Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                     --------->MYB59       --------->YAB1                                               <---------ICU4      <---------AHL20(2)                                      --------->TOE2(3)       <---------MYB46(3) ---------->GT1                                             <---------YAB1      ------->GAMYB -------ANAC58                   --------->TOE2(3)       <---------YAB1         <---------ALFIN1 -------ANAC46        <-----------GT1                 <---------RVE1(1)        <---------MYB55(2) -------ANAC58  <---------At4g35610                  <---------ARR11(3)        --------->MYB46(3) --->DOF2       xxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->ARR11(3)      --------->WOX13(1)   <xx   gcgtgtaaataatagtatagctcattacctctcaacctctaattgtattcatggagatttttattcttaatcaggtcgtcaaccaccttggttacaaaaa  9803300                                                                        <---------AHL20(1)                                                               <---------AHL20(2)                                                               --------->AHL20(2)                                                               <---------YAB1                                                              <---------AHL20(2)                                                              --------->AHL20(2) <---------TOE2(3)                          <---------YAB1                --------->AHL20(2)    <---------YAB1                          <---------AHL20(2)            <---------AHL20(2) --------->AHL20(2)                         --------->AHL20(1)            --------->AHL20(2)  <---------AHL20(2)                         --------->AHL20(2)            <---------AHL20(2)  <---------YAB1                         <---------AHL20(2)            --------->YAB1   --------->AHL20(1)                         <---------AHL20(1)        --------->AHL20(1)   --------->AHL20(2)                        --------->YAB1             --------->AHL20(2)   <---------AHL20(2)           --------->TOE2(3)                       <---------AHL20(2)   <---------ARR11(3)         --------->ARR11(3)                       --------->AHL20(2)    --------->ARR11(3)         <---------ARR11(3)                    <---------AHL20(2)      --------->AHL20(2)   ----------->GT1   >>>>>>>>>GT-1             --------->AHL20(1)   <---------AHL20(2)       <------- <----------DOF2  ----------->GT1              --------->AHL20(2)  --------->AHL20(2)        -------- xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)            --------->AHL20(2)   <---------AHL20(2)------->TEIL   ctactttgtaaaatctcaattggttaatataattcagtttgcagaaaaaaaaattaattaaaattttaattaaatatattattaatgaatttagtttagt  9803400                                                                     --------->MYB52(2)                                                         ----------->GT1                        <----              ---------->DOF2                   --------->AHL20(1)<---------ANAC46        --------->YAB1        <----------DOF2                         --------->ARR11(3)<---------ANAC58     --------->YAB1     ---------->ID1     --------->TOE1(3)       <---------AHL20(1)<---------ANAC58    --------->ICU4    <-----------GT1     --------->TOE2(3)  ----------->GT1  <-------TEIL              <---------YAB1< --------AtSPL8 ----------->GT1    ----------->GT1      <---------------AtSPL8      --------->YAB1  < ------->AtSPL8--------->DAG2    <---------ANAC46       --------->MYB59           --------->AHL20(2)<   acaatttttccttttaaaaagttaaaccttaaattgtttgtaaaatggaaaatattgtaaggtacattgcttagttgaatacaaaataataataaaaact  9803500            <---------ANAC55(2)            ----------->GT1       --------->WOX13(1)     <---------WOX13(1)   --------->ATHB12 <---------WOX13(1) ------DOF2--------->MYB59     <----------DOF2 ---------ANAC58           <----------DOF2 ---------AtLEC2       --------->WRKY38(1)                                   --------->AHL20(2) ---------ANAC58    --------->ALFIN1          --------->YAB1               <----------DOF2        ---   ttgcttgattaatcaggtaaatgtgttgactttctttgtttgataccctcataacaacaccaaaatactgggatgggcttttaatacgagcccatgaaga  9803600                                                       ------------>CBF                                                <---------ANAC58                                                <---------ANAC55(1)                                                <---------ANAC58                                                <---------ANAC46                                                <---------ANAC55(2)                                            <-----------HVH21                                           --------->ANAC58                                           --------->ANAC46                                           --------->ANAC55(2)                          --------->REM1(1)                                           --------->ANAC55(1)                  <-------TEIL       <---------DAG2          <----------ID1<---------MYB52(1)           --------->ANAC58       <----------DOF2         ----------->GT1  --------->ANAC55(2)       --------->ANAC58  --------- ------->GAMYB           --------->REM1(2) <---------ANAC55(2)          --------->MYB52(1)  <-------- ------>MYB52(1)     ------->TEIL          --------->ANAC58        ---------->DOF2    <-----------GT1   taacagtcacttttttgtttctgtatgtgtagagggaaaaaaaacacgttacgtagtctcaatttgggagaaagaaacgacatacatgttacatctttaa  9803700                                                                                     --------->LBD16                                                                                     ------>NtERF2                                                                                    --------->ANAC58                                                                                    --------->ANAC58                                                                                    --------->ANAC46                                                                         <-------GAMYB                                                                         --------------------->WRI1                                                                        <---------ANAC46                                                                        <---------ANAC58                                  ----------->GT1               ----------->RAV1(1) --------->DEAR3(1) >TOE2(3)          --------->MYB46(3)             ---------->DOF2       <---------ANAC58 --DOF2           *TSS       <---------YAB1  --------->ZAT14 --------->AtMYB61     <---------LBD16   acgataacaagtctatttagaaccactagttgtgatttgtgaaactctgaagtaaagaagaaaccacaacaatggcgttgttctccccgccaatctcttc  9803800                                                         <------------MYB.PH3(1)                                                         <------------AtMYB77                 -------                                                         --------->MYB46(3)                   ------>NtERF2                                                        <---------At5g28300                  --------                                                       --------->ARR14(2)            --------->ZAT2                                                       <---------ARR14(2)            <---------At4g35610                                               ------>ZmHOX2a(1)             <---------MYB52(1)                                              <---------ALFIN1              <-----------HVH21--------                                           <---------ALFIN1                 <-----------TGA1 <-------                                  <---------YAB1       --------->MYB52(1)  --------->ANAC46------>ZmHOX2a(1) <---------CCA1(2)               <-----------GT1      ----------->HVH21------>ZmHOX2a(1)   ==========   ttcatctcttcaaaatcccaatttcattcccaaattttcattctccctcctctccagtaaccgcttctctctcctctccgtcactcgagcttcctccgac  9803900                             <---------ANAC46                        ------>NtERF2                        <---------ATERF1(1)                       --------->RAP2.3(2)                       --------->RAP2.3(3)                       --------->DEAR3(1)                      <------NtERF2                      --------->DEAR4(2)                      --------->RAP2.3(1)                      --------->ORA47(2)                      --------->ATERF1(1)                     <---------ATERF1(1)                     --------->ABI4(1)                    --------->DEAR3(1)                    <---------DEAR3(1)                    --------->ATERF1(2)                    --------->RAP2.3(3)                    --------->RAP2.3(2)                    --------->DREB2C(2)                    --------->RRTF1(3)                    --------->RRTF1(2)                   --------->RAP2.6(1)                   --------->ORA47(2)                   --------->ERF1                   --------->RAP2.3(1)                   --------->DEAR4(2)                   --------->ATERF1(1)                   --------->RRTF1(1)                  <---------ATERF1(1)                                                     -----------                  --------->ABI4(1)                                                       <-------GAMYB                 --------->AtMYB61                                                      <---------ANAC46                 ------->GAMYB                                                        ------------>AtMYB77                 --------->DEAR3(1)                                                  --------->DEAR3(1)                 --------->DREB2C(2)                                                <---------LBD16                 <---------ALFIN1                                                  --------->MYB52(1)                 --------->ANAC46                                                 <---------ALFIN1                --------->DEAR3(2)       ------>ZmHOX2a(1)                     --------->YAB1                <---------MYB55(2)     ----------->RAV1(2)                   --------->ANAC58        --------->AtMYB61--------->ATERF1(1)    ------->PIF5                 --------->ANAC58      -------->P--------->MYB46(3)     --------->At4g35610                  --------->WOX13(1)      ------->TEIL------>NtERF2      <---------ARR14(2)                   --------->LBD16 --------->At5g28300   <------ZmHOX2a(2)--------->RAP2.6(2)<---------At4g35610               --------->ANAC58----------->GT1 ---->RAV1(1)   --------->DEAR4(2)  --------->ATERF1(1)                  --------->ANAC58<---------DEAR3(2) --->HVH21    <---------ALFIN1--------->LBD16   <-------PIF5             --------->ANAC46<---------MYB46(3) ->ANAC46    --------->MYB46(3) --------->REM1(2)                       <---------LBD16<---------MYB52(1) --ETT(1)    <---------MYB55(2)--------->ALFIN1 --------->LBD16---------->DOF2<---------ATHB12 ------ =========HOX2a_HOX2a------>NtERF2 <---------ATERF1(1) <---------ZAT6 --------->DEAR3(1)<---------DEAR3(1)   agtggatcaacctctcccaccgccgccgtctccgtggaggctcctgagcccgtggaagtgatagttaaagagcctccgcaatcaacaccggcggttaaaa  9804000            <------NtERF2            --------->MYB46(3)           ------>NtERF2          --------->DEAR3(1)          --------->AtMYB61        <-----------HVH21       --------->ANAC46       ------->GAMYB          <------NtERF2       --------->ANAC58      <-----------HVH21       --------->DEAR3(1)    ------>NtERF2                                   ========================       --------->ANAC58     --------->DEAR3(1)                               ========================       --------->RAP2.6(2) <------NtERF2                                   --------->LBD16      --------->MYB46(3)   --------->ATERF1(1)                            <---------LBD16      <------------AtMYB77 --------->RAP2.3(1)                  ----------->GT1    --------->ARR14(2)<-----------RAV1(1)              ------->GAMYB      --------->HSFB2a(2) >GT1 --------->DEAR3(2)  ------>NtERF2    --------->CCA1(2) --------->ALFIN1<------ZmHOX2a(1) ---->DOF2<---------ALFIN1<---------RAP2.3(1)       --------->MYB52(1)    <---------HSFB2a(2)       -   aggaagaaaccgccaccgctaaaaatgtcgccgtcgaaggtgaagagatgaaaacaacggagagtgttgtcaaattccaggatgcgagatggattaatgg  9804100                      ---------->DOF2                                                   <---------TOE2(3)                   <---------HSFC1(1)                                                <---------MYB52(1)                   <---------HSFB2a(2)                                            ------>ZmHOX2a(1)                   --------->HSFC1(1)                                           ------>ZmHOX2a(2)       ------>ZmHOX2a(2)                                   <---------ANAC46   <---------GLK1(2)      --------->At4g35610                                  <---------ANAC58   --------->ARR11(3)      <---------At4g35610                                  <---------ANAC58   --------->AGP1      <------ZmHOX2a(2)                      --------->GLK1(2)                --------->ARR14(2)     <---------ARR14(2)                     --------->ARR14(2)                <---------ARR11(3)     --------->ARR14(2)                     <---------ARR14(2)                <---------ARR14(2) ============HOX2a_HOX2a             --------->ATHB12 <---------ICU4        ----------->ARR10 =============HOX2a_HOX2a   ----------->GT1 <---------GLK1(1)  <--------P   --------->MYB59 -------->TOE1(2)  --------->HSFB2a(2)      <---------GLK1(2)<---------MYB46(3)<------ZmHOX2a(2)   aacttgggatctgaaacagttcgagaaagatggaaaaaccgattgggattctgtaatcgttgctggttagattagaattagatcctcgttaagttttttt  9804200  Previous    Next  AGI:  At4g17600.1    Description:  LIL3:1; transcription factor. similar to lil3 protein, putative [Arabidopsis thaliana] (TAIR:AT5G47110.1); similar to Lil3 protein, putative [Brassica oleracea] (GB:ABD64919.1); contains domain SSF103511 (SSF103511) Range:  from: 9803718    to: 9804885    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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