Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     --------->At4g35610                                   ----------->RAV1(2)                                 <-------PIF5                    --------->At4g35610                                 --------->DEAR3(1)           <---------At4g35610                                 --------->MYB46(3)           --------->At4g35610                                --------->DEAR3(2)      <---------At4g35610                               ------->TEIL             --------->At4g35610                            --------->AtLEC2          <---------ZAT14                ----------->RAV1(2)                         --------->WRKY18(1)          --------->ZAT14              <---------ALFIN1                        --------->ARR11(3)         <---------DEAR3(2)            <---------ALFIN1                        <-----------HVH21         <---------DREB2C(2)      <---------GLK1(1)                      --------->DAG2              <---------DEAR4(1)       --------->GLK1(1)      ---  <---------ALFIN1    --------->MYB59             <---------At1g77200    --------->ATHB12     ------- ->ZmHOX2a(1)     --------->YAB1<---------LBD16   <---------DEAR3(1)    <---------YAB1 --------->LBD16 --YAB1          <---------ATHB12------->PIF5     --------->ETT(1)      --------->ICU4 ------>ZmHOX2a(1)   agccccaaattcaacaccaatggtaaggtcatgcaccggctgaaacctcttgtcggtgaactgaagcagaagacatgatttccccactcctgaaaatcag  9646000                                                                                 --------->AGP1                                                                                <---------At4g35610                                                                                --------->At4g35610                                                                             <-------TEIL                                                                           <---------GLK1(2)                            <---------GLK1(2)                      ----------->HVH21                           --------->HSFC1(2)                    --------->CCA1(2)         <---------                           <---------HSFC1(2)                   <---------ARR14(2)         <---------DAG2                        ---------->DOF2                  --------->DAG2    <---------ARR14(2) ------>GLK1(2)        --------->AtMYB61     --------->ARR14(2) --------->ARR14(2)<------ZmHOX2a(2) -->YAB1         <---------ICU4    <---------ETT(2)     ---------->DOF2    --------->ARR14(2)   aatcaatatacaaaaatcaacatcaccaaagcttctctcgacccctaaatccactaaaaaaagttggatatgacacagattcagatcaattcgcttttca  9646100                                                                  <---------At4g35610                                                                  --------->At4g35610                                                              <---------ANAC55(2)                <---        ------->GAMYB                                        <---------TOE2(3)                 ------       --------->ANAC58                                     <---------DOF5.7(2)               -------       --------->ANAC58                                     --------->MYB52(1)        --------->ARR14(2)  --------->ANAC46 <---------TOE2(3)                      --------->ARR11(3)    -------->P --------->DEAR3(1) -DOF2 <---------MYB52(2)      --------->At4g35610       --------->YAB1    <------ZmHOX2a(1)  <------   attttcgcaacgaaacatatataggttttgatcatctcaattccaaatggattgaagaaagataacgtagcagagaaggagttaccagtatcgccgatga  9646200                                                           <-----------RAV1(2)                                                      <---------TOE2(2)                                                      <---------TOE1(2)                                                     <-----------RAV1(2)                                                    --------->LBD16                                                   --------->ANAC46                                                  <---------LBD16                        --------->ARR11(3)      <---------ARR14(2)                  --------->YAB1                --------->ARR14(2) ------YAB1     --------->ANAC58                --------->GLK1(2)                              <----- --->YAB1       --------->ANAC58              <xxxxxxxxxxxxxxxxsmallRNA(i)                   -------- -->ICU4      --------->CCA1(2)           ----------->GT1 <-------TEIL            <----------DOF2 ---ATHB12  --------->CCA1(2)           --------->GLK1(2)<-----------HVH21<---------GLK1(1) ---------   tgatatacttgaagagataagcataagacattgaatttgaagaatcgaaaaatccgcaggttcaggcgaaaaatcgaattccttctttaagacgatgatg  9646300                           ==========================================================================                           --------------->AGL15                           <---------------AGL15                        <-----------GT1                   <----------DOF2                <---------ARR14(2)                                           *TSS                --------->ARR14(2)                         --------->HSFB2a(2)                    <<<                --------->GLK1(2)                          <---------HSFB2a(2)   ------->TEIL     <<<                <---------ARR11(3)           ------------>AtMYB77          <-------TEIL       <------NtERF2                <-----------ARR10            --------->MYB52(1)  --------->ARR14(2)          ------>NtERF2 ----YAB1       --------->ARR11(3)          ----------->HVH21    <---------ARR14(2)         <-------- ->YAB1        <---------GLK1(2)---------->DOF2   <---------MYB52(1)--------->TOE1(2)  <------------CBF >ICU4         <---------ARR14(1)          <---------WOX13(1)   --------->GLK1(1)-------->P ---------   agaacgagaagagaagagaatctttttttctctataaagacggagattgacggtttgttttccagcaaatccagcgatgcatcaacctgtattgtcgcca  9646400                                        <---------WOX13(1)                                        <----------DOF2                                  <---------ALFIN1                                 --------->ZAT14                                 --------->ZAT18                                 <---------ZAT14                                ------->GAMYB                             --------->ARR14(2)     <---------AHL20(2)                             <---------ARR14(2)     --------->AHL20(2)                             <-----------GT1<---------ANAC46   --------->ANAC58                     ------>ZmHOX2a(1) <---------ANAC58        --------->ANAC46          --------->DAG2 ------------>CBF  ----------------->AGL1----------->HVH21     <----------ID1           ---------->DOF2 ====================================MADS_MADS  --------->AHL20(2)  --------->AtLEC2 --------->YAB1 < <<<<<<SARD1       ----------------->AG<---------ANAC58        --------->ANAC58    <---------AHL20(2) <<<<<<CBP60g      ===============================================MADS_MADS        --------->AHL20(2) -ETT(2)      <---------ANAC58 --------->MYB46(3) <---------------AGL15           --------->YAB1   -- >ETT(2)      <---------ANAC58<---------At5g28300 --------------->AGL15          ----------->TBP   --   aatttcaatctctatgtcgtttcctatttagtaaccgcactgcttgacgtttatttaaatagaaaacgacatgcagtctgtttataaaaataaagctgta  9646500                                                                     --------->At4g35610                                                                     <---------At4g35610                                                                 <---------REM1(1)                                                                 --------->ALFIN1                                                               <------MYB46(1)      --------->DAG2                  ----------->GT1          <------MYB83     ---------->DOF2                <---------ZAT14           <---------AtMYB61  ----------->TBP                 <---------ZAT2             <--------P ----------DOF2                   --------->At4g35610      <---------REM1(1) ------->TOE1(3)                  <---------At4g35610      --------->ALFIN1 ------->TOE2(3)*TSS      --------->LBD16   ---------->DOF2<---------ANAC46<----------DOF2       ----   acctttaaaaagttgctatctttgcacccgagagagagctcagtgaaaaagatgggaagcggtgtaggtgtagctctctttgccctctcccttcttctcg  9646600                                                                                        --------->ANAC58                                                                                      ---------->DOF2                                                                                    ------>ZmHOX2a(1)                                                                                    =================                                                                              --------->ARR11(3)                                                                              <---------ARR11(3)                                                                              <---------ARR14(2)                            <---------ZAT14                                   --------->ARR14(2)                            --------->ZAT18                                   <---------AGP1                            --------->ZAT14                                   <-----------ARR10                         <---------ANAC46                                   <---------MYB46(3)              --------->At4g35610                                        <---------MYB46(3)             --------->ARR14(2)        --------->HSFB2a(1)              --------->ALFIN1--------->ANAC58             --------->GLK1(2)         <---------HSFB2a(1)              <---------AtMYB61         --------->ALFIN1<---------ANAC58                        ------>MYB83<---------CCA1(2)       <---------ANAC46  <---------ANAC58                    --------->ARR11(3)<---------GLK1(1)   <-       <---------bZIP60(2) ----------->HVH21                 <---------ARR11(3)--------->GLK1(1)  --- ------>ARF1 <---------ARR14(2)  <---------LBD16  <-----------GT1------>MYB46(1)------>ZmHOX2a(2) <--   tctcccatgaggtggaatctgcaatcggcgtgaactggggaacgttgtcatttcacaagatgagaccttccacagtggtggatctcctcaaagcaaacaa  9646700                                                                           ------>ZmHOX2a(2)                                  <-------TEIL--------->DOF5.7(2)       --------->ATHB12              <---------DAG2    <---------GLK1(2)                       -------->HAHB4              <----------DOF2   --------->ARR14(2)                     <---------YAB1        <---------REM1(1)       <---------ARR14(2)                     --------->ICU4        --------->ALFIN1       <---------At4g35610       --------->HSFB2a(2)   --------->GLK1(1) =====HOX2a_HOX2a              --------->At4g35610 <---------------AtSPL8  ================HOX2a_HOX2a -----ZmHOX2a(2)          <---------ARR14(2) <----------DOF2      --------->ANAC58 ------>ARR11(3)          --------->ARR14(2) <-------GAMYB        --------->ANAC58   --------->MYB52(1) -------ARR11(3)          --------->GLK1(2)  --------->TOE2(3)    --------->ANAC46  ------>ZmHOX2a(1)   gatcaccaaggtgaagcttttcgatgcgaatccagatgcgcttcgagcgttaatgggtactggaatccaagtaatgatcggcattcctaacgagatgctc  9646800                                                                         <---------ARR11(3)                                                                      --------->ANAC55(2)                                                                      <---------ANAC55(2)                                                                      <------MYB46(1)                                                                      <------MYB83                                --------->RVE1(1)           <---------At4g35610                               --------->ARR11(3)           --------->At4g35610                               --------->GLK1(2)--------->ANAC58     --------->MYB111(1)  <---------ARR14(2)                               <---------ARR11(3)     --------->MYB52(1) --------->ARR11(3)           <---------YAB1--------->ANAC58       --------->ANAC58     --------->MYB59      --------->ARR14(2)  <----------DOF2        --------->ANAC58 <----------DOF2  --------->ALFIN1 <----------DOF2        <-   tcaactttcaattctgatttgtttgtccagcaaaatctctctcgcttcataggcaaaaacggtgctgatattaggtatcttttctctcagagtatatgtg  9646900  Previous    Next  AGI:  At4g17170.1    Description:  AT-RAB2 (Arabidopsis Rab GTPase homolog B1c); GTP binding. similar to ATGB2/ATRAB2C/ATRABB1B (GTP-BINDING 2), GTP binding [Arabidopsis thaliana] (TAIR:AT4G35860.1); similar to RAB2A [Lotus japonicus] (GB:CAA98165.1); similar to unknown [Populus trichocarpa] (GB:ABK95459.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579) Range:  from: 9644724    to: 9646377    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g17180.1    Description:  glycosyl hydrolase family 17 protein. similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT4G31140.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40471.1); similar to glycosyl hydrolase family protein [Brassica oleracea] (GB:ABD65105.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82722.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490); contains InterPro domain X8 (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, catalytic core; (InterPro:IPR013781) Range:  from: 9646516    to: 9648306    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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