Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  ------>MYB83                                                                              <---------MYB46(2)                                                                              <---------MYB52(2)                                                                              <---------MYB59                                                                              <---------MYB111(1)                                                                              <---------MYB111(2)                                                                              --------->AtMYB61                                                                             --------->ANAC46                                                                      --------->ANAC46                                                                 --------->ARR14(2)                                                                 <---------ARR14(2)------->GAMYB                                                              <------NtERF2  --------->ANAC55(1)                            --------->ALFIN1                 ------>NtERF2   --------->ANAC55(2)                     <------NtERF2                          --------->ATERF1(2) ------>MYB46(1)                   --------->ETT(1)                         <---------ATERF1(2)--------->MYB55(1)                 <-----------HVH21                        --------->ZAT2     --------->ANAC58              <---------ANAC58                            <---------ZAT2   <---------ALFIN1            ------->TEIL  --------->ALFIN1                --------->At4g35610--------->ANAC58      <- ---->REM1(2) <---------ANAC58<----------ID1              <---------At4g35610<---------ANAC55(2)-----   tagccgagacgacgagccttgtcgggacgagtgggacgaacaagacgaacaatggaaggctgctggcgatactcccaacacctaaccctctgaagaaacc  9715400                                              --------->ANAC58                                              --------->ANAC46                                              --------->ANAC58                                         <---------------AtSPL3                                         <---------------AtSPL8                                       ------->TEIL                                       --------->ARR14(2)                                    --------->ANAC55(2)                                    --------->ANAC58                                    --------->ANAC58                                        <--------                                    --------->ANAC55(1)                                  <---------HSFB2a(2)                                    <---------ANAC55(2)                                  --------->HSFC1(1)                                  <---------ALFIN1                                       <---------HSFC1(1)                                ------>NtERF2<---------ZAT18                             --------->HSFB2a(2)                                <-----------HVH21                <-----------GT1   <-----------GT1       ----------->HVH21       --------->ANAC46   ----------->RAV1(2)             --------->AHL20(2)       ------->GAMYB           <---------ETT(1)   --------->At4g35610        ------>ZmHOX2a(1) ----------HVH21               ----------->HVH21 ------->TEIL --------->YAB1--------->TOE2(3)      <- ---->TOE2(3)        ------>ZmHOX2a(1) <---------ARR14(2) --------->YAB1    --------->TOE1(3)--------   tcatcacatccgactgcttcttcctccatagctccgacacgtatttgtacgcacctgtaatcaaaaatcacatttcatccttaattaacttctagaatct  9715500                                                                     --------->ATERF1(1)                                                                     <------NtERF2                                                                    <-----------HVH21                                                                    <---------ATERF1(1)                                                                    ------>NtERF2                                                                   --------->DEAR3(1)                                                                   --------->O2                                                                   <---------O2                                                                   <---------DEAR3(1)                                                                 --------->LBD16                             ----------->GT1                     ------>NtERF2                 <-----                   --------->At4g35610                          <---------LBD16                <----- -GLK1(2)     --------->ANAC58                                  <---------RAP2.6(2)           ------- --------ATHB12    <---------At4g35610                         <---------LBD16    <----------DOF2 ->GLK1(2)    --------->ANAC58                             <----------DOF2<-----------HVH21   <------   aatgaacaatacagaaacgacatctgagagagagataatagtgagaaacatacccattgcgattttccggcgtcgcagtcacttctttcttcgaattagg  9715600      --------->AHL20(2)    <----------DOF2    <---------------AGL15    --------------->AGL15                                                       <----------DOF2   <-----------------AGL3                     ---------->DOF2                   <---------DAG2 -MYB83                           <---------GLK1(1)        <------------CBF--------->DOF5.7(2) -MYB46(1)                        --------->GLK1(1)       --------->ATHB12 <---------MYB52(1) -->MYB59                      <---------TOE1(3)         --------->ICU4   <-------GAMYB<------------CBF ---TOE2(3)             *TSS   <---------TOE2(3)  ---------->DOF2  <----------DOF2  --------->ANAC55(2)   tttgtgctttaaatagatggctccatgggaattagggtttccatcagacaaagaaagcccttattgggcctttttccgttagctttatgtattgggcctt  9715700                                                                               <---------ANAC55(2)                                                <---------TOE2(3)              <---------ANAC46                                              <---------AHL20(2)               <------MYB46(1)                                           <---------AHL20(2)     --------->ANAC58             <---------ARR11(3)           --------->AHL20(2)      --------->ANAC58               ----             --------->ARR11(3)           <---------AHL20(2)      --------->ANAC46    *TSS<----------DOF2      --------->TOE2(3)                  <---------YAB1   <----------ID1      --------->MYB46(2)-----   ----------->RAV1(1)          <XXXXXXXXXXXXXXXXXXXXMIR841B*   ---------->DOF2<------MYB83     <----  --------->REM1(1) <------------CBF   --------->YAB1---------->DOF2          --------->MYB59   <----   cgctacaacataaaacatctctaattgaactgtatggcccattataaatttatgtaaaaggagccaaaacgcaagagaattaggtgaagagtcttttgga  9715800                                                                                                -----                                                                                                -----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               <-----     <---------YAB1                                                                          <-------  <---------MYB52(1)                                                                       ----------  <---------ARR14(2)                                 --------->GLK1(1)                 ------->GAMYB  --------->ARR14(2)                         <---------ARR14(2)                        --------->ANAC46 <-------GAMYB                               --------->ARR14(2)                        --------->ANAC58 ----->ARR14(1)                         <---------ANAC58                        --------->WOX13(1) ---->ARR14(2)                          <---------ANAC46                    --------->GLK1(1)-------- -----ARR14(2)                      <---------ZAT6   <---------GLK1(1)------>ZmHOX2a(1)--------->ANAC58 -----GLK1(2)         ------>ZmHOX2a(1) <---------ANAC58       --------->ARR14(2)  --------->MYB46(3)   ttcggttacgatagttctctattcctcttcaaaccctagagttcgtgtttctgcgatatccatcggtttctccttcatatatccatcaaacgccaaagat  9715900                                                          --------->ABI4(2) ---->GLK1(2)                                             --------->MYB55(2) ---->ARR14(1)                                            <---------MYB46(3) ----GLK1(2)                   <---------At5g28300       <---------AtMYB61 --->ARR14(2)                 <-----------GT1            --------->ALFIN1 ----ARR11(3)     ------>ZmHOX2a(2)                   -------------->OsCBT --->ARR11(3)    <------ZmHOX2a(2)              --------->ARR14(2)                    <---------HSFC1(2) ----ARR14(2)   <---------ARR14(2)              <---------ARR14(2)                    --------->ZAT2 --ATHB12       <---------ARR11(3)      --------->YAB1<---------DEAR3(1)              <---------ZAT2 >DOF2          --------->ARR11(3)--------->At5g28300--------->LBD16                  --------->HSFC1(2) --->ARR10      --------->ARR14(2)--------->LBD16    <---------LBD16        ------>ZmHOX2a(1)   tctctaattctctctcgagatcgtctgcaatttcaccgtgaatcatcagggataccgcggtggtttcgattctatttcctcgattcgaagcttggagagt  9716000                                        <---------ARR11(3)                                        --------->ARR11(3)                                       --------->RVE1(1)                                       <---------GLK1(1)                                            <    --------->At4g35610                --------->GLK1(1)                              <---------ANAC58  <---------GLK1(2)                   --------->ARR11(3)                              <---------ANAC58 --------->At4g35610           <---------ANAC46        --------->TOE1(2)        <---------ALFIN1 <--- <---------At4g35610<---------ATHB12  <---------ARR11(3)                       <---------REM1(2) <---   ttcagcttctgaattgaagccagtgattcaattgtttggagatatctgagcattgtccctgcgatgtattcgattcaatccaacacgggcgttctcgttt  9716100                                                    <-----------HVH21                            ----        <----------DOF2                            <---------ANAC58                       --------->MYB46(3) xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------ANAC58                                    -------->P - ------ANAC58              --------->ATHB12        <---------ANAC58                      ------>MYB46(1) ------ANAC58      --------->GLK1(2) <---------ANAC58----------->HVH21                   ------>MYB83   cgtttctgagctttgtgggaaattctcgttgatttgatttcgtcttgaagagcgcgtgagaggtttcttctgtcgaattttgttgaagtccaaccagaga  9716200                                                                                <---------TOE2(3)                       <---------DAG2            <----------DOF2                <---------TOE1(3)                    <---------AHL20(2)    --------->GLK1(1)            <---------ANAC58       --------->YAB1  <----------DOF2    <---------GLK1(1)            <---------ANAC46 ------->GT1  ----------->GT1         --------->HSFB2a(2)              <---------ANAC58             - --------->DOF2     <-----------GT1   <---------HSFB2a(2)       <---------AHL20(2)         ----------   agtaaagaatcatattttgtaattactttttgtttttgttttggaaatcaactttctggcctccatttttttggcctgggttaaggtttttttcaaagag  9716300  Previous    Next  AGI:  At4g17390.1    Description:  60S ribosomal protein L15 (RPL15B). Identical to 60S ribosomal protein L15-2 (RPL15B) [Arabidopsis Thaliana] (GB:Q8VYF1;GB:O23582); similar to 60S ribosomal protein L15 (RPL15A) [Arabidopsis thaliana] (TAIR:AT4G16720.1); similar to 60S ribosomal protein L15 [Brassica oleracea] (GB:ABD65137.1); contains InterPro domain Ribosomal protein L15e; (InterPro:IPR000439); contains InterPro domain Ribosomal protein L23/L15e, core (InterPro:IPR012678) Range:  from: 9714104    to: 9715624    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g17410.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47430.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47430.1); similar to hypothetical protein 31.t00039 [Brassica oleracea] (GB:ABD65123.1); similar to hypothetical protein 24.t00020 [Brassica oleracea] (GB:ABD64942.1); contains InterPro domain DWNN domain (InterPro:IPR014891); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083) Range:  from: 9715786    to: 9721943    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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