Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  --------->TOE1(3)                --------->TOE2(3)               --------->YAB1             ------>MYB83             ------>MYB46(1)         --------->SPL7       <---------SPL7      --------->ANAC55(2)      <---------ANAC55(2)                                                                <-----------GT1      <---------ANAC58                                                           --------->ANAC58      <---------ANAC58                                                           --------->ANAC58     --------------->AtSPL3                   <------MYB46(1)                   <---------LBD16   <---------ARR14(2)                         <------MYB83                      --------->LBD16   --------->GLK1(2)                       <---------ANAC58                    --------->LBD16   --------->ARR14(2)                      XXXXXXXXXXXXXXXXXXXX>MIR168A/B     <---------LBD16  <---------GLK1(1)                        <---------ANAC58                  <---------At5g28300  --------->GLK1(1)                       --------->ATHB12                 <---------ARR14(2) --->ZmHOX2a(2)----------->GT1       ------>ZmHOX2a(1)                    --------->GLK1(1) ---ZmHOX2a(2)<---------ATHB12       <---------HSFB2a(2)                  <---------GLK1(1)      ----   tcgcaaatccgtaccaatcgttaaaacctctgatttgtcctcgatgcttggtacagattgagacatgagccctagcatttcccgcgcattttcactgtaa  9199100                                                                        <---------HSFB2a(2)                                                                       <---------LBD16                                                                       ------>ZmHOX2a(2)         <---                                  --------->ANAC58                    <------ZmHOX2a(2)       <------                                ---------->DOF2                      --------->ARR14(2)       -------                               <------ZmHOX2a(2)                     <---------ARR14(2)      <-------                           <------NtERF2                       -------------->OsCBT         ------>ZmHOX2a(2)                          ------>NtERF2                      --------->DEAR3(1)             =========                <---------GLK1(2)--------->WOX13(1)         <------NtERF2--------->LBD16   --------->At4g35610         ---------->DOF2 <---------DEAR3(1) --------->DAG2 ------>NtERF2<---------LBD16    <---------At4g35610       <---------YAB1 ----------->HVH21    ---------->DOF2 <---------At5g28300            --------->ARR11(3)  --------->ATHB12<---------HSFB2a(1)     ---------->DOF2 --------->DEAR3(1)        --------->At4g35610 <---------ATHB12 <---------HSFC1(2)  --------->At4g35610 <---------ALFIN1       --------->CCA1(2) <---------YAB1 --------->ARR14(2)--------->ANAC46       --------->MYB46(3)    --------->CCA1(2) <--- ----->MYB46(3) <---------ARR14(2)--------->ANAC58<---------ANAC46 <---------MYB46(3)   ----------->ARR10   ccgatgattgtgaaagtggattcttcgacggcgatcaagcagccaaaaggctgggtatagccaccgcgttggatccgggagagataagctgtgatctgct  9199200                         <---------ANAC46                        --------->ATERF1(1)                        <------NtERF2                        --------->DEAR4(2)                        --------->RAP2.3(1)                       --------->ABI4(2)                       <---------ATERF1(1)                       ------>NtERF2                       <---------RAP2.3(1)                      <---------DEAR3(1)                      --------->DEAR3(1)                     --------->ATERF1(1)                     --------->RAP2.3(1)                    <---------ATERF1(1)                   --------->ANAC46                  --------->SPL7                                          <---------MYB46(3)           <------ZmHOX2a(1)                                              <---------HSFB2a(1)     <---------LBD16<---------RAP2.3(1)                                   --------->KAN4(1)     --------->SPL7<---------DEAR3(1)                                   --------->ARR14(2)   <---------SPL7<---------SPL1(1)                                      <---------GLK1(2)<------NtERF2 ------ZAT14     --------->SPL1(1)                                    --------->LBD16    --------->ALFIN1 ---At4g35610 --------------->AtSPL3                         ----------->HVH21         <---------ANAC58 -->At4g35610 <---------------AtSPL3                        <---------MYB59            <---------ANAC58 ----RAV1(1)<---------ARR14(2)                             --------->ANAC55(2)         <---------ANAC46 =================HOX2a_HOX2a                              ----------->RAV1(2)        <------NtERF2<- ------At4g35610<---------SPL7                            -------->P<---------LBD16 <---------DEAR3(1)   gctctggtacggaggaatcgtacggcgccgttttaagagactgtgagtaatcaaacgacttacctgactctccggattgttcgaagacggcgtggagtct  9199300                                               <---------ALFIN1                                               --------->DEAR3(1)             <---------ZAT6                   --------->MYB46(3)         <---------ZAT14                     ------>NtERF2         --------->ZAT18                     --------->LBD16               ----------->HVH21         <---------ZAT18                    --------->ANAC58     <---------ZAT2         --------->ZAT14                    --------->ANAC58     --------->At4g35610             <---  --------->ETT(2)                          --------->ANAC46<---------RAP2.6(2)                 -----  ----------->HVH21              --------->ZAT14  --------->DEAR3(1) <---------GLK1(2)          -----  <---------ETT(2)               <---------ZAT18 <------NtERF2   <---------At4g35610          ------- <------NtERF2                   --------->ZAT18------>NtERF2  <---------RAP2.6(2)            <------ --------ANAC46         <----------DOF2    <---------LBD16<-----------RAV1(1)          <----------DOF2   cgcgtcgacagtgtactgttgaatagctttgtttgtggactctgttccgccaccgtggttttgtggctgctgattctgtgaccttagggctttgtttgct  9199400                                                      <---------HSFC1(2)                                                      <---------HSFB2a(1)                                                      --------->At4g35610                                                      --------->HSFB2a(1)                                                      <---------At4g35610                                                      --------->ZAT2                 <---------ALFIN1                           ----------->HVH21          <---------ZAT2                 --------->DEAR3(1)                         <---------ANAC58          <------ZmHOX2a(1) <---------MYB52(1)  --------->LBD16      <---------ZAT2     <---------ANAC58    <---------ANAC58       <---------At4g35610<---------LBD16 ------TGA2(2)    <---------At4g35610        <---------ANAC46      --------->DEAR3(1)--------->AtMYB61 ------>TGA1   <---------At4g35610           <---------ANAC58     --------->MYB46(3)--------->ZAT2 ------>HVH21  --------->At4g35610       --------->ATERF1(1)    <---------ALFIN1  --------->AtMYB61 -->At4g35610  --------->ZAT14         <---------DEAR3(1)------>NtERF2            <---------ALFIN1 ---At4g35610  <---------ZAT14      <---------DEAR3(1)--------->HSFC1(2)         --------->MYB46(3)   gacgactgagcttgttctgcagcgctggtgtgacgacttcggcgatggcctgaggaagctgcctctccaccgctggttttgctaccacctccggagacca  9199500                                                                  <------------CBF                                                                 <--------ATHB1                                                                 --------->ATHB51                                                                 -------->ATHB1                                                                 --------->ATHB12                                                                 --------->YAB1                                                                 <---------ICU4                                                                --------->ICU4                                                                <---------ATHB12                                                     <-----------ARR10                                                     --------->ARR14(3)                                                     <---------ARR11(3)                      <-------                                                     <---------ARR14(2)                      <-------                                                     <---------ARR14(3)                      --------                                                     --------->ARR14(2)                      --------                                                     --------->GLK1(2) --------->ARR14(2)    <-------                                                     --------->ARR11(3)<---------ARR14(2)   <--------                                           --------->CCA1(2)  --------->WOX13(1)     <----------DOF2                                      <---------ANAC58       ------------>ATHB5   <---------ALFIN1                                      <---------ANAC58      ------------>CBF    --------->AtMYB61   tttttctcagttaatggttttggaatttcaaagaattagtgcgagagacgaagaaaatcttcttcaatcattggattcgaaaccacactttcacaaatct  9199600        --------->At4g35610                              <-----------HVH21 --ARR14(2)                                             --------->DEAR3(1) --ARR11(3)                    --------->ARR11(3)     <---------At5g28300               ----------->GT1 ->ARR11(3)                    <---------ARR11(3)    <-----------GT1            ----------->GT1 ->ARR14(2)             --------->YAB1              <---------YAB1     ------->GAMYB    --------->YAB1 ----ARR10        --------->YAB1                  --------->YAB1    --------->MYB52(1) <---------YAB1 -CCA1(2)      --------->YAB1 <------ZmHOX2a(1)   <---------ICU4  <----------DOF2      ----------->GT1   tcactgtaagagctcaaaaatgatactcataaggatttttgggaagcttgaattatcaccgtcgctagcttaacggcgaagtttgtaaaatgataaaaca  9199700                                                             <---------ZAT18                                               <---------At4g35610                                               --------->At4g35610                                            ---------->DOF2  --------->ZAT14                                       <---------AHL20(2) ----------->GT1                                       --------->AHL20(2) <---------MYB46(3)                                      --------->AHL20(2) <---------AtMYB61                                      --------->YAB1     <---------DEAR3(1)            --------->ARR11(3)                                     <---------ATHB12    --------->ALFIN1            --------->WRKY12                                   --------->WOX13(1) --------->ALFIN1     <---------TOE2(3)      <-- ------------>CBF                ------------>CBF --------->At4g35610     ---------->DOF2    --------   gaaaccaatttgaatttttcttaaggctctcaaaaaccaattaaaatgaagcagaagaggtggtgaactcaaggattaaagaagacgatgaccttgttct  9199800                                                                                              <------                                                                                              <------                                                                                          <---------MYB52(1)                                    ---------->DOF2                                      <-------GAMYB                                --------->TOE2(3)        <------MYB83                    ============                                --------->TOE1(3)        <------MYB46(1)         <-----------GT1   --------->ATHB12            ----------->GT1          --------->MYB59 ----------->RAV1(1)   <------  <---------YAB1        <---------AHL20(2)           <---------ANAC46  ------->GAMYB    <---------ANAC58 --------DOF2           --------->AHL20(2) <---------HSFB2a(2)      <-----------GT1     --------->MYB52(2) -->ID1 <-----------GT1--------->YAB1      --------->HSFB2a(2)     <-----------GT1      <---------ANAC58   ctttatgatttgactccctcgtctattaaaatttcgttaaaagttccaaaaacttgtgtaggtatcaatttaacccacatttttaaactttcgttgcctt  9199900                                <---------ANAC46                              <---------MYB46(3)                            <---------ANAC58                            <---------ANAC58                            <-------GAMYB                            <---------ANAC46                         --------->ALFIN1                        ------->MYC3                        <-------MYC3                        <-------MYC2                        ------->PIF5                        ------->MYC2                        <-------PIF5                       --------->ANAC55(2)                       <---------ANAC55(2)                       <---------bZIP60(2)                       --------->TGA1a                       <---------TGA1a                       <---------O2                       --------->O2                       =============MYC_MYB                                            <------NtERF2                       <---------ANAC46                                              <---------ANAC58                       <---------ANAC58                                              <---------ANAC58                       <---------ANAC58                                           <---------RAP2.3(3)                    <------ZmHOX2a(2)                                            --------->ALFIN1                   <---------ARR11(3)--------->KAN4(1)                          <-------MYC2       <---------YAB1 ------------>OsbHLH66                                     <-------MYC3 ---ANAC46         --------->ARR11(3)<---------KAN4(1)                          ------->MYC2 ---ANAC58  ===============HOX2a_HOX2a--------->KAN4(2)                         ------->MYC3      --- ================================MYC_MYB              <---------SPL7           --------->ALFIN1 ----- ---ANAC58  <------ZmHOX2a(1) --------->ALFIN1    <---------ZAT18      <-----------RAV1(1)  <--------   gtatgttttatgaaggaccgagatcacgtgggttgtggattattccgactagtgggcatacgagggacgatatatgtgggcatgtgggcgtctgtgtcct  9200000  Previous    Next  AGI:  At4g16250.1    Description:  PHYD (PHYTOCHROME DEFECTIVE D); G-protein coupled photoreceptor/ signal transducer. Identical to Phytochrome D (PHYD) [Arabidopsis Thaliana] (GB:P42497;GB:O23472); similar to PHYA (PHYTOCHROME A), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT1G09570.1); similar to PHYE (PHYTOCHROME DEFECTIVE E), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT4G18130.1); similar to PHYB (PHYTOCHROME B), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT2G18790.1); similar to phytochrome B [Arabidopsis lyrata] (GB:AAW56591.1); similar to phytochrome B [Cleome Range:  from: 9195617    to: 9199501    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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