Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                      --------->At4g35610                                 --------->DEAR3(1)   ---------->DOF2                              --                             xxxxxxxxxxxxxxxx>smallRNA(s)                                       ----- ------->MYB46(3)        --------->ARR11(3)--------->GLK1(1)                                    ----- --->MYB46(1)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                      ------ --->MYB83       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->CCA1(2)                        ------>MYB46(1) ----GT1      <---------ANAC58 <---------At5g28300  --------->ARR11(3)                        ------>MYB83 ->REM1(1)    <---------ANAC58<-----------GT1      --------->YAB1     <-----------GT1         -------   atccaacttcccattttcttgacaatacatcttcaccgctcgctgaattccaaagataaaggccatcagtttttgcagtccaaatgcaattcttccaacc  9215800                                                       <---------YAB1                                                      <---------ARR11(3)                     -------- ----->TEIL                                 <---------At4g35610                       <---------ANAC58 -->GAMYB                                 --------->YAB1 --------------------->WRI1   <---------ANAC46 ---->RAP2.6(2)                          <-------TEIL --------->ARR11(3)        --------->DAG2  ----- --->MYB46(3)                    ------->MYC3    <---------YAB1                ---------->DOF2  <---- ->P         <---------ARR11(3)  <-------MYC3 ----------->HVH21   ---------->DOF2     <---------ANAC58   gcatctatggaacaagataacatcatcccaaaacacgtttacattcatatgaccattatctttgttcatatagcaccaaaaaaaagttgagtgaagcata  9215900                   <---------ARR11(3)                   --------->ARR11(3)                   --------->GLK1(2)                  <------ZmHOX2a(2)     --------->LBD16                                 --------->ARR11(3) ->YAB1       --------->ANAC58                       <---------ARR11(3) ---->ARR14(2)--------->ANAC46          <---------AHL20(2)            <-----------GT1      <--------- -----ARR14(2)--------->ANAC58          --------->AHL20(2)    <----------DOF2     ---------->DOF2  <-   ttttctccgaagttccaagaaaatctatttctaaacttcagattaatttcacctagatcatcttctttagatttacaatggatgaaaagagtttcaccag  9216000                                                                         ------>NtERF2                                                                        --------->RAP2.3(3)                                                                        --------->DEAR3(1)                                                                        --------->DREB2C(2)                                                                       --------->ORA47(2)                                                                       --------->RAP2.3(1)                                                                       --------->ATERF1(1)                                                                       <------NtERF2                                                                      <---------At4g35610                                                                      --------->LBD16                                                                      --------->At4g35610                                                                      <---------ATERF1(1)                                                                     <---------ANAC46                                                                     --------->RAP2.3(3)                                                                     --------->ATERF1(2)                                                                     --------->DEAR3(1)                                                                     <---------ATERF1(2)                                                                     --------->RAP2.3(2)                                                                    --------->ERF1                                                                    --------->DEAR4(2)                                                                    --------->RAP2.6(1)                                                                    --------->RAP2.3(1)                                                                    --------->ORA47(2)                                                                    <---------RAP2.6(2)                                                                    --------->DEAR3(2)                     <---------ANAC58                               --------->ATERF1(1)                     <---------ANAC58                               <------NtERF2                  <---------MYB52(1)                               ------>NtERF2                 <-----------HVH21               --------->YAB1    <---------ATERF1(1)                 --------->At5g28300     --------->HSFB2a(2)      <---------PCF2               <------------AtMYB77      <---------HSFB2a(2)     --------->ATERF1(1)             ------->GAMYB             <---------LBD16          <---------MYB46(3)            --------->MYB46(3)      <---------HSFB2a(1)        <---------DEAR3(1)          <---------DOF5.7(2)      --------->ARR11(3)          --------->ALFIN1        --------->DOF5.7(2)        <---------ARR11(3)          <---------AtMYB61        <---------MYB52(1)        --------->GLK1(1)         --------->ALFIN1 --GT1----------->GT1<---------bZIP60(2)<---------LBD16   <---------ANAC46                     <----- ----------HVH21------->GAMYB     <---------GLK1(1)       <---------O2------>NtERF2      ----------->HVH21   ttgtcaaaccgttaacaaccgtgacttgccactcagaaatcttcgggactataatgtctctcgtggtggtgccgccgactaagacatggtcttgacatgt  9216100                                                                       <----------DOF2                                                                    --------->ARR11(3)                                                                    <---------ARR11(3)                                                              --------->ANAC58                                                              --------->ANAC58           --------->ANAC58                               --------->ANAC58         <----------DOF2           --------->ANAC58                               --------->ANAC46         <---------DAG2<---          --------->DAG2                                  --------->ANAC58      --------->ARR11(3)         ---------->DOF2                          <----------DOF2   --------->GLK1(2)      <--------- ------HVH21                                      <---------DAG2--------->YAB1  <---------ARR11(3) <-   tagggccagagaaaagcaaattgccaagagaaattgtttgatgcaattcatacttttttcaggcaagcaaaatctttagggagaacttttttgttacttc  9216200                                      --------->AHL20(2)                                      <---------AHL20(2)                                      <---------AHL20(1)                                      --------->AHL20(1)                                            <                                     <---------AHL20(2)                                             <                                 --------->AHL20(2)                                                 <                                 <---------AHL20(2)                                                 <                             <---------ANAC46                    <---------TOE2(3)               <---   <---------YAB1        <---------WOX13(1)                     --------->YAB1                  <---- --------->YAB1         <------------CBF                     <----------DOF2                   ------ -------DOF2         --------->At5g28300             <-----------GT1                        --------- --GT1      ----------->GT1 <---------TOE2(3) <---------TOE2(3)--------->ICU4             <---------AHL20(2) ----------TBP      ----------->GT1  --------->AHL20(2) <------------CBF             <---------ATHB12   tttttataatggaagagtgaaacggtaattgacgtttaattaaattttgatgttattacattgcattaatgaagagtcatgctgcaaatcatttaagtga  9216300                                                                                   --------->AHL20(2)         --------->YAB1                                                        <---------YAB1 ---------ANAC58                                                         <---------ARR11(3) ---------ANAC46             <---------------AtSPL8                      <---------AHL20(2) ---------AtLEC2             --------------->AtSPL8                      <---------AHL20(1) ---------ANAC58            <--------P              <---------ANAC55(2)  --------->ARR11(3) ------WOX13(1)           ----------->GT1          <-------TEIL          --------->AHL20(1) --------CBF       <---------At4g35610 --------->YAB1       <------------CBF   <---------TOE1(3)  --- --->ATHB12        --------->At4g35610<---------AHL20(2)   --------->ATHB12    <---------TOE2(3)  <-- >ANAC55(2)       ------->TEIL       --------->AHL20(2)   <---------YAB1 --------->AHL20(2)      <---   ttgcatgttaattagaaatgaagctgaaaggttagtacatataataatccaagtacgtagatgattgtggcataatatattaagattaaaaaatactaat  9216400            --------->ANAC58            --------->ANAC58        <---------ANAC46                      --------->YAB1        <---------ZAT6                   ------------>CBF        <---------REM1(1)          <---------ANAC55(2)      <---------ANAC46             <---------ANAC46 <------------CBF            --------->AHL20(2) ------>AHL20(2)             <---------AHL20(1)                             <---------ICU4 -------AHL20(2)             <---------AHL20(2)                           <---------GLK1(2) ------AHL20(2)              --------->AHL20(1)   ---------->DOF2       <---------TOE2(3)           <   ttatattgtggtgtaagctattagttttgaatttattatgtgaatcaattttaaaagttattagtttttagatttagattatgacccaagaattcgaagt  9216500                             <---------YAB1                             <---------ATHB51                             --------->ICU4                           --------->YAB1                         --------->AHL20(2)                         --------->AHL20(1)                        --------->YAB1                        ----------->GT1                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------HSFB2a(2)                      --------->AHL20(2)               <---------AHL20(2)                      <---------AHL20(2)               --------->AHL20(2)                       <----               <---------TOE2(3)                  <---------MYB52(1)                  ------>MYB46(1)             <---------AHL20(2)                  ----------->GT1                      ------>MYB83            --------->AHL20(2)<---------ICU4   ------>ZmHOX2a(2)                     <---------------AGL15            --------->AHL20(1)-------->HAHB4 <---------ARR14(2)                      ================            <---------AHL20(2)<--------ATHB1 --------->ARR14(2)                     --------->TOE2(3) ---------AHL20(2)   --------->YAB1        --------->ETT(2)  --------->HSFB2a(2)    <---------MYB59   atataatcgaaaaatttaatgtataaaaataataattcaacatggtcgatcgggtatttatttctagtaaaatagtatttcataaacctaattttagtta  9216600                                                                        <---------GLK1(2)                                            --------------->AGL15<---------ARR11(3)                                            <---------------AGL15<---------AHL20(1)                                            <---------DAG2       --------->ARR11(3)                                            <----------DOF2      --------->AHL20(2)                                        <---------MYB52(1)       --------->AHL20(1)                    ---------->DOF2   --------->ANAC55(2)        <---------AHL20(2)             --------->ZAT6           --------->ANAC46          --------->AHL20(2)        --------->YAB1                <---------ANAC55(2)   --------->AHL20(2)           --------->YAB1    --------->AHL20(2)               <---------TOE2(3)     --------->YAB1 <-------TEIL  <---------ATHB12   --------->AHL20(2)               <-----------GT1        --------->AHL20(2)    --------->GLK1(1)   <---------AHL20(2)            <----------DOF2        --------->YAB1  <---------ARR14(2)      ----- -------GT1<-----------GT1      <---------DAG2--------->ATHB12--------->AHL20(2) <---------GLK1(1) ===========================================================MADS_MADS   --------->ARR14(2)      -----   actatataaattataacactagtaaagtattctgccttttacgttactttattgggattaataaaaatatattggattcgttgaaatccaataacaaatt  9216700  Previous    Next  AGI:  At4g16295.1    Description:  SPH1 (S-PROTEIN HOMOLOGUE 1). similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G29035.1); similar to hypothetical protein [Brassica napus] (GB:CAC14431.1); contains InterPro domain Plant self-incompatibility S1 (InterPro:IPR010264) Range:  from: 9215696    to: 9216151    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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