Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------->ANAC58               --------->O2               <---------O2                                                       <---------ZAT2               --------->TGA1a                                                    --------->ZAT2               --------->ANAC58                                                   <---------At4g35610               --------->ANAC46                                                   --------->At4g35610               ====================bZIP_DOF                                       ----------->RAV1(2)               --------->bZIP60(2)                                         ------->GAMYB             ------->GAMYB                                              <---------ARR14(2)             <---------ALFIN1                                        --------->YAB1       --------->ANAC58                                            --------->ANAC58              ----       --------->ANAC58                                            --------->ANAC58      ----------->HVH21 --------->MYB52(1)                                         <---------ANAC58    <-----------RAV1(2) ---------ARR14(2)      <----------DOF2                     <---------ANAC58<-----------HVH21   >>>>> --->ALFIN1 --------->MYB46(3)    --------->At4g35610   <----------DOF2 --------->MYB52(1)     ------   gagaaacggacacaaccacgtcttgcctttgctaagagcagagagaaactcgtctaagctttgcttctcaagcataactgtctcagctgatgtgatgcat  9271100                                                                                       <---------ATHB12                                                                                      --------->ANAC58                                                                                      --------->AtLEC2                                                                                 --------->ANAC58                                                                                 --------->ANAC58                                                                     <------ZmHOX2a(1)--------->ANAC58 ----->MYB46(3)                                                     <----------ID1    --------->ANAC46 >>>>>>>>>>>>LFY                 --------->ZAT14           --------->AHL20(2)    --------->ANAC46 ->TEIL                   --------->ZAT14              ---------->DOF2      --------->TOE1(2)   ccactgtataatcgtatacataaaccattacactctaaactctaaaactgactcagacaaagtaaatgagaggacaaacctgcaagccaagcaatccttg  9271200                                     <---------ATHB12                        <----------DOF2                      --------->At4g35610   --------->TOE2(3)                      <---------At4g35610   --------->TOE1(3)                   <---------ZAT2  --------->WOX13(1)                       <-------MYC3    ---------                   <---------At4g35610--------->YAB1                        ------->MYC3   --------->ARR11(3)        <-----------GT1<-----------------AGL2                          <------ZmHOX2a(1)   <---------ARR11(3)   agagaaattttaaccggttcaagctgctgttttggggcaatcacaaccttcaaattcaaattagcacagagaaggacacgtttagctagtgaagatatat  9271300                       <---------GLK1(1)                       --------->CCA1(2)                                                      <------                       --------->GLK1(1)                                                      -------     --------->YAB1   --------->ARR14(2)                                                      <------    <-------TEIL      <---------ARR14(2)      --------->DAG2                                  ------- <------ZmHOX2a(1)   <------ZmHOX2a(1)       ---------->DOF2                              ----------- >CCA1(2)   ---------->DOF2         ---------->DOF2                                ---------->DOF2   ataggattcataacaaaagactaggatatgctattccctaaaacacaaaaagagactaacttgaagaaagaatgaaattcaatggcaaagcatggaaatt  9271400                                                                                            ------>ZmHOX2a(2)  --------->ZAT2                                                                           --------->GLK1(1)  <---------ZAT2                                                                           <------ZmHOX2a(2)  ----------->RAV1(2)                                                                      <---------GLK1(1) <---------ARR14(2)                                         --------->ANAC58              --------->ARR14(3) --------->ARR14(2)                                  ----------->HVH21                    --------->ARR14(2) ---HSFC1(2)                                       --------->CCA1(2)                      --------->ARR11(3) -->HSFB2a(1)                                     <---------ARR11(3)                      <---------ARR14(2) ---HSFB2a(1)=====================================HOX2a_HOX2a                             <---------ARR14(3) -->HSFC1(2) <------ZmHOX2a(2)                    --------->ARR11(3)                      <---------ARR11(3) >GT1  <---------ANAC46                    ------>ZmHOX2a(1)--------->ANAC58 <---------ATHB12   tcggacctggggtcgatcagacttcttgacgatgggttttgagtccttaagagatatgacacaagcttgagacggagcaatgaaatcgttgagatctccg  9271500         <---------DEAR3(2)                                   <----------DOF2         <------MYB46(1)                                     <---------ICU4         ----------->GT1                              <-----------ARR10         <------MYB83                                 --------->GLK1(2)                       -------        <---------DREB2C(2)                           <---------ARR11(3)          --------->YAB1        <---------DEAR3(1)        <----------DOF2     --------->ARR11(3)        ----------->GT1   ---------->DOF2     ----------->HVH21       --------->TOE2(3)     <-----------------------TaNAC69(2)   agcctcaaagtcggtgaaaacttctctgacatatcgctttctattcaaaacttaaaaatctaatctttagagacgaagaaactagtataaccaaaacaaa  9271600                       <------NtERF2                     <---------ANAC46                     --------->ETT(1)                    <------NtERF2                   <-----------HVH21                                <----------DOF2                <------MYB46(1)                                    <---------ANAC58                <------MYB83--------->ZAT2                         <---------ANAC58               <---------AtMYB61     <---------ARR14(2)           <-------TEIL             <------------CBF       <---------GLK1(1)    <------NtERF2                     <---------            <------ZmHOX2a(1)   <---------ANAC46        ------>NtERF2          <------------CBF            --------->ATHB12<---------At4g35610        <---------ANAC46    --------------->AGL15          <---------TOE2(3) --------->At4g35610        --------->DEAR3(1)  ==========================    --------->ICU4<-----------RAV1(1)--------->ARR14(2)<---------DEAR3(1) <-----------------AGL1 --->DOF2 <---------TOE1(3)--------->GLK1(2)      <<<<<<<ZML2 --------->DAG2------>ZmHOX2a(1)   ggagcaaagattaaggattggtgtcggagaagctgagggtatcggaaaactagaacggcgtcgaaaggtgctttcttcctctattggttctaaaattgca  9271700                                --------->DAG2                          <--------P                        ----------->GT1                    --------->DAG2                   ---------->DOF2                <---------MYB59---------->DOF2                <---------------AGL15                                --------->YAB1                --------->TOE2(3)                                   --------->ICU4                --------------->AGL15                             --------->YAB1                --------->TOE1(3)----------->GT1          ------>NtERF2    <------------CBF               ----------------->AGL1                   <---------ANAC58 <---------YAB1               ----------------->AG                     <---------ANAC58--------->YAB1 ---CBF        <---------ANAC55(2)             <------------CBF----------->GT1          <---------MYB59 ===============================MADS_MADS ----------->GT1<---------ZAT18--------->TOE2(3)  ----------   aactggggtctcaaattacctaaaaggggttgaaaaagtcaaaaatgtaaattgcatagcgggcctagtaataatcttattgtgtaagggcctaaatgca  9271800                    ----------->HVH21                  <---------DEAR3(2)                  <------MYB83                  <------MYB46(1)                 --------->MYB46(2)                 <---------DEAR4(1)                 <---------MYB46(3)                 <---------DEAR3(1)                 <---------DREB2C(2)                <---------ORA47(1)                                                        ------->MYC3     --------->ANAC58                                                                     <-------MYC3     --------->ANAC58             --------->ALFIN1--------->YAB1                  <-----------GT1 >DOF2------------>CBF  ------------>CBF<----------DOF2         --------->TOE2(3)<---------YAB1   aatagagaagcaatagaggtcggtgacacaatgagggtgatgctttgctcaacaataagtcaataaccttggtctcgttttttatcacagcatatggcac  9271900                                                                               ------>MYB46(1)                                                                               ------>MYB83  <-------                                      <-----------HVH21                        -------->P --------->REM1(1)                                   <---------ANAC58                    >>>>>>>>>TBF1      <---------ALFIN1                                   <---------ANAC58                 >>>>>>>>>TBF1        <---------ZAT14          --------->TOE2(3) --------->ANAC55(2)                  >>>>>>>>>TBF1----------->RAV1(1)    --------->ANAC46      <-----------GT1      <-----------GT1>>>>>>>>>TBF1 --------->MYB46(3)     <-   attgacacagaacatcaatagtctagttttacatattgtttgtcacatataacatcatcaagaagaagaagaagaagaaccaacaagagcctacactttt  9272000  Previous    Next  AGI:  At4g16440.1    Description:  iron hydrogenase family protein. similar to Narf-like protein [Medicago truncatula] (GB:CAD10687.1); contains InterPro domain Iron hydrogenase, small subunit-like; (InterPro:IPR003149); contains InterPro domain Iron hydrogenase (InterPro:IPR009016); contains InterPro domain Iron hydrogenase, large subunit, C-terminal (InterPro:IPR004108) Range:  from: 9269286    to: 9271532    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g16442.1    Description:  integral membrane family protein. Identical to UPF0497 membrane protein At4g16442 [Arabidopsis Thaliana] (GB:Q8L9B5;GB:O23488;GB:Q0WQU0); similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT2G35760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41794.1); contains InterPro domain Conserved hypothetical protein CHP01569, trans-membrane plant (InterPro:IPR006459); contains InterPro domain Protein of unknown function DUF588 (InterPro:IPR006702) Range:  from: 9271878    to: 9273111    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version