Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     ------>NtERF2                                                                   --------->LBD16                                                                  --------->LBD16                                                                 --------->LBD16                                                              ------>ZmHOX2a(1)                                                            ------>ZmHOX2a(2)                                                           <------ZmHOX2a(2)                                                          <---------GLK1(2)       --------->YAB1                                     <---------ARR14(3)       --------->AHL20(2)                                 --------->ARR14(3)      <---------YAB1                                      <-----------ARR10      --------->ICU4                                      --------->ARR11(3)    --------->ATHB51                                      --------->ARR14(2)    <--------HAHB4                                        <---------ARR14(2)    <--------ATHB1                                        <---------ARR11(3)    --------->YAB1                                       --------->GLK1(1)    <---------ICU4                                --------->ARR14(2)                             <---   <---------ATHB51                               <---------ARR14(2)                          <------   <---------ATHB12                          --------->MYB52(1)  <---------LBD16      <-----------HVH21   --------->ICU4                            -------->P  --------->HSFB2a(1)      --------->ARR11(3) --AtSPL3                             --------->AHL20(2)----------->ARR10         <---------ARR11(3) --AtSPL8        --------->YAB1  --------->AHL20(2)   --------->LBD16            <---------CCA1(2)   ttgcaataattataaacactcatagaaatagtggaataaataaaacatacccgttccgaagatcctccccggctaaatttgatatatctgtgagagcttt  9550600                                                                     ------>ZmHOX2a(2)             --                                                                     ===========================HOX2a_HOX2a                                                                    ============================HOX2a_HOX2a                                                                    <------ZmHOX2a(2)             ---                                                                   <---------ARR14(2)             <--                                                                   --------->ARR14(2)           -----                                                                 --------->DEAR3(1)            ------                   ------>ZmHOX2a(1)         ---------->DOF2    <------NtERF2               <--------                 =====================HOX2a_HOX2a              ------>NtERF2                <--------                 ------>ZmHOX2a(2)      <----------DOF2    --------->ANAC46                <------ZmHOX2a(2)     <----------DOF2           ------>ZmHOX2a(1)           --------->ANAC58               <---------- --------GT1   --------->ARR14(2)   <---------CCA1(2)      --------->ANAC58              <------ZmHOX2a(1) ----DOF2      <---------ARR14(2)  <---------TOE1(2)     ---------->DOF2        --------->YAB1 ------   aacccatctttgtttctgatcctctggtttgtcctcgcatgtctttttaaagacatcgccaaagccaccgatctgttttctaacatgagaaggatcaacg  9550700                                                                                  --------->ALFIN1                                                                                 <-------MYC4                                                                                 <-------MYC3                                                                                 ------->PIF5                                                                                 ------->MYC4                                                                                 <-------PIF5                                                                                 ------->MYC2                                                                                 ------->MYC3                                                                                 <-------MYC2                                                                                --------->TGA1a                                                       --------->GLK1(1)        <---------PIF3(3)                                                       <---------GLK1(1)        --------->PIF3(3)                                                      --------->ARR14(2)        <---------O2      --------->MYB52(1)                              --------->ARR11(3)        --------->O2 ------->LBD16                                        <---------ARR14(2)        <---------ANAC46 ------>DEAR3(1)                                      <---------ARR11(3)      <---------ALFIN1 -------ANAC46                                        <-----------ARR10  --------->ANAC58 -->GAMYB                                             <---------AGP1     --------->ANAC58 --->ANAC46   --------->YAB1           ========================HOX2a_HOX2a--------->MYB46(3) -WRKY38(1)--------->ARR14(2)          ------>ZmHOX2a(1)------>ZmHOX2a(2)--------->ANAC46 -WRKY12 --------->LBD16 ------>ZmHOX2a(2)----------->HVH21            ===================bZIP_DOF -ARR10<---------LBD16   =====================HOX2a_HOX2a     --------->AtMYB61 <---------TGA1a --->DEAR3(1) <-----------GT1       ---------->ID1   <---------CCA1(2) ---------->DOF2     --------->YAB1   ccgtagaaaaccggaatcaccatttgatccaagtctttgtccttgtgacacttgtggatctccaccaattcattcaagcaccacgtggaagaagcatagt  9550800                        ------>ZmHOX2a(1)                      ------>ZmHOX2a(2)                                            ----------->HVH21                     <------ZmHOX2a(2)                                            --------->LBD16                    --------->ARR11(3)                                           <---------ANAC46                    --------->ARR14(2)                              <---------GLK1(2)                    <---------ARR14(2)                             --------->At4g35610                    --------->AGP1                                 <---------ZAT2--------->ANAC55(2)                    <---------ARR11(3)                             <---------At4g35610 ------>ZmHOX2a(2)                    <---------GLK1(2)              ---------->CDC5------->TEIL   <---------ANAC55(2)                   <---------GLK1(1)      <---------MYB52(1)--------->ARR14(2)   <---------ANAC55(1)-                  ----------->ARR10      <---------RAP2.6(3)<---------ARR14(2)   <---------ANAC58  --            <---------YAB1               <-------GAMYB<---------DEAR3(1)         <---------ANAC58  <-        <---------ARR11(3)              <---------MYB46(3)  --------->ICU4     ------>NtERF2 ------->TEIL   tctcagagaagataactattgagatcctcgcttctctaatggccgttataagctcatcggcgattatgcagcttctcacgatgccgtgatccatgaatgt  9550900                                                                                                  <--                                                                                            ------>NtERF2                                                                                            ---------              <---------ETT(2)                                                            <---------LBD16              --------->ETT(2)                                                         --------->GLK1(1)            <-----------HVH21                                                          <---------GLK1(1)         --------->At4g35610                               --------->ANAC46           ------->TEIL---       ------>ZmHOX2a(2)                              <-----------ARR10               <---------ARR11(1)      <---------At4g35610                             <---------ARR11(3)              <---------ARR14(2)  <---------WOX13(1)                                  --------->ARR11(3)             <---------ARR14(1) -------->ATHB12                          <---------HSFB2a(1)         <---------ANAC58--------->ARR14(2) ------->ICU4--------->ALFIN1             --------->HSFB2a(1) <---------ALFIN1       <---------CCA1(2) --------YAB1--------->WRKY18(1)       <------ZmHOX2a(1)  -------->P  <---------ANAC58<-----------ARR10   attgattgatctgcggtcgagcgcctcgattagatggctgaggaacgttttgcgaacatctaccccactgaagcttgggaaaacgtcgtatctccggcta  9551000                                                             <-------TEIL                                                           --------->ARR11(1)                                                           <---------GLK1(2)                                                           --------->ARR14(2)                                                           <---------ARR14(2)             >>>>>>>>>TBF1                                --------->HSFC1(2)          >>>>>>>>>TBF1                                   <---------HSFB2a(1) <------ZmHOX2a(1)                                        <---------HSFC1(2)                 <------- -------HSFB2a(2)--------->ANAC58                         --------->HSFB2a(1)         <---------ANAC55(2) >LBD16>>>>>>>>>TBF1                                     ----------->ARR10      ------------>CBF ------>HSFB2a(2)--------->ANAC58                   --------->CCA1(2)  ----------->GT1--------->ANAC55(2)   ctaggagaagaagaagaagaagccatgggagacgatagagagaactcagagaagagacgaagattcgtaagagaagtaaattagcaatacatattatgag  9551100                                                                                                 ----                                                                                           --------->AHL20(2)                                                                                           <---------AHL20(2)                                                                                        --------->AHL20(2)                                           <---------HSFB2a(2)                         <---------ATHB12                     <------ZmHOX2a(1)     ------>ZmHOX2a(1)                           <---------AHL20(2)                    ----------->GT1        --------->HSFB2a(2)                         <---------ATHB51 --YAB1      ---------->DOF2          <----------DOF2       <---------ALFIN1           --------->AHL20(2)   taagagagtaagagagaaagagaggagaaacttggtcttcctttcctcgaagacttggtctcccacttgatagaagacttactaaacaaataatttttta  9551200                            <------------CBF                       --------->ANAC58                   --------->MYB52(1)                   ------>MYB83                   ------>MYB46(1)                  --------->MYB55(1)                 <---------MYB59                 <---------MYB55(2)                 <---------MYB46(2)                 <---------MYB111(1)                 --------->AtMYB61                                                                 <-                 <---------MYB111(2)                                                             <---                 <---------MYB52(2)                                                     <---------WOX13(1)             --------->MYB46(3)                                            <---------MYB52(1)  <-----       --------->TOE2(3) ------------>CBF                             --------->ANAC46 <------------CBF  <---------MYB52(2)   --------->ANAC58                        <-----------GT1  <---------AHL20(2)<-- ----->ANAC55(2)--------->ANAC46<----------ID1    <---------YAB1   --------->ZAT14<XXXXXXXXXXXXXXXXXX   agtgactaacatcaaaccacctaacaagacaattgagacgaactaaactaatatgatacagaggtttactatacaccggtattttaaaagattgattttg  9551300                                                                  <---------YAB1         <-----------HVH21                                        --------->ICU4        ------->GAMYB                                          <---------YAB1       <------------AtMYB77                             <---------YAB1      <---------At4g35610                              <---------AHL20(2)      --------->At4g35610                             --------->YAB1 ------GAMYB                                         <---------YAB1<---------ICU4 ------TOE2(3)       <---------YAB1               <---------TOE2(3)--------->ATHB51 ------RAV1(1)     <---------ICU4          ----------->GT1  <---------AHL20(2) -------MYB46(3)   --------->YAB1       --------->MYB52(1)  --------->AHL20(2) XMIR866-3P       --------->ICU4 ----------->GT1  <---------YAB1--------->YAB1             <---------   tggttgtcaactgtcactgaattatgactaagtcattgtaaaaaacagaaataagattataatttatcataatttcgaggcaaatagacaaaaacgtcaa  9551400                                                                                             <-------                                                                                             --------                                                                                            ---------                                                                                       <<<<<<<<<<<<<<                                                                                      --------->ZAT18                                                                                      <---------ZAT14                                                                                      --------->ETT(2)                                                                                     --------->ALFIN1                                                                                   <---------ANAC46                  <---------CCA1(1)                                                --------->ALFIN1                 --------->ARR11(3)                                                <---------ANAC58                 <---------ARR11(3)                                                <---------ANAC58                 <---------AHL20(1)                                             --------->ALFIN1    -                 --------->AHL20(1)                       <----------DOF2       <---------AtMYB61   <             ---------->DOF2                            <---------------AGL15 <---------ANAC58 <-----   <---------ZAT18<---------RVE1(1)                     --------------->AGL15 <---------ANAC46 <----- -ID1  ------>ZmHOX2a(1)                          ----------->ARR10           <---------ANAC58 <-----   gtttgtgtcctctacaaaagatattttgaagactcaaactatctaatttgctaaaatactctttttagttttccaaagttgagtggtgtggacagtggag  9551500  Previous    Next  AGI:  At4g16960.1    Description:  disease resistance protein (TIR-NBS-LRR class), putative. similar to SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1) [Arabidopsis thaliana] (TAIR:AT4G16890.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G16940.1); similar to RPP4 (RECOGNITION OF PERONOSPORA PARASITICA 4) [Arabidopsis thaliana] (TAIR:AT4G16860.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70119.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593) Range:  from: 9546362    to: 9551026    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g16970.1    Description:  kinase. similar to casein kinase II alpha chain, putative [Arabidopsis thaliana] (TAIR:AT2G23070.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83359.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) Range:  from: 9551447    to: 9555803    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version