Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 --------->ZAT18                                                                               <---------ZAT18                                                                          ------->GAMYB                                                                         <---------ATHB12                                                                         --------->MYB46(3)                                                                        ------>MYB83                                                                        -------->P                                                                        ------>MYB46(1)                                                                       --------->MYB55(1)                                                                      --------->AtMYB61                                                                      <---------MYB111(2)                                                                      <---------MYB46(2)                                                                      --------->MYB46(3)                                                                      <---------MYB55(2)                                                      <-----------GT1 <---------MYB111(1) ------>ANAC58                --------->CCA1(2)   <------ZmHOX2a(1) ------->TEIL   <-------MYC3 ------>ANAC58       <---------At4g35610    ---------->DOF2       <---------ZAT18  ------->MYC3    <- ------>ANAC46       --------->At4g35610----------->GT1<-----------GT1--------->DEAR3(1)  <------ZmHOX2a(1)   aagcaaatacaaaatgagcattgagatgaaagataagaagagaagtaaaagaggaattacccattcaatgcaccaaccaagagcacatgagaggaaagtc  9650500                                               --------->AtMYB61                                               ------->GAMYB                                <---------ANAC46                          --------->AtLEC2       <---------MYB52(1) --------->REM1(1)    ----------->RAV1(1)  <---------ANAC58      --------->ANAC58      <-----------HVH21<---------ANAC58       --------->MYB46(3)    <---------ANAC58 --------->ZAT14     --------->ANAC46  <---------ANAC58      -------->P            --------->At4g35610    --------->ANAC46 ---------DOF2  <---------WRKY18(1)         --------->WOX13(1)     <---------At4g35610    --------->ANAC58   tctttctccgtcaagtcttgaccttgcttcaacagcttgtagctatcaaccacagagagaccacgatttagcttccctgcaaaacagaacacacacaagt  9650600                                                        ------>NtERF2                                                        --------->LBD16             --------->DAG2                                                       <---------ANAC46     <---------At4g35610                                                      <---------LBD16       --------->At4g35610    --                       <---------TOE2(3)            --------->DEAR3(1)     --------->GLK1(2)     ----                       <---------TOE1(3)            --------->AtMYB61   --------->ANAC58        <----           --------->At4g35610                   <---------ALFIN1    --------->WRKY18(1)      -------        <---------At4g35610              --------->HSFC1(2)      --------->ZAT14   ---------->DOF2 <-        --------->At4g35610              <---------HSFC1(2) <-------TEIL--------->ANAC58  <---------ARR14(2)   tttgtttatgagctgcttaagtttgaaggtaatgtctgagtgaagcttctctcacctccgcgtacattgtagtcaagcatctgcaaaaagaggttccaat  9650700                                                                                         ----------->GT1                                                                                        <---------MYB46(3)                                                                                        <---------DEAR3(1)                                                                                       <-------------                                                                                    <-------TEIL                      --------->At4g35610                                          --------->GLK1(2)                      <------ZmHOX2a(2)                                           <---------ARR14(2)                     <-----------ARR10                                          ----------->ARR10                     --------->ARR11(3)                                     >>>>>>>>>WRKY18                     --------->GLK1(2)                                     --------->WRKY12                     <---------ARR11(3)                              --------->ANAC46 <---------LBD16                     <---------AGP1                                  --------->ANAC58<---------ANAC46 ------->At4g35610   <---------ARR14(2)                              --------->ANAC58<---------ANAC58 ----->YAB1<-------TEIL------>ZmHOX2a(2)                           ---------->DOF2<---------GLK1(2) -----ATHB12         --------->ARR14(2)                           --------->WRKY18(1)<---------ANAC58 -->WOX13(1)    ---------->DOF2                                  <-----------HVH21--------->ARR14(2) --------At4g35610  <------ZmHOX2a(1)                   <------ZmHOX2a(1)  ----------->HVH21      ---   cagcagaaacaaattcatcaaaggatctgagtttaagtgaaaatggaagtgaatcgaaggagtacccgttcaagccattgacgagattcgtgggtgaatt  9650800                    <------ZmHOX2a(2)                                     --------->ATHB12                    ====================================HOX2a_HOX2a       --------->YAB1                   <---------ARR14(2)                                   <---------------------WRI1                   --------->ARR14(2)                               ------>NtERF2            ---------->DOF2                                         --------->LBD16         ------>ZmHOX2a(2)                                        ------>ZmHOX2a(2)        <------ZmHOX2a(2)                                        =====================HOX2a_HOX2a       <---------ARR14(3)                                        --------->ARR14(1)       <---------ARR11(3)                                        --------->CCA1(2)                  -       --------->ARR11(3)                                        <------ZmHOX2a(2)                  -       <---------ARR14(2)                                       <---------GLK1(2)                   -       --------->ARR14(2)                                       <---------ARR14(2)                  <       --------->ARR14(3)                                 <---------GLK1(1)      <------ZmHOX2a(2)  <       --------->GLK1(2)                               <-------TEIL--------->ANAC58               ---      =====================HOX2a_HOX2a                <--------P--------->AGP1 <------ZmHOX2a(1)-----      <------ZmHOX2a(1)                             <------MYB46(1)--------->ANAC58        --------->ALFIN1     --------->HSFB2a(1)                            <------MYB83--------->ARR14(2)       <------MYB83     <---------HSFB2a(1)                            ----------->GT1--------->ANAC46      <------MYB46(1)     --------->HSFC1(2)                          =======================HOX2a_HOX2a --------->ANAC58=     <---------HSFC1(2)         <---------ZAT14  <------ZmHOX2a(1)====================HOX2a_HOX2a --- --------WRI1     --------->At4g35610            ========================HOX2a_HOX2a--------->ANAC58- ------->DOF2  <---------At4g35610      <---------DOF5.7(2)    <---------At4g35610  <---------TOE2(3)   caaaggaaggatcttgaagcagatcagacttgagaacagagtaaacgtcgaggaaggttgatttcagatccgccattgataggatcaaggaaggtgtgca  9650900                                                                     --------------->AGL15                                                                     <----------DOF2                                                                    <-----------------AGL3                                                                <---------ANAC46                                                                <---------ANAC58                                                                <---------ANAC58                                                             ----------->HVH21                                                            <-------MYC3                                                            ------->MYC3                                                           <---------TGA1a                                                           =====================bZIP_DOF                                                           --------->bZIP60(2)                                                           <---------bZIP60(1)                                                           <---------O2                                                           --------->O2                                                           --------->TGA1a                                                           =====================bZIP_DOF                                                           --------->bZIP60(1)                                                           <---------ANAC58                                                           --------->ANAC55(2)                                                           --------->ANAC46                                                           <---------ANAC46                                                           <---------ANAC55(2)                                                           --------->ANAC58                                                           --------->ANAC58          --------->ARR14(2)                               <---------ANAC58          <---------ARR14(2)                               <---------bZIP60(2)       --------->ALFIN1                                 ----------->HVH21 <---------------AGL15                                 <-----------TGA1<---------AHL20(2) ---------------->AGL2                                 <-----------HVH21 ---------------->AGL1                     <---------YAB1------------->DYT1 ---------------->AG                    <------ZmHOX2a(2)<-------------DYT1 -----------------AGL2              --------->TOE1(1) <---------ANAC55(2) -----------------AGL3              --------->TOE2(1) --------->bZIP60(1)           <-----------RAV1(1) ------>ANAC58                     --------->LBD16    --------->ANAC55(2)       <---------DAG2 ----->DOF2      <---------WOX13(1)<---------LBD16    --------->ANAC46 --------->AHL20(2)        <--- ====================================================================================MADS_MADS ------ ------>ANAC58<---------YAB1       ------>ZmHOX2a(1)  <---------bZIP60(1)       <----------DOF2<----- ---------------->AGL3 *TSS  --------->ALFIN1    <---------CCA1(2)  <-----------------AGL2    -------   aagccaaatgtggaacctgattgttttaagtgtgttcctcggatcatgcttatatcgcgtcacgtgacgttctttaaatgggctttttgtggcccattta  9651000     <---------RAP2.6(3)    --------->DEAR3(1)                                  ----------->GT1    --------->RAP2.3(2)                    <---------------AtSPL3    <---------ANAC46             ----------->GT1<---------ANAC55(2)    --------->RAP2.3(3)        <---------ZAT14  --------->ANAC55(2)  <---------At4g35610          --------->ZAT14 ------->TEIL ---------CBF              <---------------AtSPL8 ----------->HVH21 --->AHL20(2)      <---------CCA1(2)    --------->AHL20(2) ----AHL20(2)<---------ANAC58  <-------TEIL<---------------AtSPL8 -->AHL20(2) <---------ANAC58  --------->ZAT18 <-------TEIL             <-----------GT1          <---   attgagccgtctaaggcctgcttatctcagaagtacagtatataaaatgtacgtgaaatggggaaaacatttttaaacaactctaaacccctaattttgt  9651100                                                          --------->GLK1(2)                                                         <---------ARR14(2)                                                         --------->ARR14(2)                                                         <---------GLK1(2)                                                        <---------HSFB2a(1)                                               <------MYB46(1)                                               <------MYB83                                              --------->MYB111(1)                                              --------->MYB59                                           <---------ARR14(2)                                           --------->ARR14(2)                                           <---------GLK1(2)                                        <---------------AGL15                                        --------------->AGL15                                       -                                       ----------------->AGL2                                    <---                                       ----------------->AGL1                   --------->ARR11(3)  <                               <---------ARR11(3)       --------->HSFB2a(1)     <---------ARR11(3)  <                   --------->bZIP60(1) <-----------------AG               <---------At4g35610  <-----                   <---------bZIP60(1) <-----------------AGL1         <---------ARR14(2)       ------                   <---------ETT(2)    ==============================================================                   <----------ID1 <----------DOF2      ----------->ARR10  --------->At4g35610  ------                ----------->TGA1 ------>ZmHOX2a(2) <------MYB46(1)    --------->ARR14(2)<---------GLK1(1)              ==========================HOX2a_HOX2a<------MYB83  --------->STY1(1) <----------DOF2--- ---------CBF <------ZmHOX2a(1)--------->ARR11(3)<--------P   --------->ZAT6----------->HVH21<-------   attgcagagtttcaaaggatgacgacaatgtctgatctttcaccagatttggtaggggagattctcactagggttccgatgacatctttgatttcagtac  9651200        --------------->AGL15        <---------------AGL15       <-----------------AGL3     --------->AtLEC2  ------->TEIL -------->ZAT14 ------ANAC46 ---------ZAT18                                ---------->DOF2 ---------ZAT14       <----------DOF2    <---------AHL20(2) ----ZAT14         --------->ANAC58  <---------RVE1(1) --->SPL7          --------->ANAC58  <---------CCA1(1) =======================MADS_MADS   --------->ARR11(3)                                 <---------GLK1(2) --->ZAT14    --------->ALFIN1     ----------->GT1      --------->ANAC58            <---------WOX13(1) ------------>AtSPL8  <---------DAG2<---------ARR11(3)  --------->ANAC58         <---------YAB1   <-- --SPL7----------------->AGL1---------->DOF2<----------DOF2              --------->ARR14(2) <--------   ggtgtacttgcaaaatgtggaacgctttatccaaagaaggtattttctttaaagcagcaaggaagcagtttatgggattcacgatgatggattctagggt  9651300                             --------->LBD16                            --------->ANAC46                         <---------ARR14(2)                         --------->GLK1(2)                         --------->ARR14(2)                        <---------GLK1(1)                     --------->ANAC46         <----------DOF2              --------->ARR11(3)    --------->MYB46(3)              <---------ARR11(3)    <---------MYB52(2)     <---------ATHB12--------->ANAC58  ------->TEIL             --------->DAG2 -------MYB46(3)------>ZmHOX2a(2) --------->MYB52(1)           ---------->DOF2 -------------WRI1   --------->ANAC58------->GAMYB     ------>ZmHOX2a(2)                            -   ttgttcaatgaagtttgatctccaaggaatccgaaacaacgaacatgactttgttgatccatgtataaagcaaattgctaaacttgatcaaatcgaggta  9651400  Previous    Next  AGI:  At4g17190.1    Description:  FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2); dimethylallyltranstransferase/ geranyltranstransferase. Identical to Farnesyl pyrophosphate synthetase 2 (FPS2) [Arabidopsis Thaliana] (GB:Q43315); similar to FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1), dimethylallyltranstransferase/ geranyltranstransferase [Arabidopsis thaliana] (TAIR:AT5G47770.1); similar to farnesyl pyrophosphate synthase [Malus x domestica] (GB:AAM08927.1); similar to farnesyl diphosphate synthase [Hevea brasiliensis] (GB:AAM98379.1); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase (InterPro:IPR008949) Range:  from: 9648538    to: 9650923    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g17200.1    Description:  F-box family protein. Identical to Putative F-box protein At4g17200 [Arabidopsis Thaliana] (GB:Q9M0M7;GB:O23563); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G13680.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 9651119    to: 9652264    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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