             --------->ATERF1(2)                                           <xxxxxxxxxxxxxxxxsmallRNA(s)             --------->DEAR3(1)                                         --------->ANAC46             <---------DEAR3(1)                                     <xxxxxxxxxxxxxxxxsmallRNA(s)             <---------ATERF1(2)               <---------At4g35610<---------ANAC58            <---------LBD16           --------->LBD16            <---------At4g35610      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->At4g35610<---------ANAC58 ---------At4g35610                  --------->ATERF1(2)         --------->ZAT2 ---------ZAT2------>NtERF2          <---------ATERF1(2)         --------->HSFC1(2)              <--- -------->ZAT2--------->LBD16       <---------LBD16              <---------HSFC1(2)            <----- --->O2     --------->ATERF1(1)    <---------At5g28300           --------->HSFB2a(1)--------->At4g35610 ----O2--------->ARR14(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->At4g35610<---------At4g35610 >DEAR3(1) <---------RAP2.3(1)    <-----------GT1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       ------ ---------GLK1(1)       --------->At4g35610 <<<<<<<<<AtCCA1  --------->DEAR3(1) --------->GLK1(2)---- -------->At4g35610     <---------At4g35610 <<<<<<<<<AtLHY <xxxxxxxxxxxxxxxxsmallRNA(i)   ---------->DOF2   tgagctccgatttcgccggcgatttgagctctaattttaccggcgagttagcttccaatatcgccgtagcttccaagccgataatctgctcccaaagtga  9954500  Previous    Next  AGI:  At4g17910.1    Description:  zinc finger (C3HC4-type RING finger) family protein / pentatricopeptide (PPR) repeat-containing protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO63397.1); contains InterPro domain GWT1; (InterPro:IPR009447) Range:  from: 9951186    to: 9953991    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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