Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             --------->MYB46(3)                                                                         ------>MYB46(1)       --------->ZAT2                                                    ------>MYB83       --------->At4g35610                                             <---------MYB46(2)       <---------ZAT2                                                ------>MYB46(1) <---------ZAT14                                                     ------>MYB83 --------->ZAT18                                                     -------->P --------->ZAT14                                                    <---------ALFIN1 <---------ZAT18                                           ------->GAMYB --------->MYB52(1) ------>ZAT2--------->ARR14(2)                            --------->MYB46(3) -------At4g35610            <---------HSFB2a(2)        --------->YAB1 <---------MYB59 -------->RAV1(2)            --------->HSFB2a(2)        <-----------GT1<---------MYB111(1) -------ZAT2<---------ARR14(2)                       --------->YAB1<---------ALFIN1   <---------MYB46(3) ------>At4g35610        <----------DOF2        <----------DOF2  --------->ANAC46  <-----------RAV1(1)   agctgcactagctggatttgatttcttctttctagacttctcttcttctcctttgtaataaccatctccccaacctaacaacactgtgttgttgttgttg  9935200                              <---------HSFB2a(2)                              --------->HSFB2a(2)                        --------->ATHB12                       --------->ICU4                  <---------MYB52(1)                 <-----------HVH21             <---------ARR14(2)   <---------ZAT14                                        <---------ANAC46             --------->ARR14(2)   --------->ZAT14                                        <---------ANAC58        --------->LBD16<---------YAB1--------->ANAC46                               --------->O2   <-        ------>NtERF2<---------At4g35610   --------->SPL7               ---------->DOF2  <---------ANAC58       <---------DEAR3(1) <---------WOX13(1)                     ------>ZmHOX2a(1)  <---------O2  <--      <---------LBD16--------->At4g35610<---------ANAC46 <---------MYB52(1)      ----------->TGA1 ---   ttgtcttctccggcgaaaccgtgagatgattgccagaacacggcgtaagtccagttctcgtttgctccttcgattaaagcttggagacgttgctggagat  9935300                                                                    <------NtERF2                                                                   --------->ABI4(1)                                                                   --------->LBD16                                                                   ------>NtERF2                                                                   <---------ATERF1(1)                                                                  --------->RAP2.6(2)                                                                  --------->RAP2.3(2)                                                                  --------->RAP2.3(3)                                                                  --------->DEAR3(1)                                                                  --------->ATERF1(2)                                                                  <---------DEAR3(1)                                                                  --------->RRTF1(3)                                                                  <---------ATERF1(2)                                                                  --------->RRTF1(2)                                                                 --------->RAP2.6(1)                                                                 <------NtERF2                                                                 --------->ERF1                                                                 --------->ATERF1(1)                                                                 --------->RRTF1(1)                                                                 --------->ORA47(2)                                                                 --------->RAP2.3(1)                                                                --------->At4g35610                                                                <---------ATERF1(1)                                                                ------>NtERF2                                                                <---------RAP2.3(1)                                                                --------->DREB2C(1)                                                                <---------DEAR4(2)                                                                <---------DREB2C(1)                                                               --------->RAP2.3(3)                                                               --------->RAP2.3(2)                                                               <---------DEAR3(1)                                                               --------->DEAR3(1)                                                               --------->RAP2.6(2)                                                              --------->DEAR3(2)                                                              --------->RRTF1(1)                                                              <---------ABI4(2)                                                              --------->ORA47(2)                                                              --------->DEAR4(2)                                                              --------->MYB46(3)                                                              --------->ERF1                                                              --------->RAP2.3(1)                                                              --------->ATERF1(1)                                                              <------NtERF2                                                              --------->RAP2.6(1)                                                             --------->ZAT2                                                             --------->At4g35610                                                             --------->ABI4(2)                                                             <---------At4g35610                                                             ------>NtERF2   --------->HSFB2a(1)               <------ZmHOX2a(1)                             <---------RAP2.3(1)         <---------ANAC58            ----------->GT1         <---------ATERF1(1)         <---------ANAC58         --------->ALFIN1          --------->ARR14(2)      --------->WRKY12        ==================================HOX2a_HOX2a  <---------HSFC1(2)      --------->WRKY38(1)  =====================================HOX2a_HOX2a  <---------HSFB2a(1)      --------->WRKY45     <------ZmHOX2a(1)          --------->ATHB12--------->At4g35610     <---------MYB52(1)  --------->ALFIN1           <---------KAN4(2)--------->DEAR3(1)     --------->DOF5.7(2)<------ZmHOX2a(1) ---------->DOF2   <---------ARR14(2)                      < --------YAB1<---------TOE2(3)<------ZmHOX2a(1)    --------->YAB1--------->DEAR4(2)           ------- -------ARR11(3)      --------->ALFIN1 <------ZmHOX2a(1) ------>ZmHOX2a(2)---------->DOF2   <-------TEIL ------>ARR11(3)     <------ZmHOX2a(1) =========================HOX2a_HOX2a  --------->HSFC1(2)    <-   tatcttcgttgacttgaggaagaggaggaggaggaagtggaggaaaaagagaagaatgatcggagccgccgccgatgaaagcttccattaccgatgcatc  9935400       >>>>>>>>>>WRKY6       <---------WRKY18(1)       >>>>>>>>>>WRKY11      --------->WRKY12      ----------->HVH21      --------->WRKY45    <-------GAMYB                      <---------ANAC58                 <---------DEAR3(1)       ----    --------->At4g35610               <------MYB46(1)               <-------TEIL              <------    <---------At4g35610               <------MYB83                --------->KAN4(2)           <------   <---------DEAR3(2)                 <---------MYB46(3)         <---------KAN4(1)            <------   <---------MYB46(3)               <---------WOX13(1)     <---------ANAC58                   <------   --------->MYB55(2)             --------->ATHB12         <---------ANAC58                  <-------  <---------TOE2(2)              <---------YAB1            <---------ANAC46                 <--------  <---------DEAR3(1)    --------->ARR14(2)                 <---------ANAC55(2)             ---------- <------NtERF2          <---------ARR14(2)                --------->MYB52(2)               ---------- -----------HVH21       <-----------GT1<---------ANAC58 <---------MYB52(1)       --------->MYB52(1) >TEIL--------->WRKY38(1)    <---------MYB52(1)       ----------->GT1 <-----------HVH21<---------ZAT14 --------DEAR3(1)      <---------CCA1(2)           ------------>MYB.PH3(1)<------NtERF2--------->ZAT14   gtcgtcggttgaccagagatttgttgtatccgtttttgattggttgagatggtaatcggttacttgaacattcgtcggagacataacagttctctgacgt  9935500    ---------->DOF2                                                                          --------  <---------YAB1                                                                             <------- ------->GT1                                                                                <-------- ---ANAC58                                                         <---------AHL20(1)       <-------- ---ANAC58                                                         <---------ARR11(3) <---------WOX13(1) ---bZIP60(2)                                                      --------->AHL20(1)>>>>>>>>>ARR2 *TSS ---ANAC46                                                   --------->ANAC58       --------->ATHB12 --TOE2(3)                  --------->LBD16              <----------DOF2           <---------YAB1 --- -TGA2(2)                 <---------LBD16             --------->ARR11(3)        <<<<<<<<<<MYB80  ---- ->TGA1        <---------DAG2<-----------HVH21        <---------ARR11(3)       <------MYB83<---------LBD16 ->HVH21       <----------DOF2            <------ZmHOX2a(1)  --------->ANAC58  <------MYB46(1)-------   agttataaaagagaagactttttgtttttccggtgagagacagaggagagaagtaagttctttaagcaaaatatttgtgtttggtttgattgtttcggga  9935600   --------->GLK1(2)  <---------GLK1(2)                                                           -------->ATHB1 ->HSFB2a(2)                                                         ------>MYB83  <------------CBF --HSFB2a(2)                                                         ------>MYB46(1)<---------WOX13(1) -LBD16                                          <---------------AtSPL3       --------->ATHB12 -ANAC46                            ---------->DOF2    <----------DOF2        --------->ATHB51 ------>DAG2                    --------->ZAT6   <---------------AtSPL8      <---------ATHB51 ------>DOF2        <---------AHL20(2)    ---------->DOF2       <-----------GT1   --------->ATHB12 -->LBD16      <-------TEIL   <-----------GT1    --------------->AtSPL8      --------->ICU4   aaaggaatctgtttatattcattttttttttttaactctaaagaaaaagaaatagtacttttattttcaccaaatatgaattattgattgagttatttct  9935700              <---------MYB59             --------->ANAC55(2)             --------->ANAC46      <---------AHL20(2)                  <---------------AGL15            <-------TEIL          --------->AHL20(2)                <-----------GT1          <------ZmHOX2a(2)    ----------->GT1               <---------AHL20(2)         --------->ANAC58          --------->ARR14(2)    <------MYB83       <---------WOX13(1)     --------->YAB1 --------->ANAC58          <---------ARR14(2)    <------MYB46(1)  --------->ATHB12 <-----------GT1        --------->ANAC46          --------->GLK1(2)   --------->MYB59  <---------YAB1<---------AHL20(1)     <-----------GT1              <---------GLK1(2)   gaagttgggttatatacataacttgattgaaaacaatttttttctgaatagtaattgttttacaagaaaattactaatctatgtaagagaatcggatcaa  9935800                                                                                    ---------->ARF1                                                                                    ---------->ID1                                                                                ------>ZmHOX2a(2)                                                                              --------->ARR11(3)                                                                              <---------ARR11(3)                                                                          --------->YAB1                                                          --------->ARR11(3) --------->YAB1                              <---------ICU4              <---------ARR11(3)--------->ICU4                             <---------YAB1              --------->YAB1   <---------ICU4                          ----------->GT1          --------->YAB1        <---------ATHB51                     ---------->DOF2        ---------->DOF2              --------->ICU4       <------            <----------DOF2  --------->ICU4<---------AHL20(2)            <---------ATHB12     <------ <-----------HVH21--------->TOE2(3)        --------->AHL20(2)          --------->YAB1      <---------ALFIN1   atttgtcaaggagccttttacatcaaagttgataattaagaacaattaaagaatgaaaatgatatttcacttacaataatgatcttgtctccctcacttt  9935900                           <---------YAB1                       <---------ANAC58                                     <---------AHL20(2)                   <---------DAG2                                           --------->AHL20(2)                   <----------DOF2          <---------AHL20(2)          --------->AHL20(2)             --------->ARR14(2)             --------->AHL20(2)          <---------AHL20(2)             <---------ARR11(3)            --------->AHL20(2)       --------->WOX13(1)   <---------AtMYB61   <---------ANAC58 <--------HAHB4 --------->ANAC58--------->AHL20(2) ---DAG2     <---------ARR14(2)        <---------ATHB12--------->ANAC46<---------AHL20(2) ----DOF2    --------->ARR11(3) --------->KAN4(2)      --------->ANAC58<---------AHL20(1)   tggtattggtgtcaatatctgcttttcttgtgattaatcccatcatttaattcttgtaagcaagtagcatcaattaatttaaacaatgagtttgtagaat  9936000                                                                             <---------AHL20(2)                  <------ZmHOX2a(1)                                          --------->AHL20(2)                 --------->ANAC58                                      ----------->RAV1(1)                 --------->ANAC58                            --------->ARR11(1)                 ----------->GT1                         ---------->DOF2  --------->TOE2(3)            <---------TOE2(3)                  <---------ZAT6<---------ARR14(2)        <----------DOF2        ---------->DOF2 ----------->GT1--------->CCA1(2)                     <   <---------MYB46(3)         <---------AHL20(2)     --------->ZAT6 --------->CCA1(2)         ------- <-------GAMYB <-----------RAV1(2)       <---------TOE2(3)   --------->ARR14(2)              -------- <---------At4g35610     <---------YAB1 --------->MYB52(1)   --------->ARR11(3)    --------->ANAC46 -   tgcagttgttctttgaggcaggaaaatatgatttaaagggattaagggagtgttaacaccaaagatttggatacaacatttatatacaaaacctataaag  9936100  Previous    Next  AGI:  At4g17880.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT5G46760.1); similar to basic helix-loop-helix (bHLH) family transcription factor [Brassica oleracea] (GB:ABD65632.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 9933379    to: 9935599    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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