Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                <---------AHL20(2)                                                         <---------ZAT6                                                         ----------->GT1                           <---------ARR11(3)          --------->YAB1                 <---------LBD16                           --------->ARR11(3)       --------->YAB1               <---------DAG2                          --------->YAB1        <---------RVE1(1)                --------->TOE2(3)                      <---------AHL20(2)        <---------CCA1(1)     <---------RVE1(1)                     <---------AHL20(2)        --------->ARR11(3)     <---------CCA1(1)        ------               ----------->GT1  <-----------GT1--------->AHL20(1)    --------->ARR11(3) --------->LBD16               --------->YAB1 <---------YAB1   <---------ARR11(3)    <---------ARR11(3)--------->ANAC46     --------->YAB1  --------->AHL20(2)    ---------->DOF2   --------->AHL20(2)  --------->TOE1(3)   tgtccaaacataaactatagtaattaaatgatattatcgatattcaaaagatattaatagtgataaaattagatatttgaaaaccttatgcgcaaaaact  9861600                                                                                                    -                                                                                                    <                                                                                                   --                                                                                                   <-                                                                                                   ==                                                                                                   <-                                                                                                   --                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 ----               <------MYB83                                                                    ------         --------->TOE1(2)                                                                     ------  --------->AHL20(2)                             --------->YAB1          --------->AtLEC2      <-----  <---------AHL20(2)                            <-------TEIL           <---------ANAC58      -------- <---------AHL20(2)                            --------->AtLEC2        <---------ANAC58   --------->ATERF1(1) <---------AHL20(1)                         <-------TEIL         <----------DOF2         --------->ANAC46 --------->AHL20(2)      ----------->GT1   --------->CCA1(2)    <---------DAG2    <---------WRKY38(1) --->TOE2(3)   <------MYB46(1)          <---------TOE2(3)    <-----------GT1   --------->YAB1<------NtERF2   taataaaattacatgggaggtttgtaagagtaacaatggtttaagatacatgcataaacaatttcaccttttgccttgcaatagtcaatgcaggcagcca  9861700     <---------WOX13(1)   <---------ICU4   --------->ATHB51   --------->ATHB12  <---------YAB1                                                                     <---------ANAC58  --------->ICU4                                                                     <---------ANAC58 -------------->AGL15                                                                <---------ANAC46 ---------------AGL15                                                           --------->MYB52(1) --------------->AGL2                                                           ------>MYB46(1) ----------------AGL3                                                           ------>MYB83 =================================================MADS_MADS                   <---------MYB55(2) ----------------AGL1                                                         --------->MYB46(3) --------------->AGL3                                 --------->MYB55(1)      --------->AtMYB61 ----->bZIP60(2)                                      ------->GAMYB         ------>NtERF2 ----->ANAC58                                        <---------MYB111(1)  --------->ATERF1(1) ------ALFIN1                        ---------->DOF2 <---------MYB55(2)  <---------ATERF1(1) ----->ANAC46                     <----------DOF2    <---------MYB111(2) --------->TCP16(2) ----->ANAC58                     <---------------AGL15-------->P       --------->PCF2 ----->RAV1(1)                    --------------->AGL15--------->MYB52(1)------>NtERF2 --->RAP2.6(2)                 --------->ARR11(3)    --------->MYB46(3) <---------TCP16(1) ----ALFIN1<---------YAB1      <---------ARR11(3)    <---------MYB52(2) <---------PCF5<-------GAMYB ->At4g35610               --------->ICU4       --------->YAB1         <-----------TCP11(1)   caccataattggtatcattcggtaatgtcatgagttctttaaaggggcattcacaactaccgctaatacatttggggccaccaaatggcgttggacattt  9861800                                   --------->ARR14(2)                                --------->ANAC55(2)                                <---------ANAC55(2)                               <-------TEIL                              --------->CCA1(2)                             <---------ARR11(3)                           --------->ANAC58       --------->ICU4      <---------ICU4    --------->HSFB2a(2)                       --------->AtLEC2    <---------ANAC58   --------->TOE1(2)         <---------HSFB2a(2)               --------->ARR14(2)  <---------ARR14(2)   --------------->AtSPL8    --------->ATHB12           --------->YAB1  --------->ANAC58<---------ANAC58 ------->TEIL         --------->ICU4     -   gagtttaacacagtcagaattcgtcttgcaagatacatatccagttcgtgccataatcgatgtacctgctaaaaatcaccgaaatgatttatagaaacgc  9861900            <------ZmHOX2a(1)                                                              <---------ZAT2            --------->YAB1                                                                 --------->At4g35610          <---------TOE2(3)                                                                --------->ZAT2     <---------YAB1                --------->AHL20(2)              ----------->GT1         <---------At4g35610   <---------bZIP60(1)     <---------------AtSPL8                 --------->DAG2        ---------->DOF2   --------->bZIP60(1) <---------YAB1                            ---------->DOF2      <---------YAB1 ---------->HVH21<---------YAB1<-------TEIL                 ----------->GT1        ------->TEIL   tcatgacatgataaggatgatgaatacaattggtacataaatttagttgtgaaactcacatgttgaaaaaagtagaataccgatgaatatcaaagctgac  9862000                                                                                     <------------CBF                                                                                   --------->AHL20(2)                   <----------DOF2                                                 <---------YAB1               --------->ZAT14                <---------ANAC58                     <---------AHL20(2)               <---------ZAT18                <---------ANAC58                  <---------ARR11(3)               <---------ZAT14            <------------CBF      <---------ANAC46--------->AHL20(1)           --------------->AtSPL8     <---------YAB1      <---------TOE2(3)     <---------AHL20(1)         <-----------GT1           --------->ICU4       --------->YAB1     ------------>CBF      <---------AHL20(2)        <---------AHL20(2) ------------>CBF       --------->ANAC46          <   ttctccatttttttctgtgctcttttctatttgtataattttgatattgtttgcacaattaagatgatgtgtttacaaacaatatataattgtgagaaaa  9862100                                                                         <---------ANAC46                                                                         <---------ANAC58                                                                         <---------ANAC58                                                                <---------YAB1                                                            <---------AHL20(1)                                                            --------->ARR11(3)                                                            --------->AHL20(1)                      <             <----------DOF2                              <---------AHL20(1)                <--------          ---------->ID1   --------->AHL20(2)             --------->AHL20(1)             <---------ARR11(3)      <----------DOF2  <---------YAB1              XXXXXXXXXXXXXXXXXXXXX>MIR447A/B       --------->ARR11(3) ------------CBF  <-----------GT1     <----------DOF2     <---------ARR11(3)  <-----------GT1      <-   cgaattgtctttttccttttataccatgaataaatctgttcttttttcacttgagaacaaaatattttgataaatgcgtttaactggtcgagattttatt  9862200                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    <                                                                                --------->YAB1      -                         <-------TEIL                                           <---------ICU4  <----                     <---------AHL20(1)                               <---------ARR11(3)--------->ARR11(3)                     <---------ARR11(3)<---------WOX13(1)      ----------->GT1 <---------YAB1   ===== ---------MYB52(1)  ----------->TBP   <------------CBF    ---------->DOF2    --------->YAB1    ------ -AHL20(2)  <<<<<<<<<<<<WRKY18    --------->TOE2(3)      <---------AHL20(2) <---------YAB1     <----- ---------DOF2  ------------>CBF<---------YAB1   <----------DOF2      --------->ARR11(3)<---------ARR11(3)   cctttagttttgtcaaatgtcaatatatacatttattcttaattgatacttctttgaatttaaagtgcttaaaatcttcttataattagagttcttagat  9862300           --------->ARR14(2)           <---------ARR14(2)    ---------->DOF2 --------->ORA47(1) ----------->RAV1(1) -------->At1g77200 -------->DEAR4(1) -------->DREB2C(2) ---------ETT(1)<-----------HVH21                             <---------ANAC55(2) -------->DEAR3(1)                                   <----------DOF2       --------->MYB52(1) --ZmHOX2a(2)  ------>ZmHOX2a(1)                  <-----------GT1       <---------ANAC55(2) =====================HOX2a_HOX2a              --------->MYB52(2)       --------->ANAC55(2)    ------ --->ARR11(3)<---------ANAC58                  <---------MYB46(3)--------->AHL20(2)  <---------WOX13(1) ----ARR11(3)<---------ANAC58           <----------DOF2      <-------TEIL ----------->HVH21   <------   caccgacaaagcgtttcctgtcaaatgtgtttgtaacatctactttggtttgttactttcagttacataaaatcacttgacgggctaattgctctaatca  9862400                                                   --------->ATHB12                                                   <---------ICU4                                                  <---------YAB1                                                  --------->ICU4                                                --------->YAB1                                        <---------MYB52(1)                           <---------MYB52(1)  --------->ICU4                         ------>ZmHOX2a(2)     <---------YAB1                            <----------ID1               --------->YAB1          <---------At4g35610<---------LBD16             ---------->DOF2 --->YAB1     --------->AHL20(2) <------MYB83--------->YAB1 ----------->GT1 <---------TOE2(3) ---ATHB12--------->AHL20(2)     <------MYB46(1)<---------ICU4  --------->AHL20(2) <----------ID1   aatttttgattttaaaataaaaatcgatcggtatttggttcagttaaccatgatgattagcccggtttaaataagtttaagaaaaacgaaaagaacaaaa  9862500  Previous    Next  AGI:  At4g17718.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06166.1); similar to hypothetical protein 40.t00037 [Brassica oleracea] (GB:ABD65155.1) Range:  from: 9861609    to: 9862008    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g17720.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G46870.1); similar to RNA recognition motif (RRM)-containing protein [Brassica oleracea] (GB:ABD65158.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 9862459    to: 9864676    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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