Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             --------->ARR14(2)                           <---------ARR14(2)                         --------->LBD16                        <---------ANAC46                                          --------->ANAC58                        <------NtERF2                               <---------PCF2--------->ANAC58              --------->RVE1(1)                                     --------->TCP20  <---------ANAC46             --------->ARR11(3)                                     --------->TCP15(1)             <---------ARR11(3)                                  --------->ALFIN1 --------->ANAC46             --------->GLK1(2)                        ---------->DOF2 <---------At4g35610 --------->DOF2        <------NtERF2                 --------->AHL20(2)<---------MYB59 -ID1---------->DOF2<-----------HVH21        ----------->GT1  --------->DAG2   <-----------GT1 ->GT1 ----------->GT1 <---------LBD16     ----------->GT1   ---------->DOF2*TSS<-----------GT1   atcaaaggaaagaaaaatctctggtcgcggatttgatgtgaagaagagtgaaaaataaaagaaaaaagtgggacctgattttaaacgccttggaaaaacg  9864700                                                <---------YAB1                                          <-------MYC3                                          <-------MYC2                                          ------->PIF4                                          <-------PIF4                                          --------->TOE1(2)                                          ------->MYC3                   ----------->HVH21      ------->MYC2                  <-------PIF5            ------->MYC4                  ------->MYC2            <-------MYC4                  <-------MYC4            ------->PIF5                  ------->MYC4            <-------PIF5                  ------->PIF5           <---------ANAC58                  <-------MYC2           <---------ANAC55(2)                  <-------MYC3           --------->ANAC55(2)                  <-------PIF4           --------->O2                  ------->PIF4           <---------O2                  ------->MYC3 --------->ARR14(2)                 <---------O2  <---------ARR14(2)--------->ATHB12                 --------->TGA1a         <---------ANAC58                 --------->O2<---------DEAR3(2) --------->ICU4                 --------->bZIP60(2)     <---------TGA1a                 <---------TGA1a --------->HSFB2a(1)                 --------->ANAC58<---------HSFC1(2)                 ==================================================bZIP_DOF                 <--------                 --------->ANAC58--------->HSFC1(2)              ------>ZmHOX2a(1)          ---------                 ----------->GT1 <---------HSFB2a(1)--------->AHL20(2)               <----------DOF2                 <---------ANAC55(2)     ==========================bZIP_DOF         <---------ANAC58                 --------->ANAC55(2)     ==========================bZIP_DOF         <---------ANAC58               <------------OsbHLH66     --------->TGA1a---------->DOF2  <-----------GT1  ---------->ID1          --------->ALFIN1  --------->ETT(1)<---------------------WRI1  <-----------GT1  <-----------GT1     <---------LBD16  --------->CCA1(2) ------------>OsbHLH66   <---------MYB59<----------DOF2<------   agtcttattcgggtttggcacgtgatatggtcggaaccttctcacgtgcgatgattaaaaaagagtcctaattttaaacttcttttgcttttgacccttt  9864800        --------->DAG2       ---------->DOF2                                                                           <---    --------->O2                                                                                 ----    --------->ANAC55(1)                                                              <---------MYB52(1)    --------->ANAC58                  --------->GLK1(2)                             --------->LBD16    --------->ANAC58               <---------AHL20(2)                              --------->ANAC46    <---------ANAC46               --------->AHL20(2)         ------>ZmHOX2a(1)    --------->ANAC55(2)    --------->ANAC55(2)           --------->AHL20(2)         --------->TOE1(3)     <---------ANAC55(2)    <---------ANAC55(2)         --------->TOE2(3)            --------->TOE2(3)     --------->TOE2(3) -------AGL15             <---------AHL20(2)          --------->YAB1          <---------AHL20(2) <--- ------>AGL15          --------->ARR11(3)            <---------YAB1           --------->AHL20(2) ---- ----DOF2              <---------ARR11(3)          --------->WOX13(1)     <---------YAB1    <--------   ttagtcacgtaaagttctatctagagattttattcattaaattctggactaatctatcataatccttaatctaattctaattaatccgtaatctgttagt  9864900                                                                         --------->ZAT2                                                                         <---------ZAT2                                                                         <---------At4g35610                                                                ------->PIF5                                                                ------->MYC2                                                                <-------MYC4                                                                ------->MYC4                                                                <-------MYC3                                                                <-------PIF5                                                               <---------O2                                                               --------->ANAC46                                                               --------->ANAC55(2)                               --------->ICU4                  ========================MYC_MYB                             <---------TGA2(1)                 --------->O2                    <---------TOE2(3)                          <---------TGA1a              --------->AHL20(2)<---------ICU4                 --------->TGA1a        --------->YAB1       --------->bZIP60(1)             <---------ALFIN1             --------->YAB1      --------->AHL20(2)     <---------bZIP60(1)             <------------OsbHLH66        <---------ICU4  ----------->GT1  --------->MYB52(1)          --------->AtMYB61<-------MYC2             --------->ICU4 ------ARR14(2)    <---------DOF5.7(2)<----------DOF2      ------>MYB46(1)               <---------ATHB12 ----->ARR14(2)    <-----------GT1    <---------DAG2       ------>MYB83  --------->At4g35610 ------ARR11(3)  <---------MYB52(2)   ===================================bZIP_DOF ------------------- ----->ARR11(3)--------->WOX13(1)  <-----------GT1   <---------ETT(2) ------>ZmHOX2a(1)  <---------YAB1 -MYB52(1) --------->YAB1 ----------->HVH21   --------->MYB46(3)------->MYC3---------->CDC5   atcttggttaaaataatcaattaacgtcgtgacataatcactttctccaccaatgtctaccatccacgtgtcctgagctcagagcaatgtaatcatcgta  9865000                                         --------->GLK1(2)                                        <---------GLK1(2)                                      <---------TOE1(3)                                      <---------TOE2(3)                                      <---------YAB1                                   <---------MYB52(1)                                  <-------GAMYB                            <----------TaMYB80                            --------->CCA1(2)                            <---------GLK1(1)                           ---------->TaMYB80                           <---------ARR14(2)                         <---------YAB1                   ==================================================bZIP_DOF                   ---------->DOF2===================================MYC_MYB               --------->YAB1  <---------At5g28300                   --------->AHL20(2) <------ZmHOX2a(2)              <---------YAB1--------->GLK1(1)              <---------ANAC55(2)        <------ZmHOX2a(1)          <----------DOF2  <---------ARR11(3)              --------->TGA1a          <---------TOE1(3)       <-----------GT1     --------->ARR11(3)              --------->O2             <---------TOE2(3)     <-----------GT1       --------->ARR14(2)              =============================bZIP_DOF    --------->YAB1<---------AHL20(2)  ----------->ARR10    <---------TGA1a    --------->DAG2 -->WRI1  <---------DAG2  <------ZmHOX2a(1)                <---------O2      ---------->DOF2    -----   gaccatttatcactttataataaaaggaggatataccgttaagattctaaactatagagtcacgtttggaatattatagaaaagttaaggatcaaaaaat  9865100                     <-------TEIL                                           --------->ANAC55(2)                  <---------ANAC58                                        <---------DOF5.7(2)            <---------DAG2                                               <-------TEIL         --------->ANAC58                                             <---------MYB46(3)         --------->ANAC58                                            <---------DEAR3(1)         -----  --------->DAG2  <---------ANAC58 ----------->HVH21                --------->LBD16           <------  <---------------AtSPL8         ----------->GT1                    ------>NtERF2           <-------- ---------->DOF2*TSS<---------MYB52(1)     <-----------GT1          <---------LBD16 <-----------GT1 ------>GT1 <----------DOF2 --------->ANAC46 --------->ANAC55(2)  <---------LBD16 <-----------GT1   gaaaaaagtacaagctttttccgttcatacaggtaatgtgacatttcacgttttgctcaatctctctctccgcggttcacgttttttctcaatctgtccg  9865200                    --------->GLK1(2)                                  --------->At5g28300                    <---------ARR14(2)                                ----------->GT1                    --------->ARR14(2)                          <---------DOF5.7(2)                   --------->GLK1(1)                          --------->DOF5.7(2)            <-------                --------->LBD16                               <---------MYB52(1)             --------               --------->LBD16                           ------>ZmHOX2a(2)                  <--------               <---------LBD16             ------>ZmHOX2a(1) <-------GAMYB                  <--------       <-----------ARR10                   =====================HOX2a_HOX2a            <---------REM1(1) ---->LBD16   <---------LBD16     <-----------HVH21     <---------GLK1(1)              <-----------RAV1(1) ---LBD16    <---------LBD16     --------->AtMYB61     <---------ARR11(3)              <---------MYB46(3) ---HVH21   --------->MYB52(1)<-----------GT1          --------->ARR14(2)           <-----------RAV1(1)   gagagagagaaactcaccggggaatcttgaaatcaccatcacatcctctcttccctcgatctccgttatcgactgtaaatcgaattttgttgttgctttg  9865300                                             ---------->DOF2                                          <---------HSFB2a(2)                                          <---------HSFC1(1)                                          --------->HSFB2a(2)                                   <----                                  <------NtERF2                                     <------NtERF2----                                <---------ANAC58                                   --------->LBD16 <---------ANAC58               <---------ANAC58                                  <---------ANAC46 <---------ANAC58               <---------ANAC46                                 <---------LBD16<---- ---DOF2                        <---------DEAR3(1)                               <------------------- ------------->WRI1<------ZmHOX2a(1)      --------->HSFC1(1)              --------->CCA1(2)    ------ -ANAC58          ----------->GT1--------->LBD16                         <---------ARR11(3)    <----- -ANAC58     ---------->DOF2   <---------LBD16         ---------->DOF2   --------->ARR11(3)<------ZmHOX2a(1)   ttttcttgggcgaataaaagaggataatttagtggcggggttttcgagaaagagagagaaagaatgagttttcaagatttagaggcgggaagaggaagat  9865400                                                       <-----------RAV1(1)                                                       <---------REM1(1)                                                      --------->ARR11(3)           --------->ANAC58             --------->ANAC58           --------->ANAC46             --------->ANAC46    <---------ANAC46 -----YAB1 --------->ANAC58  <---------MYB46(3)       <---------ARR11(3)      <------ZmHOX2a(2) ----->ATHB12               <---------AtMYB61--------->ANAC58                --------->AGP1 --ZmHOX2a(2)             <---------MYB46(3) --------->ANAC58   <---------HSFB2a(2) ----TaNAC69(2)          <---------AtMYB61   --------->ANAC46   --------->HSFB2a(2)        <--------- --->ARR11(3)            --------->ALFIN1    --------->O2   <---------ANAC58--------->At4g35610 ----ARR11(3)    --------->TOE2(3)      --------->ANAC58    <---------ANAC58<---------At4g35610  <---   cattagcttcttcaaggaacatcaatggtggtggtagtagacaagacacgactcaagatgttgcttctggtatatttcagatcaatacaagtgtttccac  9865500                                             --------->At4g35610                                             <---------ZAT2                                             --------->ZAT2                                        ----------->RAV1(2)                                      --------->ANAC58                                      --------->ANAC58                                     <-------TEIL                                    --------->ARR14(1)                                    --------->CCA1(2)                                   <---------ARR14(2)                           <---------TOE2(3)                                   --------->ARR11(1)                           <---------TOE1(3)                                   --------->ARR14(2)                          ---------->DOF2                                   <---------GLK1(2)                   <---------HSFB2a(2)                               ---------->DOF2           --------->At4g35610   <---------DOF5.7(2) --GT1                        ------>ZmHOX2a(1)         --------->GLK1(2)---------->DOF2   <---------DAG2 -------DOF2         --------------->AtSPL8  <---------At4g35610       --------->HSFB2a(2) <---------   tttccatcgtcttgtcaatactcttggtactcctaaagatacgcctgagctcagagagaagctgtaagtacttctcaaagttaaagttatctcctttttg  9865600  Previous    Next  AGI:  At4g17720.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G46870.1); similar to RNA recognition motif (RRM)-containing protein [Brassica oleracea] (GB:ABD65158.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 9862459    to: 9864676    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g17730.1    Description:  SYP23 (syntaxin 23); SNAP receptor. Identical to Syntaxin-23 (SYP23) [Arabidopsis Thaliana] (GB:O04378;GB:O23613); similar to VAM3 (syntaxin 22), SNAP receptor [Arabidopsis thaliana] (TAIR:AT5G46860.1); similar to syntaxin, putative [Brassica oleracea] (GB:ABD65611.1); contains InterPro domain Target SNARE coiled-coil region (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain Syntaxin/epimorphin, conserved site; (InterPro:IPR006012); contains InterPro domain t-SNARE; (InterPro:IPR010989) Range:  from: 9865116    to: 9867035    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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