Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    <---------------AGL15                                                                                  --------------->AGL15                                                                                 <-----------------AG                                                                               --------->ARR14(3)                                                                               <---------ARR14(3)                                                                               <---------ARR11(3)                                                                               --------->ARR11(3)                                                                              --------->CCA1(1)                                                                            <---------GLK1(2)                                                                      <---------YAB1          <------        ----------->GT1                   <---------TOE1(2)       --------->YAB1 <-----------------AGL2 -------MYB52(1)                         ------>ZmHOX2a(1)    --------->LBD16 --------->RVE1(1)------ ---->ID1                       <-----------GT1               ------>ZmHOX2a(1)<---------ARR14(2) -----GT1                      <---------CCA1(2)            ----------->RAV1(2)--------->ARR14(2) --- --------------ANAC81       <----------DOF2           ---------->ID1 --------->AHL20(2)  ----------->GT1   gttttttgttttgtaacatagcattatgctcttttatcttgtcctatgtaaattttgtcttctcctgataatattatagaatatcttgatatggttatca  9556600                                                                                                    <                                                                                     <---------AHL20(2)                                                                                     <---------AHL20(1)                                                                                     --------->AHL20(2) ---YAB1                              <---------TOE2(3)        --------->TOE2(3) <---------YAB1   --- --->YAB1 <---------AHL20(2)      --------->TOE2(3)<---------YAB1    <---------ICU4  --------->AHL20(1) ------>AHL20(2)                ------->TEIL    --------->TOE2(2)    --------->YAB1 --------->AHL20(2)   taaattttctgttaaatttacagaaaacaaaatgaacattaatgttctaacatatgaatggctaacatcagtaatgacctgttctaataaatttgatatg  9556700                                                                                        ------>ZmHOX2a(1)                    --------->ARR14(2)                                                 --------->ANAC46                    <---------ARR14(2)                                              --------->ARR11(3)                --------->LBD16                                                     <---------ARR11(3)               ----------->GT1                                                      --------->ARR14(2)               <---------ANAC55(2)                                                  <---------ARR14(2)            ------>MYB46(1)                                                   --------->YAB1            -------->P                                                        <---------ICU4          --------->AtMYB61          --------->ZAT6                          --------->ICU4       <-----------GT1            --------->ARR14(2)    --------->AHL20(2)   <---------YAB1     ----- ------NtERF2  <---------ANAC46------>ZmHOX2a(2)  ---------->DOF2            <---------ATHB12  ====== ------>PCF5------>MYB83  <---------WOX13(1)  <----------DOF2   ---------->DOF2 <---------YAB1 ------   gccccttaaaaaccatcccgtgaatccgattgatcgtttccactatgtctttaaaagaataaatataaaaggcattgtaatcataatatcctccatttcc  9556800                                                                                       --------->AHL20(2)                                                                                       <---------AHL20(2)                              --------->YAB1                         --------------->AGL15      <-----------GT1    ------>MYB83                               ----------------->AGL1 --------->YAB1 --------->AHL20(1)      ------>MYB46(1)                            ================================= <---------AHL20(1)    --------->TOE1(2)                            ----------------->AG--------->WOX13(1) --------->ARR11(3)    <---------MYB59                           <----------DOF2      --------->AHL20(2) ---------->AGL15    ------->TEIL --------->GLK1(1)           <-----------GT1    <------ZmHOX2a(1) ====================================================================================MADS_MADS<------ ----------->AGL3--------------->AtSPL8  <----------DOF2<----------DOF2         ----------->GT1   atatatattgactattctatctgtacctacaatgagatttcaactttggagttttcatcttttttttctttccaatttgtggaggaaaataaatcagcat  9556900                               <------------CBF                            <---------ALFIN1                         ----------->HVH21                        <-----------HVH21                     <---------ANAC55(2)               <---------YAB1                     <---------ANAC55(1)             --------->YAB1                     <---------ANAC46                --------->AHL20(2)                     ==============================MYC_MYB                                         --                     <---------ANAC58         ----------------->AGL3                               --                     <---------TGA1a         <------ZmHOX2a(2)                                    <--                     --------->O2          ------->GAMYB                                          ---      ------>MYB46(1)<---------ANAC58     <---------ATHB12                                        <--      ------>MYB83   <---------O2      --------->TOE1(2)                             ---------->DOF2    <---------MYB59  --------->ANAC55(2)  --------->MYB46(3)                ----------->TBP --------- ===============================================================MADS_MADS  --------->AHL20(1)    ---- ---GLK1(2)         <-------TEIL      --------->MYB46(3)                   <---------AHL20(1)    *TSS   ctcatacctatccatcgactgatacgtgtcacacattgtatccaacgatccaaaattataaaacaaataatctctaatatatatccaaatagcacaaaga  9557000     <----------DOF2     <---------DAG2 ------->TOE2(3) ------->TOE1(3) -------HSFC1(2)           <-----------GT1                                                     ------ ------>HSFC1(2)        <----------DOF2    --------->ARR11(3)                        --------->ANAC58 -------HSFB2a(1)   <----------DOF2        <---------ARR11(3) <---------DAG2         --------->ANAC46 ->DOF2           <---------DAG2          <---------CCA1(2)   <----------DOF2        --------->ANAC58 --->TEIL      <---------ALFIN1--------->ZAT14             <-----------GT1         <---------ALFIN1   accttcacttttctctcccactctttcttttactactctcacacatatctctgtctatatatcactttacataaacgactattccacacacaaacacaca  9557100                                                                                         --------->RAP2.6(3)                                                                                        --------->ATHB12                                                                                        <---------ICU4                                                                                       --------->ICU4                                                                                       ----------->HVH21                                                                                --------->ZAT2                                                                                <---------At4g35610                                                                          <---------At4g35610                         --------->ANAC58                                 --------->At4g35610                         --------->ANAC46                       <----------DOF2--------->ANAC58   ---                         --------->ANAC58                <---------AHL20(2)    --------->ANAC58  ---- --->ANAC46  <----------DOF2                       <---------TOE2(3)  <----------DOF2  <---------ATHB12   tagccatggcctcttctttctcttcacaagccttcttcttgctcacattgtctatggttttaattcctttctctttagctcaagctcccatgatggctcc  9557200                                               --------->ARR14(2)                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                               <---------ARR14(2)                                         <---------ZAT2                                         --------->ZAT2                                   <------NtERF2                                  <---------DEAR3(2)                                  <---------MYB46(3)                                 <---------ANAC46                                 <---------AtMYB61                                       --------->DEAR3(1)                                 --------->ALFIN1                               <---------YAB1                                 <---------DEAR3(1)                           --------->YAB1                                 <---------DREB2C(2)                          <---------ICU4                                <------NtERF2<---------DEAR3(2)              --------->ICU4 ---------                              <---------DEAR3(1)                     <---------At4g35610 <---------ALFIN1                   <------NtERF2<---------ABI4(1)             --------->bZIP60(1)        --------->AtMYB61                  ------>NtERF2<---------RAP2.3(1)            <---------bZIP60(1)     --------->ANAC46                 --------->RAP2.6(2)--------->ALFIN1        --------->ZAT14  <---------ATHB12 -------->RAV1(2)--------->DEAR3(1)<-------GAMYB      ------>ZmHOX2a(1) ------>NtERF2 <---------ALFIN1 -->ZmHOX2a(1)--------->ANAC46<---------RAP2.3(2)  ------>ZmHOX2a(1) --------->At4g35610--------->MYB46(3)   ttctggctcaatgtccatgccgcctatgtctagcggcggtggaagctcggttcctcctccagtgatgtctccgatgccaatgatgactccaccacctatg  9557300                                                                                --------->YAB1                                                                                <---------ICU4            ------>MYB83                                                       <---------ATHB12            ------>MYB46(1)       --------->AtMYB61                            --------->ICU4          --------->AtMYB61    --------->DEAR3(1)                  <---------ANAC58          <---------ALFIN1     --------->AtMYB61       --------->AtMYB61       XXXXXXXXXXXXXXXXXXXX>MIR4227          --------->DEAR3(1)   <---------ALFIN1     --------->AtMYB61       --------->AtMYB61       --------->ANAC46       --------->MYB46(3)    <---------ALFIN1    --------->MYB46(3)       <---------ALFIN1     --------->ANAC46       --------->MYB46(3) --------->REM1(1) >AtMYB61--------->MYB46(3) <---------ALFIN1     <---------ALFIN1  <---------ANAC58     <---------ATHB12   cctatgactccaccacccatgcccatgactccaccacctatgcctatggctccaccaccaatgcccatggcttcaccaccaatgatgccaatgactccat  9557400                                           <---------ATERF1(1)                                          --------->DEAR3(1)                                         <------NtERF2                                        --------->ABI4(1)                                        --------->LBD16                                       <---------DEAR3(1)                                       --------->RAP2.3(3)                                       --------->RAP2.3(2)                                       --------->DEAR3(1)                                      --------->ORA47(2)                                      --------->RAP2.3(1)                                           <                                      --------->ATERF1(1)                                          <-                                      --------->DEAR4(2)                                           <-                                     <---------RAP2.3(1)                                           <-                            <----------TaMYB80                                             --------->ANAC46                            --------->CCA1(2)                                             --------->ATERF1(2)                            <---------GLK1(1)       <---------HSFB2a(2)                   --------->DREB2C(2)                            --------->GLK1(1)       --------->ANAC46                      <---------ATERF1(2)                           --------->ARR14(2)      <---------LBD16                        --------->DEAR3(1)                           ---------->TaMYB80    <---------SPL7                          <------NtERF2                           <---------ARR14(2) ------>NtERF2                             ------>NtERF2                         --------->LBD16<---------ATERF1(1)                             --------->MYB52(1)                        <---------HSFB2a(2)--------->At4g35610                      --------->ANAC58<                       <---------LBD16--------->ERF1--------->HSFB2a(2)        --------->PCF2      <-        --------->ANAC58<---------ANAC46------>NtERF2--------->LBD16        --------->LBD16--------->LBD16        --------->ANAC58--------->HSFB2a(2)<---------At4g35610             --------->HSFB2a(2)     <-  --------->ANAC46   --------->ARR14(2)--------->ATERF1(2)           <---------DAG2 --------->ANAC46-  --------->ANAC58   <---------ARR14(2)<---------ATERF1(2)        <-----------GT1   --------->ANAC58<  --------->ANAC58--------->ZAT6     <---------ATERF1(1)    <---------GLK1(2) <------ZmHOX2a(1)   ---   ctacaagcccaagcccattaacagttccggatatgccttcgccgccgatgccatccggaatggaatcttcaccttctccaggacccatgccaccggcaat  9557500  Previous    Next  AGI:  At4g16980.1    Description:  arabinogalactan-protein family. contains InterPro domain Glutelin; (InterPro:IPR000480) Range:  from: 9556997    to: 9557831    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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