Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                                                             <-------                                                                                             --------                                                                                          --------->ANAC58                                                                                          --------->ANAC58                                                                                          --------->ANAC55(1)                                                                                          --------->ANAC55(2)                                                     --------->AHL20(2)                   --------->ANAC46                                                     --------->YAB1                       <---------ANAC55(2)                       ---------->DOF2           <------ZmHOX2a(1)           ----------------------->TaNAC69(2) ----->ANAC46--------->ATHB12                  --------->ANAC58              ----------->GT1 -------- -TEIL      <---------YAB1                     --------->ANAC58   --------->YAB1          --------->bZIP60(2)   tgaaacgctgaattgtcattggtagaaaaggaaatggaagagtagtagtaaggaattatatcagttaataagagttgtaatgtgaatagaacacgtaact  9669000           <-------MYC3         ------->TEIL               --------->ZAT6 ----->ZAT18                   <----------DOF2                             --------->CCA1(2) --ARR14(2)------->MYC2     --------->ARR11(3)                      <------ZmHOX2a(1) ->MYB52(1)<-------MYC2     <---------ARR11(1)--------->ARR11(3)  <---------TOE2(3)           ------- ->ARR14(2)------->MYC3    <---------CCA1(2)  <---------ARR11(3)  <---------TOE1(3)           <------   ggactagtatgcatgtgtatgagaagttcaaatctttaactctcacaatatcgtcgaagacaattgtttaggataagatagaaactaaatgagcatttaa  9669100          --------->DAG2                   ---------->DOF2         ---------->DOF2              --------->ALFIN1       --------->GLK1(2)  ---------->DOF2            <---------ANAC58--------->ANAC58--------->ARR14(2)                ------ <---------AHL20(2)    <---------ZAT6<------ZmHOX2a(1)      <---------GLK1(2)                  ------ --------->AHL20(2)<---------ZAT14  <---------ZAT2  <---------YAB1                             <----- -->AHL20(2)       --------->ZAT14<-----------RAV1(2)--------->YAB1                           <------ ---AHL20(2)  --------->ZAT18<---------ANAC58--------->ANAC58<---------ARR14(2)           --------->At4g35610   aatttaaagaaaaaagggaactgtagagttgccttggcaggaggggaaagcattatcatgaagaatctggtctacaagaatgggaaatggacagatgtat  9669200                                                                --------->REM1(1)                                                       --------->O2                                                       --------->ANAC58                                                       <---------TGA1a          ------>MYB83                                 --------->ANAC58          ------>MYB46(1)                              <---------O2                   --------->ANAC46         --------->WOX13(1)                            --------->bZIP60(2)            --------->ANAC58        <---------ALFIN1                               --------->ANAC46               --------->ANAC58        --------->MYB46(3)                  <---------ETT(2)  ------>ZmHOX2a(1)  ------>MYB83    <---    --------->MYB46(3)                    XXXXXXXXXXXXXXXXXXXX>MIR3440B-5P       ------>MYB46(1) <--- ->TEIL --------->AtMYB61            ============================bZIP_DOF      <---------MYB59   <--- --->ARR14(2)                        <----------DOF2   --------->TGA1a --------->ANAC46          <--- ----ARR14(2)      --------->YAB1--------->PCF5      <---------ALFIN1  --------->ANAC58   ------>NtERF2 ---CCA1(2)<---------ATHB12   --------->ALFIN1  --------->MYB46(3)     --------->ANAC58  --------->RAP2.6(2)   ctgttcaccaccaatccatcttcataactcaagtggtccctttctctcgacccatccacgtctccttcatcacaagtaagaccaaattaagccaccattt  9669300                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                                                  <--                                                                                                 <---                                                                                                <----                                                                                                -----                                                             ---------->DOF2                    -----        <---------At4g35610              ----------->TBP   ----------->HVH21                   <----- ------ANAC58                          <----------DOF2--------->ANAC58                         <----- ---MYB46(1)                       <----------DOF2    --------->ANAC46                        <------ ------ANAC58              <----------DOF2            --------->ANAC58                        <------ ---MYB83      <----------DOF2  ---------->ID1 --------->ANAC46              *TSS    --------->GLK1(1)   ggtgtctgtcatcttctctttaatgctctcttttgttctttctttataaacacaacaagacatgaaaggtttttgggaacttgtctgagttccaatgcgg  9669400         ----------->RAV1(2)         --------->At4g35610         <---------At4g35610       --------->YAB1  <---------At4g35610 ------->ZAT2 ------->At4g35610                                         <---------ANAC46 --------ZAT2                                             <---------At4g35610 --------At4g35610                                        --------->At4g35610 -------MYB46(3)                                         <---------RAP2.3(1) -------ATERF1(1)              <---------ANAC58         <---------ANAC58 ------DEAR3(1)                <---------ANAC46         <---------RAP2.3(2) -----At4g35610                <---------ANAC58         <---------RAP2.6(2) ---->ATERF1(1)     -------->P <---------ANAC55(1)      <---------RRTF1(2) ---->At4g35610     ------>MYB46(1)                     <---------ANAC58                     ------>NtERF2 ----ATERF1(1)      ------>MYB83                        <---------ANAC46                  <---------At4g35610 ----RAP2.3(1)     <---------ALFIN1             --------->YAB1                            --------->At4g35610 ---RAP2.6(2)     <---------ALFIN1        ------->TEIL <---------LBD16                 <----------DOF2 ---RAP2.3(2)  ------>ZmHOX2a(2)      <---------------AtSPL3                       <---------ATHB12   ctgctgctatcatctgatccccaacccgaacttacgtctacatgtacctctcatagttgcggctggaagccttactctcattccaatgactttgctgcca  9669500                                                                                --------->ZAT14                                                       --------->ANAC58         --------->SPL7                                                       --------->ANAC58       <-----------HVH21                                                       --------->ANAC46    ------>NtERF2                                             ------>ZmHOX2a(1)      <-----------RAV1(1)                     ------>ZmHOX2a(1)  <---------ANAC58            <---------MYB46(3)             --------->YAB1             <---------ANAC58           <---------MYB52(1)  ------>ZmHOX2a(1)         ------>ZmHOX2a(1)        --------->YAB1     <---------ALFIN1    <---------ANAC58      ------>ZmHOX2a(1)        <----------DOF2      <---------REM1(2)    <---------ANAC58 -----------   acgcgttcctccttctcatcatcctcttctgttctttcatatgcgtcctctctctccacgctgctatccgttgttgcctccgtccagtcctccaacatgt  9669600                                                 --------->O2                                                 <---------O2                                               <---------ALFIN1                                             ------>NtERF2                                             <---------ALFIN1                                            ----------->HVH21                                            --------->ANAC58                                            --------->ANAC58                      ------>NtERF2 --------->ANAC58              ------->TEIL          --------->ANAC58                       ------>MYB83 <---------At4g35610              <---------ARR14(2)--------->HSFB2a(2)                        ------>MYB46(1)              --------->ARR14(2)<---------HSFB2a(2)                      --------->TOE1(2)            --------->LBD16--------->MYB46(3)<-----------HVH21   ------>NtERF2       ---------->DOF2        <---------ARR14(2) <---------MYB55(2)----------->RAV1(1)------>NtERF2       <---------ATHB12        --------->ARR14(2)--------->ANAC58  --------->ANAC46   --------->LBD16 --------->ANAC58       <---------ALFIN1   <---------ALFIN1  --------->LBD16   --------->LBD16  --------->ANAC58      ----------->HVH21   --------->ANAC58  <---------ETT(1) <---------LBD16<---------ZAT2         -- >RAV1(1) <---------LBD16------>NtERF2     --------->LBD16   --------->LBD16--------->ZAT2     ------   ccctaagcccgacccggaccttgaggccacccatccagacgctcccccgacacttgtctactccccgggcctaaacctagcaggcaatgaagcagagtgc  9669700                                        --------->ALFIN1                                      <---------ANAC58                                      <---------ANAC58                                    <---------ANAC58                                    <---------ANAC58                                    <---------ANAC46                                 ----------->HVH21                                 <---------SPL7                             <---------ALFIN1                          ----------->HVH21                                                     -----                         <-----------HVH21          <-------TEIL                       --------->ALFIN1                         --------->At5g28300       --------->AtLEC2                  <---------O2                        ----------->GT1 <-----------RAV1(1)                       --------->LBD16 ------->ATHB12        <---------DEAR3(1)        --------->At4g35610 <-------MYC3<---------HSFB2a(2) --->ZAT18    --------->GLK1(1) <---------DAG2   --------->CCA1(2)   ------->MYC3--------->HSFB2a(2)   atcatttgtttgtctgaattccaagacggtgacaccttacgcgtgttggagagatgcaaacatggattccacgtttattgcatccagaagtggctctcct  9669800                                                --------->AtMYB61                                                --------->TOE2(3)                              <-----                                              ------>NtERF2                                <---------                        --------->LBD16      --------->ANAC46                      <---------ZAT14                        <---------SPL7       <---------ALFIN1                      <---------ZAT18                      <---------LBD16     --------->ANAC46                  --------->MYB52(1) ------                <---------ALFIN1         ------>ZmHOX2a(1)                <---------MYB52(2) <-------             ---------->ID1     <---------ARR11(3)                      --------->ZAT6 --------->TOE2(3)       <---------YAB1--------->MYB52(1) <---------ALFIN1       ---------->DOF2 <---------------AtSPL8 ->ZmHOX2a(1)--------->PCF2     --------->ARR11(3)     --------->ZAT14-------->P   --------->ZAT18  <   catcccattcttcttgtcccacttgccggacaaacatcttctcctccccacctcaacttcactcacaaagcttaccactaacgagtacaccttagtcaga  9669900  Previous    Next  AGI:  At4g17245.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G47610.1); similar to RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) containing protein [Brassica oleracea] (GB:ABD64996.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 9669377    to: 9670017    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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