Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->YAB1                                                           --------->ANAC46          <---------ATHB12                                                         <---------LBD16   --------->ARR14(2)           <---------YAB1                                   --------->ARR14(2)   <---------ARR14(2)  --------->HSFB2a(1)                                     <---------YAB1  <---------CCA1(2)    --------->HSFC1(2)             --------->ANAC58       --------->YAB1  --------->GLK1(1)    <---------HSFC1(2)             --------->ANAC46      --------->ICU4   --------  <---------GLK1(1)    --------->MYB46(3)             --------->ANAC58      <---------YAB1----------- -------->YAB1        ------->TEIL                  <---------ALFIN1      <---------ICU4--------->At4g35610 --------GT1       --------->ANAC46                <---------REM1(2) --------->ANAC58--------->LBD16 ------AGL15       --------->ANAC58        <-----------GT1           --------->ANAC58--------->At4g35610 ----->AGL15       --------->ANAC58     <---------KAN4(2)     --------->At4g35610<---------ARR14(2)   aagcatatccaaatcatatgcacgaaccatcttcatcaatggaataaacactctccacacaaatagctgcaacgcattatgattatccgcagcaacaaag  9814500                       <---------AHL20(2)                       --------->AHL20(2)                    --------->WOX13(1)<---------ATHB12                ------->GAMYB --------->GLK1(2)            >>>>>>>>>RAP2.2 -->DOF2--------->TOE2(3)<-----------GT1       --------->ANAC46                 <---------MYB52(2)  - >RAV1(1)      --------->MYB46(3)     --------->ICU4    <---------CCA1(2)  ----------->GT1   <-------   cctgcttcaacctcataaccatcaattaaacaattctgtaatcactaacacatcatacatatctaaaaattcaaaattggtaactcaccaaaattcttta  9814600                  --------->MYB46(3)                 ------>NtERF2               --------->YAB1                --------->RAP2.6(2)         --------->At4g35610                 ------>ZmHOX2a(1)               <---------MYB55(2)         <---------ICU4                    <---------ARR14(2)               --------->MYB46(3)         --------->YAB1                    --------->ARR14(2)             --------->ANAC46     <-------GAMYB                            <---------ARR14(1)             --------->ANAC58    <---------MYB46(3)                        <---------CCA1(2)      ---------->DOF2    ------->TEIL    --------->ICU4                 --------------->AtSPL8  ----------->HVH21   <---------ATHB12   <---------ATHB12              <---------At5g28300 -------->At4g35610--------->AtMYB61   --------->WOX13(1)     ---------->ID1<---------ARR11(1) ---DOF2     --------->ANAC58 <-----------RAV1(1)    <---------CCA1(2)<-----------GT1             <--   gtagatgacaaagcccagccaccaatgaagctatgtggttgcaatcatcagaatcaaatctcttgtccccatttaccgtatcctattcaaaaacatgttc  9814700                                                          <---------ICU4                                                          --------->YAB1                                                         <---------ATHB12                                                       --------->WOX13(1)        --------->GLK1(1)                                   --------->ALFIN1  <---------ATHB12       --------->DAG2    <---------AHL20(2)       ----------------->AGL1 ------>MYB83           --------->DAG2         <-- --------->TOE2(3)  --------->ANAC58                ------>MYB46(1)       ---------->DOF2        ---- --------->TOE1(3)  --------->ANAC58           <-----------GT1         --------->ANAC46          ---- -------CCA1(2)   --------->LBD16  ----------->GT1 --------->WOX13(1)  <----------ID1           -----   aaatcttaaattgaacaatccgaagcaaattgccgaagtgtgaaacaataaaccaatcaatcaatacctctaaacgaaaagggaattgctcaatgagaga  9814800                              --------->At4g35610                              <---------At4g35610                          --------->ALFIN1                      ----------->RAV1(2)                    --------->ANAC58                    --------->ANAC58                   <-------TEIL                                         <---------ARR14(2)                  --------->CCA1(2)                              <---------ANAC46                  --------->ARR14(1)                         --------->At4g35610                 --------->ARR11(1)                     <------ZmHOX2a(1)     <---------ANAC46  ---------->DOF2--------->ARR14(2)              ---------->DOF2--------->ZAT2<---------ANAC58 -----TEIL       <---------ARR14(2)           --------->ANAC58  <---------ZAT2<---------ANAC58 ----->GLK1(2)  <---------GLK1(1)             --------->ANAC58  --------->At4g35610       ----------- ----->CCA1(2) ----------->ARR10           --------->WRKY18(1)  <---------At4g35610 --------->At4g35610 ---->ARR11(1)<------ZmHOX2a(1)           <-----------HVH21  <---------At4g35610    <---------At4g35610   ttcgaaaagagttgaaggagatacgcctgtggagcttaaaacacagtcaaggaaagcaggaatagctgctggtggaacttgcttgaagctcagtgacaat  9814900                                                           --------->At4g35610                                                           <---------At4g35610                                                           --------->ZAT2                                                           <---------ZAT2                                                          --------->ANAC58                                                          --------->ANAC46                                                          --------->ANAC58                                                       <------NtERF2                      ------->TEIL                                              --------->AHL20(2)                     <---------DOF5.7(2)                                              --------->AHL20(1)                   --------->DOF5.7(2)                                              <---------AHL20(2)                  --------->TOE2(3)                        <------------CBF     --------->AHL20(2)                  --------->ANAC58  <-              ------->TEIL    --------->HSFC1(2)    --------->At4g35610          --------->ANAC58 --- >HVH21 ----------->HVH21     <---------HSFC1(2)<------------CBF                 <---------ANAC55(2)   gaagtaatcactgacgaacccatttcaattgaagcttcgaacttcaaaaaaattggctgcaagcagccagaatagatgaagaaacgtaaacgaatttgaa  9815000                         --------->GLK1(2)                        <---------GLK1(2)                    <---------ANAC58                        --------->ARR14(2)                   <---------ANAC46                        <---------ARR14(2)        --------->AHL20(2)                       <------ZmHOX2a(1)         <---------ATHB12                   <---------ANAC46              --------->AHL20(2)   <---------ZAT14 <---------TOE2(1)             <---------AHL20(2)  ----------->GT1   --------->ZAT14 <---------TOE1(1)             <---------ATHB51 <------ZmHOX2a(1)              ---- --------ICU4 --------->ALFIN1            <----------DOF2    <---------ANAC58          <---------YAB1 ------>ICU4  <---------ZAT6         <-----------GT1    <---------AtLEC2     --------->TOE2(3)  -----   attagtacagagggaagtgttacgaggaatctctctgttaaaccctttcaaataattttcatggcttaggacagataaaccctagtcgtataattagggg  9815100         -------->ATHB1         --------->ATHB51         --------->ATHB12                            <---------SPL7        <---------YAB1    <XXXXXXXXXXXXXXXXXXXXMIR1887        --------->ICU4   <---------ANAC58     <---------WOX13(1)           ----------->GT1   --------->YAB1        <---------ANAC58   --------->ATHB12           <------ZmHOX2a(1)      ------- ------->GT1          <----------DOF2      <---------YAB1             --------->LBD16       <-------- ------>GT1  --------->YAB1     <----------DOF2     <---------ANAC46<-----------RAV1(2)    --------->MYB52(1)   ggaaattagaattattgataagggctttcttgggcttaacttagtatgattgggccgtatgggatagacttcaggagaagaaaaaaaaaaaaaaaccgga  9815200                                          <xxxxxxxxxxxxxxxxsmallRNA(i)                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                       <---------HSFC1(2)                                       --------->HSFB2a(1)                                       --------->HSFC1(2)                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                       <---------HSFB2a(1)                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                      <xxxxxxxxxxxxxxxxsmallRNA(le3)                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                   <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   <xxxxxxxxxxxxxxxsmallRNA(si3)                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                  --------->ANAC46                                  --------->ANAC58                                  --------->ANAC55(1)                                  --------->ANAC55(2)                                  <---------ANAC55(2)                                  <xxxxxxxxxxxxxxxxsmallRNA(se3)                    --------->LBD16                                  <xxxxxxxxxxxxxxxxsmallRNA(si3)                  <---------LBD16                            <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                 ------>ZmHOX2a(2)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <------ZmHOX2a(2)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <---------ARR14(2)                          <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                  ------>NtERF2                       <xxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxsmallRNA(s)                       <xxxxxxxxxxxxxxxxsmallRNA(s)                    <xxxxxxxxxxxxxxxxsmallRNA(i)                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <xxxxxxxxxxxxxxxxxsmallRNA(si3)                     <---------ANAC46<xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<xxxxxxxxxxxxxxxxxsmallRNA(se3)                     --------->TGA1a<xxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                     <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     <---------O2<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------LBD16                  ----------->HVH21<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->DEAR3(1)                  --------->ANAC46--------->ANAC58                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->ANAC46--------->ANAC46                 <xxxxxxxxxxxxxxxsmallRNA(le3)         <-----------RAV1(2) <---------ALFIN1                 <xxxxxxxxxxxxxxxxsmallRNA(s) <---------ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->ANAC58--------->ANAC58                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) <-----------HVH21<xxxxxxxxxxxxxxxxxsmallRNA(fl3)                <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(s)--------->ANAC46      --------->LBD16--------->O2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------ANAC46<---------TGA1a<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)------>NtERF2     <---------LBD16<xxxxxxxxxxxxxxxxsmallRNA(s)    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) *TSS <--------    <---------LBD16<xxxxxxxxxxxxxxxxsmallRNA(s) ------>ZmHOX2a(2) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -->LBD16      ------->TEIL<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---------YAB1--------->ARR14(2) -LBD16       <-----------GT1 <xxxxxxxxxxxxxxxxsmallRNA(le3) --------->ANAC58--------->ANAC58  <-----   aattgttcgggggattgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacggatccggatgttattatg  9815300                                                                            --------->WRKY12                                                                            ----------->HVH21                                                                            --------->WRKY38(1)                                                                          <---------DEAR3(2)                                                                          <---------ATERF1(1)                                                                          <---------At4g35610               --------->YAB1                                             --------->At4g35610             --------->AHL20(1)                                          <---------MYB46(3)             --------->AHL20(2)                                       --------->DEAR3(1)             <---------AHL20(2)     --------->AHL20(2)               --------->ANAC58            --------->YAB1          <---------AHL20(2)               --------->ANAC46        <---------AHL20(2)   --------->ANAC58                        --------->ANAC58        --------->AHL20(2)   --------->ANAC46                      <---------ALFIN1               <--    --------->YAB1        --------->ZAT14                         <---------REM1(2)               ---  <-----------TBP         --------->ARR14(2)                    --------->ANAC46       ------------>CBF -YAB1 --------->AHL20(2) <---------ARR14(2)                  <-----------------AGL1 ----------->GT1< ------RAV1(1)<---------YAB1 --------->ANAC58         <------ZmHOX2a(1)  <---------DEAR3(1)  --------   ttgcatttataaaattataataccgtagtatacgcaaattaaacaaaacattttgaggacgcgttcccaacacggccggtgaccaaagagtcaatttaag  9815400  Previous    Next  AGI:  At4g17610.1    Description:  tRNA/rRNA methyltransferase (SpoU) family protein. similar to hypothetical protein OsI_009400 [Oryza sativa (indica cultivar-group)] (GB:EAY88167.1); similar to hypothetical protein OsJ_008729 [Oryza sativa (japonica cultivar-group)] (GB:EAZ25246.1); similar to RNA methyltransferase, TrmH family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93471.1); contains InterPro domain tRNA/rRNA methyltransferase, SpoU; (InterPro:IPR001537) Range:  from: 9805526    to: 9814923    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g17612.1    Description:  pre-tRNA. tRNA-Trp (anticodon: CCA) Range:  from: 9815216    to: 9815287    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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