Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->ARR14(2)                                                           <---------ARR14(2)               <--------                                                        --------------->AGL15               ---------                                                       ----------------->AGL2               ---------                                                       ----------------->AGL3           --------->DEAR3(1)                                                    ------>MYB83                       <---------LBD16                                                    ------>MYB46(1)                <---------ARR14(2)      <----------DOF2                               -------->P                     --------->ARR14(2)   <---------ARR11(3)                             <---------MYB59                  --------->SPL7 ---------DAG2                               --------->RAP2.6(2)                  <---------CCA1(2) ----------DOF2                <---------ANAC46   <---------MYB111(1)           --------->ANAC55(2) ----MYB52(1) --------->ARR14(2)            --------------->AtSPL3              <---------ANAC55(2) --->At5g28300<---------ARR14(2)        ---------->DOF2<-----------------AGL3--------->GLK1(2) -->LBD16  <---------MYB59     <---------ANAC58  --------->HSFB2a(1)         --------->ARR14(2)  <--- ->HSFB2a(2) ------>MYB46(1)   <---------ANAC58 ------->TEIL                 <---------ARR14(2)  <--- --HSFB2a(2) ------>MYB83    <---------ARR11(3) <-----------ARR10      <---------ARR14(2) <------NtERF2 -LBD16 <-----------GT1      --------->ARR11(3)<---------ARR14(2)      --------->ARR14(2)--------->LBD16   aactttatctttaccaaatcccattgcccaatgtcttggagagaaagccgaacctactccaaatatggttccaaatccgaatccgtatcgccggagttgc  9881100                                                                                        <---------ZAT18                                                                                        --------->ZAT14                                                                                   <---------ZAT14                                                                                <-------GAMYB                                                                               <---------ANAC58                                                                               <---------ANAC46                                                                               <---------ANAC58                                                                               <---------DEAR3(1)                                                                              <------NtERF2                                   <---------HSFB2a(2)     --------->ANAC58   ------>NtERF2                                   --------->HSFC1(1)<-----------HVH21       <---------RAP2.3(1)                                   --------->HSFB2a(2)     --------->ANAC58 <---------RAP2.3(2)   <-----------RAV1(2)        <---------MYB46(3)   --------->DEAR3(2)       <---------RAP2.6(2)     <   <---------LBD16           --------->ALFIN1      --------->MYB46(3)       <---------DEAR3(1)     <- -At4g35610                 <-------MYC3         --------->MYB52(1)        <---------LBD16   -------- >GLK1(1) <-------TEIL      ------->MYC3         ------>MYB46(1)          --------->ALFIN1  --------- >At4g35610                --------->O2          ------>MYB83           <---------MYB46(3)  <-------- ------ANAC58              <---------O2        --------->AtMYB61       --------->ALFIN1 <---------ZAT14 ------ANAC58          --------->MYB46(3)      <---------MYB59        <-------GAMYB--------->ZAT14 --   cttgtccaggggttcaaaacgtctatccaacgtggttcgagaatgcagaccaaaccgtcgcaagtaaacgagggttgtgcggcgttgcagtgcagataga  9881200                                     --------->ATERF1(1)                                     <------ZmHOX2a(1)                                    <---------ATERF1(1)                                   --------->ALFIN1                              <---------LBD16                                            <----------DOF2                           <---------ARR14(2)                   <-------GAMYB       <-----------GT1 ------>ZmHOX2a(2)        ------>NtERF2                --------->LBD16          <---------ARR14(2) ------ZmHOX2a(2)        --------->MYB46(3)           --------->RAP2.6(2)       --------->ARR14(2) --------ARR11(3)        --------->DEAR3(1)           --------->RAP2.3(2)       --------->ARR11(3) ->CCA1(2)      --------->ZAT14--------->LBD16      --------->ZAT2              <---------ARR11(3) >ARR14(2)      <---------ZAT14<---------LBD16      <---------ZAT2             <------ZmHOX2a(1) -ARR14(2)   <----------DOF2 <---------LBD16        --------->At4g35610--------->At4g35610 ------->ARR11(3)        ----------->HVH21         --------->ANAC46    <---------At4g35610  <--------   cgatctcttcgttccctttgcactgcgacgacccggggaggagcctaggctcccagccgcatttgcagttgtaagcagccaggattttgcgcttcttttg  9881300                    ------->TEIL                 --------->ANAC58                 <---------MYB52(2)                 --------->ANAC58          ------>ZmHOX2a(2)         --------->CCA1(2)           <---                 --------->ANAC46        <---------ARR11(3)   <----------DOF2    --------->GLK1(1) --DOF2  <---------CCA1(2)               --------->ARR11(3)   <---------DAG2     <---------GLK1(1)   aagactcattcgtctctccacgaacgtcttcgactcaagaattgatctccatcgttttgagacgcttttcgatatgagaatggatttcaagggaagtcga  9881400                   ------>ZmHOX2a(2)                  <------ZmHOX2a(2)                 --------->ARR11(3)                 <---------ARR11(3)                 <---------ARR14(2)           <---------HSFC1(1)           --------->HSFB2a(2)           --------->HSFC1(1)           <---------HSFB2a(2)     <---------ARR11(3)     --------->ARR11(3)    <---------CCA1(2)   <---------ARR11(3)   --------->ARR11(3)                                                                               <   <---------AHL20(1)                           <-----------GT1                                   --- ------TOE1(2)   --------->ARR14(2)       <---------TOE2(3) ------>ZmHOX2a(1)<---------MYB52(1) -----   aggaatatatcttctagaagatcggcaactatgtagatcgaactagggtttttctcttcttcctccattcttggtgactgtttgttttttgattttttgt  9881500                                                <------------CBF                                               --------->ATHB12                                              <---------YAB1                                              ------>ZmHOX2a(1)                                             --------->TOE2(3)                                            ----------------->AGL1                                      --------->ARR11(3)                                      <---------ARR11(3)                                      --------->AHL20(1)                                      <---------AHL20(2)                                      --------->AHL20(2)              --------->HSFC1(2)      <---------AHL20(1)  <----------DOF2                <---------AHL20(2) ---------ATHB12         <---------WOX13(1)<-----------------AGL1   <---------AHL20(2) ------>WOX13(1)        <------------CBF  <-----------GT1           <---------YAB1          <-------- ------->CBF  <---------HSFC1(2) --------->AHL20(2)        ----------->GT1    ----------->GT1   caatctttctgttagaaacatcgagagattgacattttaatatatttccttattggcaaataggtgaatttttattaaacttgtgaatcaagttatgttt  9881600                                                                   ------------>CBF                                                  <---------AHL20(1)                                                  --------->AHL20(1)               <---------MYB46(3)                                                  --------->ARR11(3)    <--------ATHB1                                                  <---------ARR11(3)    --------->YAB1                                      <---------RVE1(1)      <---------AHL20(2)   <---------YAB1                                      <---------CCA1(1)     <---------AHL20(2)  ----------->GT1                   --------->AHL20(2)<---------ARR11(3)     --------->AHL20(2)  --------->YAB1            <------------CBF         --------->ARR11(3) <---------YAB1 <---------ATHB51            >>>>>>>>>ARR2          <---------TOE2(2)  ----------->GT1  --------->ICU4              <- -YAB1     --------->ATHB12        <---------TOE1(2)<------------CBF   <---------ATHB12------------>CBF   ccatagagttgtttgattgtataaattagactgctcgtagatatttatccaaaatattgttattaaatgggcaataatagaatggtgattacaatgtgtt  9881700                   ------>MYB83              ------>MYB46(1)            --------->AtMYB61            ------->GAMYB            <---------MYB59           --------->MYB46(3)                         --------->ANAC46          --------->ANAC58                            --------->ANAC58          --------->ANAC58                      <----------DOF2                    --------->AHL20(2)         ------->GAMYB  <----------ID1         <---------------AGL15               <---------AHL20(2)        <---------MYB55(2)                     --------------->AGL15              --------->AHL20(2)        --------->MYB46(3)                    ----------------->AGL1 --------->TOE2(3)        <---------MYB111(2)                --------->GLK1(1)         --------->TOE1(3)     --------->ANAC46 --------->YAB1       <---------GLK1(1)         <----------DOF2   --------->YAB1   --------->ANAC46------>MYB46(1)        <---------ICU4--------->AHL20(2) <---------ATHB12  -------- ---------DOF2------>MYB83             --------->YAB1 --------->ANAC58 --------->AHL20(2)--------->MYB46(3)   tctttacacaacaaccaaaccaaataagaacaaattacaaataagaattcctttacaagaaaatatacaaactttaaatcaatatttaataacaaacaaa  9881800                                                                                                    <                                                                                           ----------                                                                                           ----------                                                                                         <---------At4g35610                           ------->TEIL                                                  --------->O2                    <----------DOF2                                                      <---------ANAC55(2)                  <---------YAB1                                                         --------->ANAC55(2)                 <-----------ARR10                                                       <---------O2                 <---------ARR11(3)                    --------->ANAC46                  --------->TGA1a                 <---------ARR14(2)                 --------->ARR14(2)                 <-----------RAV1(2)                 --------->ARR11(3)                 <---------ARR14(2)              ----------->HVH21                <---------CCA1(2)              <---------YAB1             --------->ARR14(2)       -- ->YAB1         --------->GLK1(1)    <----------DOF2<---------ZAT14       --------->AGP1 --------->At4g35610   attaagagtattaatcgaatatctttgtgtatgtattgtctttaaaactatgagtatacgacccgaacaaaatccagttctaccatgggacaggtgacga  9881900            --------->At4g35610                                                           --------->ARR11(3)      <---------ANAC46                                                            --------->LBD16      <---------bZIP60(1)                                                        <---------ANAC46   ----------->HVH21                                                            <---------LBD16 -----   ----------->TGA1                                         --------->YAB1  <---------ICU4<---------AGP1 ---------MYB46(3)                             --------->TOE2(3)      --------->TOE2(3)   <---------ARR11(3) ->TGA1     <---------At4g35610     ----------->GT1    <---------AHL20(2)  <---------ATHB12 ------>ZmHOX2a(2) ->HVH21<---------MYB52(1)       --------->GLK1(2)     --------->AHL20(2)--------->WOX13(1)<------ZmHOX2a(2) ------->ALFIN1       ----------->GT1          --------->TOE1(3)      --------->YAB1      --------->AGP1   tgtgggtgacgttaagctgcagattagataaaacaattctgttaataaaccataaatataaatcatatactatgttaatcaatgcggagatagatcttac  9882000  Previous    Next  AGI:  At4g17780.1    Description:  F-box family protein. Identical to Putative F-box protein At4g17780 [Arabidopsis Thaliana] (GB:Q3E9Z8;GB:O23618); similar to F-box family protein / S locus-related [Arabidopsis thaliana] (TAIR:AT2G43260.1); similar to F-box domain containing protein [Brassica oleracea] (GB:ABD65166.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 9880334    to: 9881468    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g17785.1    Description:  MYB39 (MYB DOMAIN PROTEIN 39); DNA binding / transcription factor. Identical to Transcription factor MYB39 (MYB39) [Arabidopsis Thaliana] (GB:Q8GWP0;GB:O23618;GB:Q9SPG8); similar to MYB107 (myb domain protein 107), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G02940.1); similar to myb family transcription factor [Brassica oleracea] (GB:ABD65628.1); contains InterPro domain Myb transcription factor (InterPro:IPR015495); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contai Range:  from: 9881648    to: 9883445    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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