Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                  ---                     <------ZmHOX2a(1)                          --------->ANAC46                 <---                   --------->LBD16                              --------->bZIP60(2)             -----                  <---------LBD16         --------->ZAT6     <---------ZAT18                    <----                  <-----------RAV1(2)    <---------YAB1      <-------TEIL                  ----------     =======================HOX2a_HOX2a<---------ICU4        --------->ZAT18        ------>MYB46(1)--     <------ZmHOX2a(2)             <---------YAB1        --------------->AtSPL8     ------>MYB83-----    --------->ARR11(3)      <---------ANAC58             <---------------AtSPL8     -------->P  <----    <---------ARR11(3)      <---------ANAC58          <---------REM1(1)        <---------ALFIN1<-----   tcaagagatcaatttctcacccaggaaatagcttattagcattatcactgaattagatgtaagtacacatcacattactcaacacctacatgagaaagga  9724300 ----->ZmHOX2a(1) --->ZmHOX2a(2) ---ZmHOX2a(2) ---->ARR14(2) -----ARR14(2) >DOF2    <---------HSFB2a(2) ------->TOE2(3) ---->ARR11(3)               --------->ZAT6                               <-----------------------TaNAC69(2) -----ARR11(3)       <----------TaMYB80 --------->HSFB2a(2)      --------->GLK1(2)              <---- -ZmHOX2a(1)     ----------->GT1        <---------HSFB2a(2)      ------->TEIL               ---------   tcctaaaatactcgcgaagaagtatattcgaacactagccttctcgatagtgacagacaagaatacgaatctaagaggcgagaagagaacgaagatagaa  9724400                                                        --------->At5g28300                                                       <---------MYB46(3)  ------>ZmHOX2a(2)                                                       ----------->GT1    <------ZmHOX2a(2)                                                      <---------ANAC46   --------->ARR11(3)                                                      <---------DEAR3(1) <---------ARR14(2)                                             --------->ATERF1(1)         --------->ARR14(2)                                            --------->ZAT2               <---------ARR11(3)                                            <---------ZAT2               <---------ARR14(3)                                            <---------ATERF1(1)          --------->ARR14(3)                                            --------->At4g35610        ----------->ARR10        -----                                      --------->MYB52(1)<------NtERF2---------->DOF2            -----        <---------WOX13(1)       ----------->GT1      <---------DREB2C(2)--------->AGP1         <---- ------ID1                  <---------ANAC46<---------At4g35610  --------->LBD16          --------->TOE2(2) >CCA1(2)       --------->DAG2 ----------->GT1--------->RAP2.3(3)--------->At4g35610      --------->TOE1(2)   gacaaacctgatagacataaggctgaaatggagtagagaaaaacggagcagccatggcggtgaaaaccgcagaaagatcttccaaacaaaaacctccgaa  9724500                                              <---------ANAC58    <------ZmHOX2a(2)                                              <---------ANAC58   <---------ARR14(2)                                      <---------TGA1a            <---------ARR11(3)         --------->ANAC46             --------->ANAC46           --------->ARR14(2)        --------->LBD16               --------->TGA1a            --------->AGP1               <------  <<<<<<<<<CBP60g                     --------->O2              --------->At4g35610           -------  <<<<<<<<<SARD1                      <---------O2              --------->GLK1(1)             ------- ---->ARR14(2)                    <-----------HVH21         ------>ZmHOX2a(2)    --------->ANAC58 ---->GLK1(2)                    <----------DOF2      <------ZmHOX2a(2)          --------->ANAC58 -----ARR14(2)                   ===============bZIP_DOF   <------ZmHOX2a(2)     --------->ANAC46   tccaaatttccacagaaccaattggattagaaaacctttcacgtcgatgcgagacgatcagatcgcagatccaaataacacactcgaaacactctgagct  9724600                                                                                                    -                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               <-----                                                 ----------->RAV1(1)                           <-----                                     --------->At1g77200                                       ------                                     --------->DEAR3(1)                                        <-----                                    --------->MYB46(3)                                         ------                                    --------->DEAR3(2)                                        <------                                 ----------->HVH21  *TSS ----------->RAV1(1)                  <------                                <-----------HVH21------>MYB83                                 -------                            <---------MYB46(3)   ------>MYB46(1)                              -------                           --------->ALFIN1    --------->MYB46(3)<---------AHL20(2)          ------->TEIL          --------->LBD16 --------->At5g28300 --------->ANAC58   --------->AHL20(2)         <-------- ---At4g35610           <---------DEAR3(1)    --------->ANAC58  --------->AHL20(2)      --------->At4g35610 -->At4g35610     <---------HSFB2a(1)----------->HVH21--------->MYB52(1)                <---------At4g35610 -->ZAT2<---------LBD16<---------LBD16  <---------ANAC46<----------ID1              ----------->HVH21   ctctcaaaactccggtcgaaatgttcgcggtggatgtcaccgacgggaacccaacaaaacgacagattaaattcgcttaaatcggcctgaagctgcacgt  9724700 -------->GLK1(2) ->MYC2                <------------CBF --MYC2               --------->ATHB12                                                              < ->PIF5              <---------YAB1                                      <---------ICU4         ----- --PIF5             ------>ZmHOX2a(2)                                   <---------AHL20(2)    ------- ->MYC4            <------ZmHOX2a(2)                                    <---------YAB1        ------>MYB83 --MYC4           <---------ARR11(3)                                    --------->AHL20(2)    ------>MYB46(1) --MYC3           --------->ARR11(3)                                   <---------AHL20(2)   --------- ->MYC3          <---------GLK1(1)                                     --------->AHL20(2)   --------- --PIF4          --------->GLK1(1)                                     <---------AHL20(1)   ------->GAMYB ->PIF4     --------->REM1(2)                                          --------->AHL20(1)   <-------- ---TGA1a  --------->ALFIN1                                           --------->YAB1       <---------MYB52(2) ---O2   <---------ANAC58                                  --------->ARR14(2)              --------->MYB46(3) -->TGA1a<---------ANAC46                                  <---------ARR14(2)             --------->ANAC58 -->O2   <---------ANAC58  <-----------HVH21  ----------->GT1<---------LBD16<-----------GT1<---------MYB55(2) -ALFIN1 <---------ANAC55(1)                  --------->ANAC46 --------->LBD16            --------->ANAC58   ggaatctgtttacgtggagagatctcattggtcacaaaatacacatcgacgtaaaatttcatttccggtttaatataattacatttcttctcaaccaacc  9724800                                                                                    --------->AtMYB61                                                                                    --------->ZAT6                 ----------->GT1                                                --------->ETT(2)   --------->ZAT6<------MYB83                                            <---------ARR14(2) ----------DOF2  <------MYB46(1)                                         --------->ARR14(2) -->GAMYB       --------------->AtSPL8                              --------->YAB1 --------->MYB46(3) ->P            <---------------AtSPL8              --------->ARR11(3)   <-----------ARR10 >AtMYB61       --------->MYB59                    <<<<<<<<<<<<<<<<<LFY  --------->ARR11(3) >MYB46(3)  <---------AHL20(2)             ----------->GT1   --------->REM1(1)  <---------ETT(2) -MYB111(1)--------->AHL20(2) <---------YAB1    ---------->DOF2  <---------ICU4---------->ARF1     --   ctctttcactagatttatttggtacaaaatttcttattcaatagccggtttaaagacattggtacaacaattacaaatcttgtcgaccactagagacatc  9724900                                   --------->ANAC55(1)                                   --------->ANAC46                              ------>MYB46(1)                            ------->GAMYB                            --------->AtMYB61                           --------->MYB46(3)                      --------->ANAC58                      --------->ANAC58                      ----------------------->TaNAC69(2)                   ---------->DOF2                      --------->ANAC46   --------->TOE2(3)              --------->YAB1              --------->TOE1(3)    --------->ANAC58                  --------->YAB1              --------->TOE2(3)    --------->ANAC58         <---------ANAC58                 --------        --------->ANAC46  -------->P     --------->TOE1(3)  <---------ANAC58                <-------TEIL ------->ANAC46<----------DOF2------>MYB83<----------DOF2   <---------ANAC46             --------->At4g35610   tacagaactcacaaaacctttactaagcaaccatcccacgcaacctttactcttccattgttgtgtgtgaataatcagaaaggaaccaagtagcttcatc  9725000                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    -                                                                                            <--------                                                                                            ---------    --------->YAB1                       --------->ANAC46                  <---------ARR11(3) ------- --------->YAB1                      ----------->RAV1(1)         --------->YAB1     --------->ALFIN1- ->REM1(1)                   <-----------GT1      --------->AHL20(2)      <---------ATHB12<----------   tattaataagaaacttagatagtttcccaaataacttaacaacacaaaacaatttaagagcctgttttcatcaccaataacttcaagtggagacagatga  9725100      --------->YAB1   --------->WOX13(1)  ------>ZmHOX2a(2) <------ZmHOX2a(2) ---------AGP1 -------->ARR11(3) ---------ARR14(2)                                           <<<<<<<<<<<<<<<<<LFY ---------ARR11(3)                                          <---------ZAT14 -------->ARR14(2)                                          --------->ZAT14 -At4g35610                                        --------->AHL20(2)                ------->TEIL >At4g35610                                  --------->TOE2(3)                  --------->At4g35610 ---->HVH21                           ----------->GT1   <---------ICU4        <-----------RAV1(2) -------->AGP1                     --------->MYB52(1)   <-----------GT1     ----------->RAV1(1) -RAV1(2)    --------->ZAT6    ---------->DOF2     <---------AHL20(2)     --------->MYB46(3)---------   cagatctatcatctatctctatccatctctatacaaagaccggcaaaacttaataaaatcactacacattggctcatccaccagatgaatccaatagaaa  9725200  Previous    Next  AGI:  At4g17420.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47420.1); similar to hypothetical protein 31.t00054 [Brassica oleracea] (GB:ABD65092.1); contains InterPro domain Protein of unknown function DUF124 (InterPro:IPR002838); contains InterPro domain Tryptophan RNA-binding attenuator protein-like (InterPro:IPR016031) Range:  from: 9722368    to: 9724652    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g17430.1    Description:  similar to hypothetical protein 31.t00055 [Brassica oleracea] (GB:ABD65093.1) Range:  from: 9724852    to: 9726840    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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