Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     <---------ANAC58                                                                                   <---------ANAC58                                                                <---------At4g35610--------->ANAC55(2)                                                       <-------TEIL             <---------MYB52(1)                <<<<<<<<<TBF1                       <---------At4g35610        <----------DOF2          <---------At4g35610                       <---------ZAT2             <---------DAG2      <-----------TGA1                              --------->At4g35610       --------->TOE2(3) -----    ---------->ID1          ------>ZmHOX2a(1)       --------->ZAT2 <---------At4g35610     ------>ZmHOX2a(1)   ttcttcgtcgtcatcttcttcttcatattcctcttctccatcttcgtcttctccagcttcatgctcttctgcttcgccttcctttacgtcttcctcacta  9366400                  <---------AHL20(2)                 --------->AHL20(2)            <---------ANAC46            <---------ANAC55(2)            --------->ANAC55(2)            <---------ANAC55(1)            <---------ANAC58                                          <---------ANAC58         <---------WOX13(1)                                           <---------ANAC58        <---------ANAC58                       ---------->DOF2  <------NtERF2        <---------ANAC58                     ------>ZmHOX2a(1) ------>NtERF2       --------->ATHB12                      <---------------AGL15  <XXXXXXXXXXXXXXXXXXXXMIR868      <---------YAB1            <-----------HVH21             --------->ANAC46   ------>ZmHOX2a(1)     <---------ZAT2     --------->TOE2(3)--------->RAP2.6(3)        <---------HSFB2a(2) ---->ZAT14 <---------ANAC58    <-----------TGA1            --------->MYB52(1)          --------->HSFB2a(2)   ctgtcctcttgattgcgtattaattcgagctcgtcgtcactagcatcctcaaagaagaaactcgacggcattgctagggtttaagaggtttcagaaaatt  9366500                                                          ------>MYB83                         ------                     --------->ANAC58                     --------->MYB52(1)                   ------          ------->GAMYB                                   ------>MYB46(1)                <---------ANAC55(2)          --------->RAP2.6(2)                        --------->MYB52(1)                  --------->ANAC55(2)          --------->DEAR3(1)                 ----------->GT1                             --------->YAB1      ----------->HVH21                     <---------HSFB2a(2)              <-----------GT1   ------    --------->CCA1(2)--------->ANAC58    <---------AGP1 <---------MYB59  --------->YAB1 <-------TEIL   tcagagagacgaccgcctaatcgaagcaagaggtttactaataggtctggagaaaaaaccgaaccgatttagcaaaaataaaccattcgattcgtaatct  9366600           <------MYB46(1)           <------MYB83              -------->P          --------->MYB59            ------>MYB46(1)        <---------MYB52(1)  ------>MYB83   --------->MYB52(1)    --------->MYB46(3) --->TOE2(3)    --------->ATHB12     ------>MYB83 --->TOE1(3)<<<<<<<<<<MYB80 ------>MYB46(1)      <---------At4g35610         <----------DOF2   ------ --->YAB1 <---------AtMYB61----------->RAV1(1) <-----------GT1     ----------->GT1          <--------   taaaaaaacggtttggtttgatttgaaaccaacaaaaccaacttgttttttagctccttgcattttgaaaagtttataactttgggctgggcttatgata  9366700                            <-----------GT1                         --------->AHL20(2)                         <---------ICU4                         <---------AHL20(2)                     <---------AHL20(2)                 --------->AHL20(2)                   --------->YAB1    <---------AHL20(2)<---------AHL20(2)           --------->YAB1        <---------YAB1   --------->AHL20(2)<---------AHL20(1)     <----------DOF2            --------->YAB1             <-- <---------ARR11(3)  --------->AHL20(2)  <-----------GT1    ---------->DOF2                ---------- --->CCA1(2)     <---------YAB1       <---------REM1(1) <---------YAB1*TSS                --------->ARR11(3) -YAB1           <---------AHL20(2)<---------MYB46(3)--------->ICU4   --------->ICU4      <---------ARR11(3)   caagatttaatgggcttatataattaattttttcaagttgttgtaactttgtataatgatgttaaagaaaaaatgatgatacaaaacaccaagatgttat  9366800                                                                                                -----                                                                                            <--------                                                                                   --------->GLK1(2)               ----------->GT1                                                    --------->ARR11(3)          <---------TOE2(3)                                                       <---------GLK1(2) <----------DOF2                                                                ----------->ARR10  <- -------AHL20(2)       --------------->AtSPL8                               --------->YAB1<---------AHL20(2) ->GT1  ---------->DOF2<---------------AtSPL8 --------->TOE2(3)    --------->TOE2(3)  <---------YAB1   tttctttcaaaaaaggtttgtataatgtgtacatatttagccaaaaaaacttaaaacagttttctgttttcttaactaaaataagattctgtttaatgaa  9366900                           <----------DOF2                       <----------DOF2                        ----------->GT1                 <---------AHL20(1)                   ------->TEIL     ----------->GT1                 --------->AHL20(1)               <---------TOE2(3)--------->ICU4          ---------- -->TEIL        --------->AHL20(2)        --------->ANAC58  <---------ANAC58            --------->YAB1 -TOE2(3)       --------->YAB1            --------->ANAC46  <---------ANAC58           <---------YAB1 --------AHL20(2)<---------AHL20(2)       --------->ANAC58  <---------ANAC46  --------->ICU4   tttttttttctaatggaattatattctttcttttttgtctgaacaagaaactaatgtatatagcttgtaaatatggagaaaagattactatgaaaaagaa  9367000          ------>ZmHOX2a(2)         <------ZmHOX2a(2)        --------->ARR14(2)        <---------ARR11(3)         <-----------GT1        <---------ARR14(2)   <---------CCA1(1)        --------->ARR11(3)   <---------RVE1(1)       <------ZmHOX2a(1)    <---------ARR11(3)    ------>ZmHOX2a(1)       ========================HOX2a_HOX2a        ===================================================      <------MYB46(1)       --------->ARR11(3)    <---------------AGL15               <---------ANAC58    <--------P  ---------->DOF2  <---------AHL20(2)        <XXXXXXXXXXXXXXXXXXXXMIR832-3P   <--------   --------->TOE1(2)    =================================HOX2a_HOX2a<----------ID1    <---------ANAC46 <---------TOE2(3)      <------ZmHOX2a(2)        --------->TOE2(3)  ----------->GT1   <---------ANAC58 >DOF2<------MYB83     <---------AGP1         <-----------GT1      ----------->GT1  <---------AHL20(2)   atgaaggtaggatcttaagaaagtagatcagatattttatctacattttttcctcaatctagtttggattgggaaaaaaacagtatttacttggagcaca  9367100                                                         --------->YAB1                                                        <---------ATHB12                                                       ------>MYB83                                                       ------>MYB46(1)                                        <---------MYB52(1)                                      <---------------AGL15                                     ----------------->AGL1                                    <---------ZAT18   --------->WOX13(1)             <----------DOF2                                <---------ICU4    <---------PCF5                  <---------AHL20(1)   --------->DAG2              <---------YAB1     --------->TCP15(1)              <---------ARR11(3)  ---------->DOF2              --------->ICU4     <---------PCF2                  --------->ARR11(3)- <---------AHL20(2)          --------->ATHB12     --------->TCP20           --------->TOE2(3)     <-- =====================================================MADS_MADS      <---------HSFB2a(2)    --------- -At4g35610--------->WOX13(1)<---------ICU4    --------->ALFIN1      --------->HSFB2a(2)    <--------   tatataaagtaatctatcacctatgaattagtcattagtgccattaggggtgggaccaatcatgtatagttccataaacatcaatatctttcaatttttt  9367200       --------->CCA1(2)                                                <---------ARR11(3)   <-------     --------->YAB1                                                 <---------ICU4    --------->YAB1    <---------YAB1                                               --------->YAB1      --------->ICU4 --------->ICU4                    ---------->DOF2          --------->At4g35610      <---------YAB1 -------->ARR11(3)              ------->TEIL <---------ICU4 <---------At4g35610    ------>MYB83 -------TOE2(3)        --------->DAG2     --------->YAB1   --------->ANAC58        ------>MYB46(1) >AHL20(2)            ---------->DOF2  --------->YAB1    <------ZmHOX2a(1)       <---------MYB59 -AHL20(2) --------->ANAC46  --------->ICU4  --------->YAB1--------->ANAC58      --------->TOE2(3)   gagataatgatatacacaaactcaaaaagtaatgaatcaaagaataataatcccttagaggaagctatcatcaagaccataaacctaattataagcctaa  9367300  Previous    Next  AGI:  At4g16630.1    Description:  DEAD/DEAH box helicase, putative (RH28). Identical to DEAD-box ATP-dependent RNA helicase 28 (RH28) [Arabidopsis Thaliana] (GB:Q9ZRZ8;GB:O23506;GB:Q0WRF7); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT1G16280.1); similar to Os12g0481100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066771.1); similar to DEAD-box ATP-dependent RNA helicase 28 (GB:Q0INC5); similar to unnamed protein product [Vitis vinifera] (GB:CAO60966.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains Inter Range:  from: 9362006    to: 9366770    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g16640.1    Description:  matrix metalloproteinase, putative. similar to matrix metalloproteinase [Arabidopsis thaliana] (TAIR:AT2G45040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43082.1); contains InterPro domain Peptidase M10A and M12B, matrixin and adamalysin; (InterPro:IPR001818); contains InterPro domain Peptidase, metallopeptidases; (InterPro:IPR006026); contains InterPro domain Peptidoglycan binding-like; (InterPro:IPR002477) Range:  from: 9367270    to: 9368797    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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