Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                   --                                                                                                   <-                                                                     <---------ANAC46              --                        --------->ANAC58                             <---------ANAC58           <----                        --------->ANAC58                             <---------bZIP60(2)       <-----               <----------DOF2                                       <---------ANAC58         -------           <-----------------AGL1              --------->YAB1       <-----------------------TaNAC69(2)           <---------ZAT18                   <-----------HVH21    ----------->HVH21         <------NtERF2 ---DEAR3(1)<---------ALFIN1   ------>ZmHOX2a(1)                  ----------->TGA1          ---------   cgaagttccattgcccactttcggtctcgcatcctacaagtttaaactgtcagaatggagcccagagagtgacgtagacgagaaccagagagtcgggacg  9107900                                                                                          --------->ICU4                                                                                        <---------At4g35610         <---------At4g35610                                                        --------->ALFIN1       --------->MYB46(3)                                                           <------NtERF2 --------ZAT2                                                                     <---------ANAC46 ------->ZAT2                <-------GAMYB                                        <---------ANAC58 --------At4g35610          <---------MYB46(3)                                 <---------DEAR3(1) ------->At4g35610         <---------DEAR3(1)      <----------DOF2            --------->SPL7  ------- -----At4g35610   --------->ALFIN1           <---------LBD16                 --------->ARR14(2)------ ----DEAR3(1)   --------->ALFIN1            --------->MYB52(1)               <---------ARR14(2)<----- -->SPL7 --------->ZAT2<-----------RAV1(2) <-----------GT1                 <---------MYB46(3)<------- -->HVH21--------->At4g35610<---------DEAR3(2) --------->LBD16  <---------CCA1(2) <---------ANAC58   ctgctacgaacagctgaagagtggctcaggcggttgaaggtgattctaccggactttagacacttcatatcgcatagtggttcggcgtggagatgatgat  9108000                                                          <----------DOF2                                                       <---------AHL20(1)                                                       --------->AHL20(1)                                                       <---------ARR11(3)                                                       --------->ARR11(3)                                                      --------->CCA1(1)                           --- -->YAB1                                              --------->RVE1(1)                           <-- --->ARR11(3)                                  ----------->GT1      <----------DOF2               --- ----ARR11(3)                  ----------->GT1--------->DAG2   <---------At4g35610               <--- --YAB1                     <------ZmHOX2a(1)---------->DOF2   --------->At4g35610            -------   atttagagtcattttctaaactctaaataaggagagtgatatatagcaaaagtgaaatatctttcagctacttttgtttgttttgttgaaggaaaatgag  9108100    --------->ZAT14 ------>GLK1(2)                                                                  --------->DAG2 -------ARR14(2)            --------->AHL20(2)                  ----------->GT1 ---------->DOF2 ------>ARR14(2)            <---------AHL20(2)   <---------AHL20(2)     <----------ID1<------MYB46(1) ------GLK1(2)     <---------TOE1(2)           <---------ANAC55(2)      ----------->GT1 -->YAB1        ------>ZmHOX2a(2)              --------->ANAC55(2)    ---------->DOF2 <------MYB83   aatctgtatagacactgatcgtacatttgtttaattactgggaaaacttatgtaattgaaacagtttggaaaaaaagaaaaaaaaagttggtcgaagaga  9108200                                                       <---------ZAT14                  <---------YAB1              <---------YAB1                               <---------ICU4                 <-------GAMYB              --------->CCA1(2)                              --------->ATHB12                ------>ZmHOX2a(2)          <---------AHL20(2)                              -------->HAHB4             --------->YAB1                <---------AHL20(1)                             --------->ICU4            <---------YAB1                 --------->AHL20(1)                             <---------ATHB12        <----------DOF2            <---------ANAC46  --------->REM1(2)                --------->AHL20(2)        <---------DAG2         <------------CBF     --------->ALFIN1            --------->YAB1   <---------At4g35610       <---------MYB52(1)  ------->TEIL               <---------AHL20(2)      <   gtttcttctgctttatgatcgttatagtttcgttattgtgtataatatatgaatgtgtagactgtgagcgatttgtatttaagtataagtaaatgattag  9108300                                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                      --------->ZAT18                                  xxxxxxxxxxxxxxxx>smallRNA(i)                                  xxxxxxxxxxxxxxxx>smallRNA(se3)                                <-------GAMYB                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               <------MYB83                               <------MYB46(1)                          <-----------RAV1(2)                       <---------ZAT2 --------->ZAT14                                              <-                       --------->ZAT2xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                            <-                       <---------At4g35610                  <---------ARR11(3)                     <-                  xxxxxxxxxxxxxxxx>smallRNA(i)              <---------ARR14(3)                     --                  xxxxxxxxxxxxxxxx>smallRNA(s)              --------->ARR11(3)                <------            <---------ARR11(3) <---------MYB46(3)          <------MYB83                      <-------            <---------GLK1(2)<---------MYB52(1)            <------MYB46(1)                   --------      <-----------GT1<---------CCA1(2)<---------ZAT18     <---------AtMYB61               --------->AHL20(2) ----------DOF2   *TSS --------->At4g35610   <---------MYB52(1)                           <---------AHL20(2)   ggctttagtaacaagatgctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcatttatttat  9108400                                                                                          --------->ANAC58                                                                                          --------->ANAC58                                                                                         ------->TEIL                                                                                         --------->SPL7                                                                                         --------->SPL1(2)                                                                                         <-------TEIL                                                                                        --------->MYB52(1)                                                                                       <---------SPL7                                                                                       --------->TOE2(2)                                                                                     <---------------AtSPL8                                                                                     --------------->AtSPL3                                                                                     <---------TOE1(3)                                                                      <---------ICU4 <---------TOE2(3)      <---------ANAC46                                               <---------YAB1  <---------------AtSPL3 <-----------RAV1(1)                                                 --------->ICU4 <---------DOF5.7(2) --------->ALFIN1                                                  --------->YAB1   <---------------- --------ANAC55(2)      <---------ANAC58                          <---------YAB1--------->ANAC58 --------ANAC55(1)      <---------ANAC58                      --------->ANAC55(2) --------->DOF5.7(2) --------ANAC46         <---------ANAC46                      <---------ANAC55(1)--------->TOE1(3) ------->ANAC55(2)<----------DOF2                             <---------ANAC55(2)--------->TOE2(3) ---AHL20(2)   <-----------GT1                                <---------ANAC46  --------->ANAC46 --AHL20(2)   <-----------GT1  <---------ZAT14                <---------ANAC58  --------->ANAC58 ->AHL20(2)<---------ICU4    --------->REM1(2)                <---------ANAC58<---------ALFIN1   <---   tatgtgttgctcatatttatctttttgtgtgtgtatactactatgtgttttgtcttgaagagttgcgtatgataattgttccacgttaacgtacggcctc  9108500                                                                                 --------->ANAC55(2)                                                                            <---------ANAC58                                                                        <---------ANAC58                                                                        <---------ANAC58                                                                      <---------ARR11(3)                                                                      --------->ARR11(3)                                                                     --------->RVE1(1)                                                                     --------->GLK1(1)                             ------->GAMYB                           --------->CCA1(1)              -                           -------->P                                <---------CCA1(1)              <                          <---------ALFIN1                           <---------RVE1(1)             <-                       --------->AtMYB61                             <---------GLK1(1)             <-                 ----------->HVH21                                  <---------ARR11(3)             --   <---------LBD16     --------->TOE2(3)                           <<<<<<<<<RAP2.2      <---------AHL20(2) --SPL14       <---------At4g35610                  --------->ANAC46--------->ARR11(3) --------->AHL20(2) -------DOF2   --------->At4g35610         <-----------GT1   --------->ICU4 <---------ANAC58       --   ttttcttcggacaagaccgatgacacctcaaccccaaaaacatttttgctgtttacacaagtgatatttagatatcttgcttcacttaattttatcaatt  9108600                                         <---------WOX13(1)                                       <---------ICU4                                       --------->ATHB12                                   <--------HAHB4                                   --------->ATHB51                                   <---------ICU4                                   <---------AHL20(2)                                   -------->HAHB4                        ------->MYC3             <---------TOE2(3)     --------->YAB1                        <-------MYC3            <---------AHL20(2)     -------->ATHB1                       --------->TGA1a            --------->AHL20(2)    <---------YAB1                        <---------ANAC46            --------->YAB1        <---------ATHB51                      <---------TGA1a  <---------ALFIN1                --------->ICU4                        --------->ANAC46 ----->NtERF2<---------YAB1    --------->AHL20(2)                       <---------ANAC55(2) ---------RAP2.6(3)          <---------ANAC55(2)                        <---------O2 --------ATERF1(2)           --------->ANAC55(2)                        --------->ANAC55(2) --------ETT(1)         --------->YAB1<---------AHL20(2)                --------->O2        --------- ------->ANAC46         <---------ICU4--------->AHL20(2)                ============================= ------->At1g77200     --------->ICU4<---------YAB1        <-----------GT1        <---------AHL20(2)   gccgacacttgtattaatattgctaattatcacttaattattaattgccaaaaacacgatttaactgctcattcacgtgaatatttgattactcaaaagt  9108700                                                                                       --------->TOE2(3)                                                                                    --------->MYB52(1)                                                                                  <---------MYB52(2)                                                                          <---------ICU4                                                                         <---------ATHB51         ---                                                                         <---------YAB1<-----------TGA1          --------->REM1(2)                         --------->REM1(2) <---------ETT(2)--------->bZIP60(1) ->DOF2  --------->ALFIN1                          --------->ALFIN1   ----------->GT1 <---------bZIP60(1) ==bZIP_DOF             <---------WOX13(1)  ---------->DOF2          <---------------------WRI1  ----   actatttagatgtgtagagagagtcgattgacaaaaaaaaaaaaaaaaaagatgtgtagagagagttcaatgtcgataattgcaaataacgtcagtattc  9108800  Previous    Next  AGI:  At4g16100.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49220.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44865.1); contains InterPro domain Protein of unknown function DUF789 (InterPro:IPR008507) Range:  from: 9105731    to: 9108169    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g16105.1    Description:  pre-tRNA. tRNA-Thr (anticodon: AGT) Range:  from: 9108318    to: 9108391    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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