Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <---------AHL20(1)                                      --------->AHL20(1)                                      <---------AHL20(2)                                      --------->ARR11(3)                                 --------->AHL20(2)                              --------->AHL20(2)          >>>>>>>>>ARR2                       <------                              <---------AHL20(2)          >>>>>>>>>ARR1                   <---------AHL20(2)                           --------->YAB1               <---------TOE2(3)          <---------ARR11(3)              --------------->AGL15--------->AHL20(2)   <---------YAB1             --------->ARR11(3)        --------------->AtSPL8--------->AHL20(1)  <---------YAB1               ---------->DOF2-------   caaactatacaatgtactatatataccaaaaataaaataatatatagacattttcattaagattgtattagtagtatctataaaagatttgtttatttta  9461900                                                                                     <---------RVE1(1)                                                                                    --------->ARR11(3)                                                                                    <---------GLK1(2)                              ----------->GT1                          --------->AHL20(2)                             --------->HSFB2a(2)                       <---------AHL20(2)                             <---------HSFB2a(2)                      <---------AHL20(2)                          --------->ARR11(3)           <---------ANAC55(2)          <---------ARR11(3)           ---------->DOF2<---------ARR11(3)     --------->AHL20(2)   <---------AHL20(1)      ------->TEIL----------->GT1       <---------AHL20(2)<---------ZAT14   <---------AHL20(2)      < ---AHL20(2)    ---------->DOF2        --------->AHL20(2) --------->ZAT14  --------->AHL20(2)       - -->AHL20(2)--------->DAG2--------->GLK1(2)     <---------ATHB12      --------->AHL20(2)   ----------   atacattgaatctaaaagtaaagttaaaaatctagaaaatataaaatcaaatgaattaagtaaactgtgtaataaaattaaaacgagatttttaaaagaa  9462000                                                                                  --------->YAB1                                                                    <---------ANAC58                                                                    <---------ANAC58       ----------                                                                 <<<<<<<<<<GT-3b  <---------ICU4 ---------HSFC1(2)                          <---------YAB1   <---------AHL20(2)   --------->ATHB12 -------->HSFC1(2)----------->GT1         <---------ICU4     --------->AHL20(2)  --------->ICU4 >DOF2          ---------->DOF2          <---------ATHB12 <---------ICU4         <---------ATHB12   gaaacatccactaagaaacaaagtaaaaaacaaaatttagaaaatcattcttcgacttcatatttatttttcttggtcgaaaaatcattactcaaaagaa  9462100   --------->AHL20(2)                                             --------->ALFIN1   --------->YAB1                                               ==================================MYC_MYB  <---------ATHB51                 <---------AHL20(2)           <---------TGA1a  <---------ATHB12            --------->TOE2(2)             <---------HSFB2a(2) >DOF2                        --------->TOE1(2)             --------->HSFB2a(2)           ------->GAMYB   accaataatatacaaaattttgacattagaaacatatgaaattgggaccctaaaattcagtttcagaagtggggagttttcaaatactataaccacattt  9462200                                                                     --------->YAB1                                                                 =======================HOX2a_HOX2a                                                                 ------>ZmHOX2a(2)                                                                 <-------TEIL                                                                ========================HOX2a_HOX2a                                                               <---------ARR14(2)                                                       <----------DOF2 <---------YAB1                                                     <---------ZAT2  <---------ICU4          --------->REM1(2)                          <---------At4g35610      --------->DAG2   ------->GAMYB            <---------ZAT2           --------->At4g35610     ---------->DOF2     ----  --------->MYB46(3)        --------->ZAT2    <-------GAMYB    --------->ARR14(2)        ------->TEIL  <---------MYB52(2)  ------>ZmHOX2a(2)      <-----------RAV1(1)<------ZmHOX2a(2)<------ZmHOX2a(1)  -   atcaacaaaccttgtagcctttgatcgcttagcagggaccttagcttctgttgtcagcttaatcggatccattataacaaaaaggacgttgaatctataa  9462300                   --------->YAB1                   <---------ICU4                --------->YAB1                <---------ICU4               --------->ICU4               <---------YAB1             -------->HAHB4             <--------HAHB4             --------->YAB1             --------->ATHB51             <---------AHL20(2)             -------->ATHB1             <---------ICU4            <---------ATHB51            <---------YAB1          <--------HAHB4          --------->ATHB51          -------->HAHB4          <--------ATHB1          --------->YAB1          <---------ICU4         <---------ATHB51         --------->ICU4         <---------YAB1         --------->AHL20(2) --------->ARR14(2)       --------->YAB1 --------->ATHB51      <---------YAB1 <---------YAB1                                                            ------     <---------AHL20(2)     ------->TEIL                                                       <-----     --------->AHL20(1)     <---------ARR14(2)                                                 ------     --------->AHL20(2)<------------CBF                                                   <----------    --------->YAB1<---------YAB1                                          <---------AHL20(2)   ------ ------->GT1--------->ICU4 <---------CCA1(2)                       ----------->GT1----------->GT1 -------->AHL20(2)--------->ICU4   <------------CBF <------ZmHOX2a(1) <-----------TBP  ---------->DOF2   gataaattataataattattattattattgtatcttcgattgagaaatgtaagaggaaaacttagaaaatggatatataatgaaatgtaaaaagagaacg  9462400      ---------->DOF2 --->ANAC58            --------->At5g28300 -----ID1 <---------ARR11(3)                                        --------->ALFIN1 ----->GT1--------->ARR11(3)                                    <---------At4g35610 -----AtSPL8          ----------->GT1  <---------ARR14(2)       --------->At4g35610           ------- --->ANAC58       ----------->HVH21    --------->ARR14(2)     <---------GLK1(1)            --------->ETT(1)   aaaaaatgaaaagaactcatgcgacggtaatatggaagctatattcgctaacatggaattttggatagctgtggagattaagttgagacctggtcggaaa  9462500                                                     --------->ALFIN1                                                  <---------AtMYB61        <---------LBD16                          <------ZmHOX2a(1)      <-----------GT1                       --------->ALFIN1     <-------TEIL                        --------->ALFIN1   <---------ARR14(2)         --------->LBD16  --------->ALFIN1                           <----------DOF2   --------->ARR14(2)       <---------LBD16<------ZmHOX2a(1)                            ------>MYB83 ----------->ARR10   --------->ARR11(3) <------ZmHOX2a(1)                               ------>MYB46(1) --->DOF2 --------->LBD16  --------->MYB52(1) <------ZmHOX2a(1)                <-----------GT1   gagtagattcaccggagaagagagataatcaccggaaaacgaggaggaggaggaggtgttgaaactcttgttttttttttgttactcaccaacttttgtt  9462600                                                                                                   <-                                   <---------AHL20(2)                                              <-                                   --------->AHL20(2)                                         <------             <---------ARR11(3)    --------->ATHB12                                  ----------->GT1             --------->ARR11(3)    --------->ATHB51                              --------->YAB1  ----             <-----------ARR10    --------->AHL20(2)                           --------->AHL20(2)<---            <---------CCA1(2)     <---------AHL20(1)                       <---------ANAC55(2)<------   --------->TOE2(3)--------->TOE2(3)                                     <-------TEIL        -------  --------->REM1(1) <---------DAG2<---------AHL20(2)                 --------->AHL20(2)       <------   atctacatcaaaacatatctcaccttatatatacaaattatttgaagtcttgttagggaatataaaaaaaaaaaaatacataaaaataagttatataagg  9462700                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   <-     --------->AHL20(2)                        --------->AHL20(2)                                <---     <---------AHL20(2)                    --------->ICU4                                        ---- -----MYB46(1)                           --------->AHL20(2)                                     <---- -----MYB83                             --------->AHL20(2)                                   -------- ---TOE2(3)                             <---------AHL20(2)                            ---------->DOF2 ----->ALFIN1              <---------------AGL15    <---------AHL20(2)      <------MYB46(1)  <------- -----P       ----------->GT1       --------->AHL20(2)          --------->ZAT6 ---------->DOF2------- ---TOE1(3)  ----------->GT1------>ZmHOX2a(1)  <---------AHL20(2)           <------MYB83 --------->YAB1 -->DAG2   ---------->DOF2 --------------->AGL15    --------->AHL20(2)  <---------MYB46(3)   <------- ---------AtSPL8    --------->YAB1----------->GT1  <---------AHL20(2)   <-----------RAV1(1)--------->CCA1(2)   tagggaattttttaaaagttaaaaataatcctatataagtaaataatttttaatttatattgactaacacttatttgttggtaaagaataaagataaggt  9462800  Previous    Next  AGI:  At4g16810.1    Description:  similar to VRN2 (REDUCED VERNALIZATION RESPONSE 2), transcription factor [Arabidopsis thaliana] (TAIR:AT4G16845.1); similar to VRN2 (REDUCED VERNALIZATION RESPONSE 2) [Arabidopsis thaliana] (TAIR:AT4G16845.2); similar to EMF2 [Dendrocalamus latiflorus] (GB:ABB77210.1); contains domain POLYCOMB GROUP PROTEIN (PTHR22597) Range:  from: 9459889    to: 9462272    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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