Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <------NtERF2                        --------->LBD16                        ------>NtERF2                       <---------ANAC46                       --------->RRTF1(2)                       ----------->RAV1(1)                       --------->RAP2.3(3)                       --------->DEAR3(1)                       --------->RAP2.6(2)                       --------->RAP2.3(2)                      <------NtERF2                 ---------->CDC5                         --------->ANAC46              <---------HSFC1(2)                      <---------ARR14(2)              --------->HSFC1(2)                      --------->ARR14(2)             ------->TEIL                           <---------MYB52(1)          --------->ANAC46                         --------->LBD16          --------->ANAC58                       <---------LBD16          --------->ANAC58   --------->ANAC46   ------>ZmHOX2a(1)       <---------SPL7 --------->DEAR4(2)   <---------ANAC58       --------->LBD16--------->ATERF1(1)  <---------ANAC58     <---------LBD16  --------->ORA47(2)  --------->HSFB2a(1)       --------->ANAC58   <---------ARR14(2) --------->RAP2.3(1) <---------HSFC1(2)        --------->ANAC58   --------->GLK1(2)  --------->RRTF1(1)  <---------HSFB2a(1)     ---------->DOF2             -------   --------->ARR14(2)<---------RAP2.3(1)  --------->HSFC1(2)  ---------->DOF2---------->DOF2  -------   aagcgattccgcacgaagcttagcgccgcataagtcactagagatgcttcctccggtatacggcgaaagaaagccattcgaaagagaagctctgagagat  9589200                                                                  --------->ZAT2                                 <---------ANAC58           <---------SPL7                                 --------->ANAC55(2)        --------->TOE1(2)                                 <---------ANAC55(2)       <---------ANAC58                                 <---------ANAC55(1)       <---------ANAC58                        ------>ZmHOX2a(2)                  <---------ANAC46                       <------ZmHOX2a(2)                  --------------->AtSPL3                       <---------GLK1(1)                 ------>NtERF2                      <---------AGP1--------->REM1(2)    <---------TGA2(2)                      <---------ARR11(3)                --------->WRKY12          <-----------ARR10      <---------ANAC46       ------------------>SPL14          <---------ARR11(3)     <---------ANAC58       ----------->HVH21                          <-          --------->ARR11(3)--------->At4g35610       --------->At4g35610                          <-          --------->GLK1(2) <---------At4g35610  <----------TaMYB80                                -- -->At4g35610         --------->ARR11(3)        <---------KAN4(2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -->CCA1(2)          <---------CCA1(2)        ----------->GT1 --------->SPL7                       --   gaagatgaagaaaatctcggtttagatctcagattacgtgtagaagacgggataatcgctgacgtacgagctcgaagcgttgtgaagctcgtcgcagtcg  9589300                                                                           <------ZmHOX2a(2)                                                                          --------->ARR11(3)                                                                          <---------ARR11(3)                                                                          --------->ARR14(2)                                                                      <---------DOF5.7(2)                                                                    --------->DOF5.7(2)  --------->At4g35610                                        --------->ANAC46  <---------At4g35610                                        --------->LBD16------>ZmHOX2a(2) --------ZAT2                                                --------->ANAC58        --------->ARR14(2) --------At4g35610                           ---------->DOF2 --------->ANAC58    *TSS<---------ARR14(2) ------->At4g35610   <-----------RAV1(1)--------->DAG2 ----------->HVH21  <---------ARR14(2) ------->ZAT2      <----------DOF2   ---------->DOF2  <-----------HVH21  ------->GAMYB              -   ctgctgctacctccatttcttctttgttgcagagagagagaaagagtgaaagtccctgtgaccccgaaacgataacgatctgtctcaaatcgggcttcat  9589400                                                                --------->ARR14(2)                                                                <---------ARR14(2)                                                              --------->LBD16        ------>MYB83                                  <---------REM1(1)         <---------LBD16          ------>MYB46(1)                              <---------ATHB51         <---------AHL20(1)       <-----------GT1    <---------YAB1            <---------ATHB12         --------->AHL20(1)    --------->YAB1  --------->AHL20(2)      ------------>CBF             --------->ARR11(3) --------->YAB1        ----- -------->TOE2(3)--------->MYB46(3)                    <---------ARR11(3)<---------YAB1<---------ATHB12   aacattatttatgggctcaacaaataggcccaatagttgtagttttttttctctgaaaatattccggtttcgactataatagtaaccaaatcaaaccgaa  9589500                                                                                        <-----------RAV1(1)                                                                                      *TSS                                                     ------>MYB46(1)                  ----------->RAV1(2)                                                     ------>MYB83                     <---------At4g35610                                     <---------AHL20(2)                 --------->At4g35610<---------ANAC58                                    --------->AHL20(1)     <---------AHL20(2)         --------->At4g35610     --------->LBD16                <---------AHL20(2)  --------->AHL20(2)        --------->GLK1(2) <    <---------LBD16                 --------->AHL20(2) --------->AHL20(2)  --------->ZAT14 <---------ANAC46   <---------LBD16                  <---------AHL20(1) <---------AHL20(2)  <---------ZAT14 <---------ANAC58 ------>GT1                 ----------->GT1        <---------MYB59  --------->ANAC46--------->YAB1<--   gtaaaaccgggaatttctcatttttcgaaaacgtataatttaatatgaggctaccaaataaataatctactggccactgcagagaatcatctgtcgtgtt  9589600                                                                                        --------->ZAT14                                      <---------YAB1                                   <----------DOF2                             <---------YAB1                                 ---------->DOF2                            --------->AHL20(2)                         <---------At4g35610  <---------MYB46(3)      <---------RVE1(1)                  <---------MYB52(2)        <---------DAG2 ---------MYB52(1)       <---------GLK1(2)      --------->TOE2(3)      --------->At4g35610 --------->ANAC55(2) -------YAB1             --------->ARR11(3)     --------->TOE1(3)--------->ZAT6    <------ZmHOX2a(2)   ctgtttgttctcacttctcacttctcagatttttataaacatgaatgaaacctgaattgttccactaactctcagcaaaaatgcgatcactttacttaat  9589700                        ------->TEIL                        <---------ARR11(1)                  ----------->GT1                        <---------ARR14(2)              --------->ZAT18                     --------->ANAC58                   --------->ZAT14                     --------->ANAC58                   <---------ZAT14                <---------------AtSPL8                  <---------ARR14(2)    <----------DOF2 -------                <---------------AtSPL3                  --------->ARR14(2)   --------->HSFC1(2)           <---------YAB1        <---------GLK1(2)   <---------ANAC46        --------->HSFB2a(1)        <---------MYB52(1) <----------DOF2      <----------DOF2              <---------HSFC1(2)   <--        <---------YAB1  --------->ARR14(2)   <---------ARR11(3)              <---------HSFB2a(1)  ---       --------->TOE2(3)--------->GLK1(2)    --------->ARR11(3)         --------->YAB1      <--------   cgtcttcatcgttattagtaagtacgaatcttttagattcttctcaagttcttttgagtatactgtgaaactaatcagaactttcttatttgttatcaaa  9589800                                                                                                 ----                                                                                                 <---                                                                                                 ----                        --------->ATHB12                                                 --------->ANAC58                       <---------YAB1                                                    --------->ANAC58                       ----------->HVH21          <---------MYB46(3)             --------->ATHB12----              --------->HSFB2a(2)          --------->DEAR3(1)                    <---------AHL20(2) --->DOF2     <---------HSFB2a(2)        ------>NtERF2                          --------->AHL20(2) -------ARR11(3) --------->DAG2         --------->DEAR3(1)                --------->ANAC58    ------- ------>ARR11(3)---------->DOF2        <---------At4g35610                --------->ANAC58    ------- -YAB1---------->DOF2  --------->ICU4---------->CDC5                     ------->TEIL  ---------->DOF2   ggtcttgttaaagcttcgaaaagcgatgatgggttttgttcagcgccttcgattgttgaatcggatgagaagacgaaccccatttattggaaagccacga  9589900                                                         <---------AHL20(2)                                                       <---------YAB1                                                  <---------ZAT6                                                <---------ANAC58   <---------ALFIN1      --------->ANAC58       <---------ANAC58                         <---------WOX13(1) ----->GLK1(2)           --------->ANAC58       <---------ANAC46                       --------->ATHB12 ------ARR14(2)          --------->ANAC46      <-------TEIL                       <---------TOE2(3) --->TEIL        --------->ANAC46            <---------GLK1(2)               <---------MYB46(3) ----->ARR14(2)  <---------ALFIN1           <---------At4g35610            <---------ANAC58 -->ANAC58   ------>ZmHOX2a(1)              <---------ZAT2---------->DOF2  <---------ANAC58 -->ANAC58   <-----------HVH21              --------->At4g35610       <----------DOF2 <---------YAB1   atccaacactctctccttcacacctccaaggcaagtgttttcttacagcttcgtgttattaaaagtttgatacttttgctggttaagtttgattgctgtt  9590000                                                                    <---------------AGL15                                                                    <----------DOF2                                                             <---------TOE2(3)                                                             <---------YAB1                                                             <---------TOE1(3)   <---------AHL20(2)                              <---------WOX13(1)       --------->DAG2 --------->AHL20(2)                            --------->ATHB12          ---------->DOF2 <---------AHL20(2)              <---------ARR11(3)               --------->ARR11(3)   --------->TOE2(3)              --------->ARR11(3)       <---------TOE2(3)----------->GT1      <---------ZAT6    <-----          <---------TOE1(1)<---------YAB1    <---------TOE2(3)      --------------->AGL15     <------   tttatcaattgttcgaggtcttgttgtatatgattgattttgagattaagttattgaaaagttaagattactttaattagtgtttaatctgagagggttt  9590100  Previous    Next  AGI:  At4g17040.1    Description:  ATP-dependent Clp protease proteolytic subunit, putative. Identical to ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplast precursor (CLPR4) [Arabidopsis Thaliana] (GB:Q8LB10;GB:O23548;GB:Q8RXG1); similar to ATP-dependent Clp protease proteolytic subunit, putative [Arabidopsis thaliana] (TAIR:AT1G09130.1); similar to ATP-dependent Clp protease proteolytic subunit, putative [Arabidopsis thaliana] (TAIR:AT1G09130.2); similar to unknown [Populus trichocarpa] (GB:ABK93479.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) Range:  from: 9585724    to: 9589381    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g17050.1    Description:  transcription factor. similar to unnamed protein product [Vitis vinifera] (GB:CAO17811.1); contains InterPro domain RmlC-like jelly roll fold (InterPro:IPR014710); contains InterPro domain Cupin 2, conserved barrel (InterPro:IPR013096); contains InterPro domain Cupin, RmlC-type (InterPro:IPR011051) Range:  from: 9589586    to: 9592606    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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