Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         --------->AHL20(2)                                       <---------AHL20(2)                                      --------->AHL20(1)                                      <---------AHL20(1)                                      --------->AHL20(2)                                    ---------                         --------->ANAC55(2)                                       <---------YAB1                         <---------ANAC55(2)                                     --------->YAB1  ----------->GT1       <-------TEIL  <---------AHL20(2)    <---------TOE2(3) --------->GLK1(1)    <-  <---------ZAT6  --------->YAB1----------->GT1        --------------->AGL15  <---------GLK1(1) -----   actagagttaaacaatggaatcaaaatacatattcagtaatttattttaaactctgactatttatgtaaaacacaaatggaaatcaaaattgaaggtcat  9475800                                                                  =================================HOX2a_HOX2a                                                                  <------ZmHOX2a(2)         --------->TOE2(3)            --------->TOE2(3)   --------->AtLEC2  --------->GLK1(2)                 <---------YAB1        --------->ANAC46 <---------GLK1(2)                 <---------GLK1(2)      --------->ANAC58 --------->ARR14(2)               --------->YAB1          --------->ANAC58      ----------->GT1 <---------ARR14(2)              --------->ICU4         <---------ALFIN1    --------->ARR14(2) <---------ARR11(3)---------->DOF2<--------ATHB1      ===================HOX2a_HOX2a >ARR11(3)    <---------ZAT6     <---------ATHB12     ------>ZmHOX2a(1)----------->GT1 --------YAB1 ----------->GT1<------ZmHOX2a(2)       --------->ANAC46  --------->YAB1       ------>ZmHOX2a(1) ---->ICU4<---------YAB1     ================================HOX2a_HOX2a    <---------ARR14(2)    <--   gaagattctattcttagtgtgaaaagtatagatcaatgattcttaatttcttcatcctccacgcatagatcaatggtgaatatggttttaaatcctctaa  9475900                                                                                                 ----                                                                                         <----------DOF2                                                                              <---------ANAC58   ----                                                                              <---------ANAC58   <---     <---------ZAT14                                             --------->At4g35610  <---------AHL20(2)     --------->ZAT14<---------ZAT6                      <---------TOE2(3)     <---------ANAC46   <--- -------ICU4        ----------->GT1          <---------YAB1      <---------At4g35610  <-----------GT1   tactcactgtactgccatggtagagttaaaaaaacaattttagaaatattagtggattaaggcattaagctgtccaagttgcttgtattttcttttcatt  9476000                                              ----------->GT1                                            <---------ANAC58                                            --------->ANAC55(2)             --------->DAG2                 <---------ANAC55(1)            ---------->DOF2             --------->YAB1     <---------AHL20(2)                 -------->HAHB4     --------->AHL20(2)                <---------YAB1 <---------AHL20(2)                  <---------ICU4 --------->AHL20(2)                  --------->YAB1 ----->AHL20(1)                   --------->YAB1 ----->AHL20(2)           --------->ATHB12  <---------ANAC55(2) ------AHL20(1)           <---------AHL20(2)<---------ANAC58 ------AHL20(2)          --------->AHL20(2) <---------ANAC46          --------->CCA1(2)   ttattaattaaaaaaaaagttcaactatttattgactaataataatacgtgttaaatggttatcggtttaaaatatgggccataggcccagacttgaaga  9476100                                                              *TSS                                                         <---------ATHB12                                                       --------->WOX13(1)                                                --------->ARR11(3)                                                <---------ARR11(3)                          <---------ANAC58      --------->ARR14(2)                        <-----------GT1--------------------->WRI1           <---------ANAC58  -------                    <---------YAB1 <----------DOF2   ------------>CBF       <---------ANAC58  -------           ---------->DOF2<---------ANAC58      <---------ARR14(2)        <---------YAB1      -------   aaaacttgaaacccaaagttttatttttacttgttttctttctcagtgaatatctcccaatcaagcttcttcaattttgcttgctctctctcttacacgg  9476200                            ---------->ID1                          --------->YAB1                     <---------TOE1(3)                 ----------->GT1                     <---------TOE2(3)                 --------->ANAC58                   <---------AHL20(1)               --------->ZAT2                          --------->ANAC58                   --------->AHL20(1)               --------->At4g35610                     <---------ANAC55(2)--------->TOE1(3) <---------ATHB12<----------DOF2           <---------AHL20(2)  <---------YAB1             <---------AHL20(2) -->ANAC46     <---------At4g35610        <---------AHL20(2) --------->YAB1              --------->YAB1 -->ANAC58     <---------ZAT2             --------->AHL20(2) <-----------GT1             --------->AHL20(2) -->ANAC58    <---------TOE1(2)    --------->TOE2(3)   --------->ANAC55(2)--------->TOE2(3)   -------   ccaatcggtgttttcgcagctttcaggtttgtctcaatctcaaattaaatcggagtcaagtaataacaattgataaccctaattgtttcaattatattgt  9476300                            --------->YAB1                         <---------ARR14(2)                         <---------GLK1(2)                         --------->ARR14(2)                       --------->LBD16                      <---------HSFB2a(2)                      <---------ANAC55(2)                      --------->HSFB2a(2)                      --------->ANAC55(2)                     <---------LBD16                     ------>ZmHOX2a(2)                    --------->CCA1(2)                    <------ZmHOX2a(2)                    --------->ARR14(1)                   --------->ARR14(2)                 ------>ZmHOX2a(2)                   <---------ARR14(2)    <---------HSFB2a(2)                <---------GLK1(1)                   <---------AGP1        --------->HSFB2a(2)                --------->GLK1(1)                   --------->AGP1        --------->HSFC1(1)                <---------ARR11(3)                   --------->ARR11(1)   <---------LBD16                    --------->ARR11(3)                   --------->ARR11(3) <---------AGP1--------->ARR11(3)   <---------TOE1(3)         -- --------->CCA1(2)<---------GLK1(1)<---------------AGL15                 <---------TOE2(3)   <------MYB83 ---->GT1        ----------->ARR10<-----------------AGL2          <---------AHL20(2)         <------MYB46(1)   aagatttgaaattttgcagtagatccggaatcgtattctagttctggaatcgttgatctcgatggaattttttttaagatttcttcatacacatttggtt  9476400                    <---------AHL20(2)                   --------->AHL20(2)                   <---------AHL20(2)              <---------AHL20(2)              --------->AHL20(1)              <---------AHL20(1)             --------->AHL20(2)             <---------AHL20(2)       --------->ANAC55(2)                  <---------At4g35610       <---------ANAC55(2)                  --------->At4g35610    <------ZmHOX2a(2)                <---------YAB1                        <-----------GT1   --------->ARR11(3)                --------->ICU4                     <---------ICU4   <---------ARR11(3)              --------->YAB1             --------->DAG2 -------->DOF2--------->AHL20(2)  <---------YAB1             ---------->DOF2      <---------ANAC55(2)   caaaagatcacataattttattttaatttgataagtatgatgattctgctaagtggcattggataaagttttcatttttgcaatacgtctaaacttgtct  9476500                                                                     <---------ARR11(3)                                                                   --------->ANAC46                                                                   --------->ANAC58                                                       --------->ANAC46          ------->TEIL      ---------->DOF2            --------->ANAC58                             < <---------ANAC46      <---------ANAC46       <---------ICU4       --------->ANAC58                 < <---------ANAC58      <---------ANAC58     <----------DOF2<------NtERF2           --------->YAB1  <- <---------ANAC58      <---------ANAC58 <----------DOF2--------->ANAC58 --------->GLK1(2)   <--------   atgtcttgaatgaactctctgagttgcttaaaaagtcttgtgctttctttattacacaggcctcaatacaagacattctatataagcatattgcagaaga  9476600              <---------AtLEC2              <---------ANAC46                 <---------------AGL15         <-----------RAV1(1)                  <-----------------AGL2         <---------ICU4                     --------->GLK1(2)     <---------YAB1                    ----------->GT1  --------->ARR14(2)               <---------SPL7  <---------ARR14(2)              <---------bZIP60(2)                                         <------ <-------GAMYB<---------ANAC58    <---------ANAC46                                            ------- ---------MYB46(3)                <---------ANAC58                                        --------->ZAT2 ---------DEAR3(2)                <---------ANAC58                      --------->ZAT18   <---------At4g35610 --------DEAR3(1)               <---------TGA2(2)          <---------ATERF1(1)            --------->At4g35610 -At4g35610   <---------ANAC58 ----------->TGA1<---------YAB1  <------NtERF2         <---------ICU4   ggcggttctaattgttgcatggagttgaacaatatgacgtagggaaattctaatttaggggaggcctcagagtttgcactaacttcataatcagctctgg  9476700  Previous    Next  AGI:  At4g16845.1    Description:  VRN2 (REDUCED VERNALIZATION RESPONSE 2); transcription factor. Identical to Polycomb group protein VERNALIZATION 2 (VRN2) [Arabidopsis Thaliana] (GB:Q8W5B1;GB:O23524;GB:O23525;GB:Q8W5B2;GB:Q94CF5); similar to EMF2 (EMBRYONIC FLOWER 2), transcription factor [Arabidopsis thaliana] (TAIR:AT5G51230.2); similar to EMF2 (EMBRYONIC FLOWER 2) [Arabidopsis thaliana] (TAIR:AT5G51230.3); similar to embryonic flower 2 [Lycopersicon esculentum] (GB:ABI99480.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) Range:  from: 9476162    to: 9479897    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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