Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            --------->ZAT18                                       <---------ANAC58                                       <---------ANAC46                                       <---------ANAC58                                      <------NtERF2                     --------->ARR14(2)                                     ------>NtERF2                     --------->At4g35610                                    <---------DEAR3(1)                 --------->ZAT2                                 --------->ETT(2)                -------->P                                --------->HSFB2a(2)            <---------ALFIN1                           --------->HSFB2a(1)                 <---------MYB111(1)                           <---------HSFB2a(1)                 <---------MYB111(2)                           <---------HSFC1(2)                  --------->AtMYB61                           --------->HSFC1(2)                  <---------MYB55(2)           <--------                          <---------ARR11(3)      <---------At4g35610  <---------ZAT2    <---------ATHB12                          --------->ARR14(2)      <---------ZAT2 ------>MYB46(1)  -------->HAHB4               <------ZmHOX2a(1)<---------HSFB2a(2)            --------->MYB46(3) --------->YAB1      <---------AHL20(2)  <---------ARR14(2)      --------->ZAT2 ------>MYB83    <---------YAB1      --------->AHL20(2)  <-----------ARR10       --------->At4g35610  <---------At4g35610--------->YAB1     --------->AHL20(2)   --------->ARR11(3)     ------->TEIL --------->MYB46(3) --------->ICU4  ------>ZmHOX2a(1)      <------ZmHOX2a(1)<---------ZAT14    ------>NtERF2     --------->YAB1 <---------MYB59   ---------->DOF2  --------->ANAC46        --------->RAP2.6(2)<---------ICU4       <   cttcctaattaataagaggaagaaagaggaccttctcgacggcgtgcaatgcagctccatggccaccaactccagctccgataatgatcaaatcataatc  9156900                                                       <---------GLK1(2)                                              --------->ATERF1(1)                                              <------NtERF2                                             <---------ATERF1(1)                                           --------->ATERF1(1)                                           <---------LBD16                                           <------NtERF2                                          <---------RAP2.3(1)                                         <---------DEAR3(1)                          <-------PIF5                                         --------->DEAR3(1)                          ------->PIF5             <---------At4g35610         <---------RAP2.3(2)                   --------->ANAC46             --------->At4g35610        <---------At4g35610                    --------->ANAC58    --             <---------GLK1(1)       --------->At4g35610                     --------->MYB52(1) <---- --------->ATHB12        --------->At4g35610<---------DEAR3(1)     <---------------AGL15        <---- <---------ICU4          <---------At4g35610<---------ANAC46       --------------->AGL15  <---------WRKY12 -YAB1       --------->GLK1(1)  >>>>>>>>>TBF1--------->LBD16      <-----------------AGL3<-----------HVH21 ---------ATHB12         <---------LBD16--------->At4g35610   ------>ZmHOX2a(1)--------->ANAC58 <----   gaatgatttcgatggagctccatttccagcggaagaagaagcagcggcggagacttcgattctcctactctgaatatggaaacggcacgaggtcaattgc  9157000                                                                                            <--------                                                                      <---------ANAC46      <--------                                                                      <---------ANAC58   --------->SPL7                                       --------->ARR14(2)         --------->At4g35610    <---------TOE1(2)                                       <---------ARR14(2)         <---------At4g35610    <-----------                                    --------->ANAC46            <------ZmHOX2a(1)      <---------SPL7          --------->ANAC58       <---------ZAT14       <------NtERF2  <---------ANAC58 --------->ZAT18          --------->ANAC58       --------->ZAT14     <---------DEAR3(1)                --------->TOE1(2) <---------LBD16                 --------->ZAT18    <---------LBD16  <-------TEIL     <---------ANAC58 --------->HVH21             <------NtERF2      --------->GLK1(1) <---------ZAT2      <---------ANAC58 -----ANAC58                --------->LBD16--------->LBD16<------NtERF2<-------GAMYB <---------------AtSPL3 -----ANAC46               --------->DEAR3(1)   <---------GLK1(1) --------->ZAT2  ---------->DOF2  -- -----ANAC58              <---------LBD16<---------LBD16<---------ANAC46  <---------MYB46(3)---------   ttcgacggagagaagcaaaacgcttctcgccggagtccacagaaccggagatttctcggcgtagaaggagctgcgttggatgaacaaagcgtacgattcg  9157100                                                                                     --------->DAG2                                                                              ----------->GT1                                                                            <---------ZAT14                                                                            --------->ZAT14                                                                            --------->REM1(2)                                                                        ------>ZmHOX2a(2)                                                                       --------->CCA1(2)                                                                       <------ZmHOX2a(2)                                                                      <---------ARR11(3)           --                                                                      --------->AGP1---------->DOF2<- -ARR14(2)  <---------ANAC58                                          --------->ARR11(3)       <----- -GLK1(2)   <---------ANAC46                                          --------->ARR14(2)     -------- ----------WRI1                                                       <---------ARR14(2)    --------- -------->DOF2          ---------->DOF2         <---------ANAC58     --------->GLK1(1)      --------- >ARR14(2)  <---------ANAC58  ---------->DOF2   <---------ANAC58     <---------GLK1(1)      ---------   ctaaaggaagcgatgcttgtgagaaggaaagagaaagaaccgattgcattgtgtacgagagagtgaatgagagatctgtgtagagaaaaagggagtgacg  9157200                                                                      ======================bZIP_DOF                                                                      --------->ANAC55(2)                                                                      <---------ANAC55(2)                                                                      --------->TGA1a                                                                      <---------O2                                                                      --------->O2                                                                      <---------TGA1a                                                                   ----------->HVH21                                                                  <-----------HVH21                                                                 ----------->HVH21                                                                <-------MYC3                                                                ------->MYC3                                                                <-------MYC2                                                                ------->MYC4                                                                ----------------------->TaNAC69(2)                                                =========================bZIP_DOF                                                =========================bZIP_DOF                                                ---------->DOF2 <-------MYC4                                            --------->GLK1(1)   ------->MYC2                                           --------->ARR11(3)  --------->O2                                           <---------ARR11(3)  <---------O2                                        <------NtERF2          --------->ANAC55(2)                                       --------->LBD16         =============================bZIP_DOF                                      <---------DEAR3(1)       <---------TGA1a ----------->HVH21                    <---------ANAC46         <---------ANAC55(2) ------->At4g35610                   <---------------------WRI1--------->TGA1a --------At4g35610                   --------->ATERF1(1)       <--------ABF1 ----ANAC46                          <------NtERF2        ----------->HVH21 ->MYB52(1)                         <---------ATERF1(1)  ----------------------->TaNAC69(2)   ------- -->TGA1   --------->ZAT14          xxxxxxxxxxxxxxxx>smallRNA(i)-------->ABF1            --------->LBD16 -->HVH21  <---------ZAT14         --------->ALFIN1     --------->At4g35610      <----------DOF2 >ALFIN1 --------------->AtSPL8    <---------DEAR3(1)   <---------At4g35610   *TSS     <---------LBD16   gagatgacaagtctgtactagtctcactcgacgagcggaggcggagatatcaaagcggagatgacacgtgtcacgtttctcgtctttaaaccggagattt  9157300                                                                                  ------->MYC2                                                                                  ------->MYC4                                                                                  <-------MYC4                                                                                  ------->PIF5                                                                                  <-------PIF5                                                                                  <-------MYC3                                                                                  <-------MYC2                                                                                 --------->PIF3(3)                                                                                 --------->TGA1a                                                                                 <---------O2                                                                  <---------ARR11(3)                                                                  --------->ARR11(3)       <------ZmHOX2a(1)                                                                --------->DOF5.7(2)--------->ALFIN1                                                                <---------MYB52(1)------->MYC3                                                              --------->bZIP60(1)--------->O2 -------       --------->LBD16                                        <---------bZIP60(1)<---------TGA1a       ------>NtERF2                                       ----------->TGA1      <---------ANAC46      --------->LBD16                   <----------DOF2    ----------->HVH21     <---------PIF3(3)     <---------LBD16            <------------CBF         ----------->RAV1(2)   <---------ALFIN1   <-- -->GLK1(1)  --------->YAB1  >>>>>>>>>>>>>>>>>LFY        <---------AtLEC2    ----------------->PIF3(1)   caaaattcccggctataatatccaactctgagcccattgggccttttatttctcggtctgcctgacgttatcttgtgagagccacgtggggaaggagaac  9157400                                   =====================bZIP_DOF                                   ---------->DOF2                                  XXXXXXXXXXXXXXXXXXXX>MIR164A/B                                  XXXXXXXXXXXXXXXXXXXX>MIR164C                             --------->ALFIN1                            ------->MYC3                            <-------MYC2                           <---------ANAC46                           ===================bZIP_DOF                           <---------ANAC55(2)                           --------->O2                           <---------O2                           --------->TGA1a                           ===================bZIP_DOF                           <---------TGA1a       <-----------HVH21                           <--------ABF1       -------->ABF1                           --------->ANAC55(2) <-------MYC4                          ------------>OsbHLH66------->MYC3                         <------------OsbHLH66 <-------MYC3                       ------>NtERF2           ------->MYC2                       <-----------HVH21       <-------MYC2                      ----------->HVH21        ------->MYC4                      <---------ETT(1)        <---------O2                 <---------ATERF1(1)--------->DAG2   ---------->DOF2            --------->ANAC58------->MYC4      <---------ANAC55(2)            --------->ANAC58<-------MYC3      --------->O2          --------->MYB52(1)------->MYC2      ==================bZIP_DOF                <---------ANAC58    ----------->GT1   --------->ANAC46        <---------TGA1a                        ------>ZmHOX2a(1) -->MYB52(1)--------->ANAC46<-------MYC4      --------->ANAC55(2)        ------------>CBF    <------- -------------------WRI1 <---------ALFIN1     --------->TGA1a           <-----------GT1 <---------ANAC58   ggcgaacagttcaaacggcagactccgacacgtgtggaaaagcagaacacgtgtcaaaagaacgctgttctgtttcacaatcttctccttacttgttgtt  9157500                                          ---------->DOF2                               ----------->RAV1(1)                            ------------------------>ANAC81                            --------->ANAC58         --------->AHL20(2)        --------->YAB1      <-      ----------->GT1       --------->ANAC58    ----------->GT1         <------ZmHOX2a(1)          -- --MYB46(3)        ---------->DOF2        *TSS---------->DOF2      --------->ALFIN1          --------   gaagagagaagtattaacagagaaagagagaagcaacaagtgaagaaagaaagaaaaaaatggagaagagtggaggaagaattgtaatggatgagataag  9157600                                                                             <------NtERF2                                                                            --------->LBD16                                                                           --------->DEAR3(1)                                                                         ------>NtERF2                                                         --------->GLK1(2)<---------LBD16                                                        <---------GLK1(2)<---------ATERF1(1)                                                        <---------ARR14(2)<------NtERF2                                                        --------->ARR14(2)--------->RAP2.3(1)                                                       --------->HSFB2a(1)--------->ATERF1(1)                                                 --------->ARR14(2)     --------->DEAR3(1)     <-----    <---------HSFB2a(2)                         <---------CCA1(2)  <---------DOF5.7(2)         ------    --------->HSFB2a(2)             ------>ZmHOX2a(1) <---------TOE1(2) --------->RAP2.3(2)    <----- <----------DOF2         ------>ZmHOX2a(2)    ------->GAMYB        ---------->DOF2             <----- --------HSFC1(2)        ==================HOX2a_HOX2a<---------TOE2(2)--------->RAP2.3(1)     <----- ------->HSFC1(2)      --------->ARR11(3)  <-----------GT1       --------->DOF5.7(2)           ------ ->CCA1(2)   <---------ALFIN1 --------->WRKY18(1)--------->SPL7 --------->TOE2(3)             <------   aagctttgagaaggcacacttgttcgatcttggtcatcctcttcttaaccgtatcgcagattccttcgttaaagccgccggagtaagttttcatccatat  9157700                                                                                                    <                                                                                          <----------                      ------->TEIL                                                     <---------ANAC58 ----ARR11(1)        <---------AtLEC2                                               --------->ANAC58- --->ARR11(3)   <---------ARR14(2)              <---------------AGL15               --------->ANAC46< ------ARR10    --------->ARR14(2)              --------------->AGL15         <----------DOF2       - ----ARR11(3)<---------ANAC58                  <-----------------AGL3       --------->At4g35610     < ----ARR14(2)<---------ANAC46                  <-----------------AGL2     <---------PCF2  --------->REM1(2) --->ARR14(2)<---------ANAC58            >>>>>>>>>MYB98                --------->ALFIN1<---------ANAC58 ---CCA1(2)<-----------HVH21         ----------->GT1             <---------YAB1     --------->ANAC58-   ctcttcgtttccctgtcgtatatgcatgtaacatatatgtagtaacatagcttaatatggattaactatgaaggtgggagctttacaagccgtgtcaagg  9157800  Previous    Next  AGI:  At4g16155.1    Description:  dihydrolipoamide dehydrogenase 2, plastidic / lipoamide dehydrogenase 2 (PTLPD2). similar to LPD1 (LIPOAMIDE DEHYDROGENASE 1) [Arabidopsis thaliana] (TAIR:AT3G16950.1); similar to LPD1 (LIPOAMIDE DEHYDROGENASE 1) [Arabidopsis thaliana] (TAIR:AT3G16950.2); similar to Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABD32316.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44892.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17448.1); contains InterPro domain FAD/NAD-linked reductase, dimerisation; (InterPro:IPR016156); contains InterPro domain Pyridine nucleotide-disulphide oxidored Range:  from: 9153379    to: 9157278    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g16160.1    Description:  ATOEP16-2/ATOEP16-S; P-P-bond-hydrolysis-driven protein transmembrane transporter. similar to OEP16 (OUTER ENVELOPE PROTEIN 16), P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] (TAIR:AT2G28900.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44894.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397) Range:  from: 9157542    to: 9158948    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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