Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->PCF2              --------->MYB59            <---------MYB52(1)           <-----------HVH21       --------->AtMYB61       --------->DEAR3(1)       <---------ALFIN1      --------->MYB46(3)    --------->ANAC46    --------->ANAC58                 --------->YAB1                                               <--    <---------ALFIN1       --------->ANAC58 --------->ANAC58                                      ---    --------->ANAC58       --------->ANAC58 --------->ANAC58                               ----------  <---------ALFIN1<<<<<<<<<<<<<<<<<LFY   <---------SPL7      <------NtERF2         --------->PCF2 <-- ---->ZmHOX2a(1)<------ZmHOX2a(1)   <---------YAB1          --------->RAP2.6(2)   <------ZmHOX2a(1)   cctcccacaccaccgttaggacccattggacgaaaaccatcatcgtaggcaaaccccataggccgaaaacttccaccatggtgaggacccataggcttaa  9214400                                    --------->TOE2(3)                                  --------->HSFC1(2)                                  <---------HSFC1(2)                                 <---------GLK1(1)                                 --------->GLK1(1)                               <------NtERF2                              --------->LBD16                             <---------HSFB2a(2)                             --------->HSFB2a(2)                             --------->RAP2.6(2)                             --------->ATERF1(2)                                          --------->AtMYB61                             --------->LBD16          --------->YAB1                     --------->MYB46(3)                        --------->At4g35610   --------->LBD16                         --------->WRKY38(1)           <---------LBD16  <---------LBD16   --------->HSFB2a(2)         --------->At4g35610--------          ==========================RAV<---------ALFIN1   <---------ARR11(3)          <---------ETT(2) -------ARR11(3)        ----------->RAV1(2)  --------->ANAC46             <---------At4g35610<------- ------>ARR11(3)        <---------At4g35610 <---------LBD16       <------ZmHOX2a(1)   --------->WRKY12 ->GT1    <-----------RAV1(1)<---------ATERF1(2)<---------PCF5------>ZmHOX2a(1)       --------->DEAR3(1) ---------ARR10<---------PCF5<---------ANAC46<---------LBD16 --------->TOE2(3)        --------->ETT(2)   aatctactctatctgggggaccattcatctgccggaaacctccatctccgggaccatcaaaatccttaggagtgtcatcttcccagcgtcgaccaccatt  9214500                                                                  <------NtERF2                                                                 <---------ERF1                                                                 <---------RAP2.3(1)                                                                 <---------ORA47(2)                                                                 ------>NtERF2                                                                <---------DEAR3(1)                                                                --------->ATERF1(2)                                                                <---------RRTF1(2)                                                                <---------RRTF1(3)                                                                <---------ANAC46                                                                <---------DREB2C(2)                                                                <---------RAP2.6(2)                                                                <---------RAP2.3(3)                                                                <---------ATERF1(2)              <---------ALFIN1                                  <---------RAP2.3(2)             <------NtERF2                                     --------->ATERF1(1)            --------->ANAC58                                   <------NtERF2            --------->ANAC58                                   <---------ABI4(1)            ------>NtERF2                                     <---------ERF1           --------->RAP2.3(3)                                ------>NtERF2           --------->RAP2.3(2)                                <---------MYB46(3)         --------->ABI4(1)                                    <---------ATERF1(1)         <---------ATERF1(1)                                  --------->ABI4(2)         ------>NtERF2                                     <---------DEAR3(2)                      <-        --------->DEAR3(1)                                 <---------MYB46(3)                      --        --------->ANAC46                                  <---------DEAR3(1) <---------ICU4        --      <---------ATERF1(1)                 <---------At4g35610<---------DEAR3(1)<---------YAB1      --      ------>ZmHOX2a(1)           <---------ANAC58      ------>NtERF2       <---------YAB1        <--     <---------ALFIN1             <---------ANAC58     --------->DEAR3(1) --------->YAB1      <------   ------>ZmHOX2a(1)           <---------WOX13(1)    ------>NtERF2--------->RAP2.3(1)         <------  <---------ALFIN1          <---------YAB1--------->At4g35610--------->ALFIN1--------->YAB1   <------ ->AtMYB61 --------->DEAR3(1)<---------ICU4         --------->DEAR3(1)    <---------ICU4      ------- --ICU4 <---------ALFIN1    <---------ATHB51     --------->ANAC46<---------ATERF1(1) ------>ZmHOX2a(1)   acctcctcctccgcccccaattccaattcgataattgctagggctgcttccacgacgacgacggtggcggcgaaaatcatcatcatcctcttcgaagcgt  9214600                                                                <---------ALFIN1                                                               <------NtERF2                                                              ------>NtERF2                                                             <---------ATERF1(2)                                                             --------->RAP2.6(2)                                                             --------->ATERF1(2)                                                             --------->DEAR3(1)                                                             --------->RAP2.3(2)                                                             --------->RAP2.3(3)                                                             >>>>>>>>>AtERF-5                                                             >>>>>>>>>AtERF-4                                                             >>>>>>>>>AtERF-3                                                             --------->ANAC46                                                             >>>>>>>>>AtERF-1                                                             >>>>>>>>>AtERF-2                                                            --------->ERF1                                                            --------->ATERF1(1)                                                            --------->RAP2.3(1)                                                            --------->MYB46(3)                                                      ------>ZmHOX2a(1)                                                  <---------ARR14(2)                                                  --------->ARR14(2)                                                <------ZmHOX2a(1)                                                =====================================HOX2a_HOX2a                                               <------MYB83--------->At4g35610 --------ARR14(2)                              <------MYB46(1)<---------RAP2.6(3)    <---------ANAC58 ------->ARR14(2)                            <--------P   --------->ARR14(2)         <---------ANAC58 ----->TEIL                               <---------TOE1(3)<---------ATERF1(1)    <---------MYB52(1) ------->GLK1(2)                          <---------YAB1  <---------ARR14(2) --------->ARR14(2) -------CCA1(2)                           <---------TOE2(3)<---------At4g35610<------ZmHOX2a(2) ---ANAC58                            <-------GAMYB   ===============================HOX2a_HOX2a ---ANAC58                           --------->MYB55(2)--------->TOE2(1)     <---------ARR14(2)     - ---ANAC46           <---------LBD16 <---------MYB46(3)--------->TOE1(1)   <---------ANAC58      ---- ---->GT1        ------->TEIL    <---------DEAR3(1)<---------HSFB2a(1)     <---------ANAC58      <---   gaatctgagggacgagatggacctctgggatgggctcggtggttatggtaggaatcctcgtagccgccactctcatggcgatcccttcggtgtctgtcca  9214700                                                                    ------>ZmHOX2a(2)                                                                   <------ZmHOX2a(2)                                                                   --------->At4g35610                                                                  --------->ARR11(3)                                                                  <---------ARR11(3)                                                                  --------->ARR14(2)                     <---------ARR14(2)         ==========================HOX2a_HOX2a                  <---------ANAC58              ===========================HOX2a_HOX2a        --------->ALFIN1                        <------ZmHOX2a(1) <---------ARR14(2)        <---------ANAC46   <---------------------WRI1       >>>>>>>>>SARD1   <---------ANAC46  --------->GLK1(2)    =================================HOX2a_HOX2a ---------->HVH21 <---------ANAC58        ================================HOX2a_HOX2a ----->ZAT2   --------->GLK1(1)           <------ZmHOX2a(1) >>>>>>>>>CBP60g                 --------- ------ZAT2   <---------GLK1(1)       ---------->DOF2 <---------HSFB2a(2)       ---------->DOF2   gcttgacgtagtggggaattgcgattccagtcgaagaaatcaaaggactaggagccctagaaatttgggatctgtatgaaaccaaagagagaagaaacga  9214800                                             --------->ANAC58                   <---------WOX13(1)      <---------ANAC58                 --------->ATHB12          <---------ANAC46                        --------->DAG2  --                <---------YAB1             <---------ANAC58                       ---------->DOF2<---                <---------AHL20(2)       *TSS--------->ANAC58                 <----------ID1     <---             ------->TEIL      <------ZmHOX2a(2)          <---------AHL20(2)---------->DOF2     <---- >CCA1(2) <---------YAB1      --------->ARR11(3)     <---------YAB1   ----------->GT1     <----------   gtatcgaagatgatgaatttgattgaagatgagatcaatttagttgctcgaaattttgatttttttgtccgaatgtaaaaaagaaaaagcggtctagtta  9214900           <------MYB83           <------MYB46(1)           ----------->HVH21         <--------P       --------->ATHB12                                                                           <--       <---------MYB46(3)       >>>>>>>>>SARD1                                                    <--       --------->MYB55(2)<-------GAMYB                                                            --- ------->At5g28300       --------->At4g35610                                                      --- ------TOE1(3)           <---------At4g35610                                    <---------At4g35610<- ------TOE2(3)     <---------MYB46(3)     <--------P                 <----------ID1               <-- -----At5g28300  <---------MYB52(1)      <---------MYB52(1)          ----------->GT1              --- -------AGL1    ----------->GT1 >>>>>>>>>CBP60g<----------DOF2     --------->MYB52(1)        <-------   cggtaatagtggttggaccggtgattcagttgaaatttggaccggtagactttattgagtcttggctgataacgaaaaatacagctacttgggccatcaa  9215000               ---------->DOF2             <---------------AGL15                                           --------->ANAC46             --------------->AGL15                                           --------->ANAC55(2)            ----------------->AGL1                                           <---------At4g35610            ----------------->AG                               <---------AHL20(2)   --------->AHL20(2)                                          --------->AHL20(2)   <---------AHL20(2)                                          --------->AHL20(1) -------AHL20(2)                                              --------->AHL20(2) -------AHL20(1)        --------->CCA1(2)                ----------->GT1    <---------TOE2(3) ------>ARR11(3)       --------->ARR14(2)                <----------ID1     <---------TOE1(3) ------>AHL20(1)       <---------ARR14(2)       --------->DOF5.7(2)        <-----------RAV1(2) --------AHL20(2)    ----------->GT1           --------->TOE2(3)      <---------------AGL15 -------ARR11(3) --------->DAG2                --------->TOE1(3)    <-----------GT1 ------>AHL20(2)--------->DAG2        <---------ATHB12---------->DOF2----------------->AGL1 --ATHB12   ==========================================================================MADS_MADS   tatatttatatactgccaaaagggggatacaattgttccaatgagttttcgttaacaaaaggaaaaaaattgacatttcaggtaactctcacattcttaa  9215100                                                                                        <------MYB83                                                                                        <---------ANAC58                                                                                        <------MYB46(1)                                                                                        <---------ANAC58                                                                                        <---------ANAC46                                                                                       --------->MYB55(2)                                                                   <---------ANAC58    <---------MYB46(3)                                                                   <---------ANAC46   <---------ANAC46                                                                   <---------ANAC58--------->ALFIN1                                                        <-------TEIL               <-----------RAV1(1)                                                       --------->AtLEC2       <---------ATHB12    ---                 <-----------HVH21              <---------------AtSPL8     <---------AHL20(2)     ---         <---------GLK1(2)                 <---------YAB1 ------->TEIL    --------->AHL20(2)     <---   gtccaatccaaaattctcatgtcaactatatgcttcagaaacattttgatatagtacatgcatttcatggcgtttattaaatcatgtgttgggtgatcaa  9215200                                                     --------->CCA1(2)            <---------MYB59    --------->DAG2                                  <---------ARR11(3)            --------->TOE1(3)   ---------->DOF2                                  <---------ARR14(2)      <----------DOF2     <---- ------>AHL20(2)                                    --------->ARR14(2)     <---------DAG2--------->YAB1 ------>YAB1                                       <------ZmHOX2a(1)<---------ZAT14   --------->YAB1 ------ATHB12    --------->AtLEC2          ------->TEIL         <---------AGP1    --------->TOE2(3)--   taatataaagttctaagtaatgcaaaatacttgcatcactatatgaatttagaggatatatgactaggtctgaactaccttttacctaaaataatcaaat  9215300  Previous    Next  AGI:  At4g16280.1    Description:  FCA; RNA binding. Identical to Flowering time control protein FCA (FCA) [Arabidopsis Thaliana] (GB:O04425;GB:O04424;GB:O04727); similar to flowering time control protein-related / FCA gamma-related [Arabidopsis thaliana] (TAIR:AT2G47310.1); similar to FCA gamma [Brassica napus] (GB:AAL61622.1); contains InterPro domain Ribonucleoprotein, BRUNO-like (InterPro:IPR015903); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202) Range:  from: 9207180    to: 9214841    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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