Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  ------>ZmHOX2a(2)                                                                                =====================                                                                               <---------GLK1(1)                                                                               ======================                                                                               --------->GLK1(1)                                                                               <------ZmHOX2a(2)                                                                              --------->ARR11(3)                                                                              --------->ARR14(3)                                                                              <---------ARR11(3)                                                                              <---------ARR14(3)                                                                              --------->ARR14(2)                                         <---------MYB46(3)                   <---------ARR14(2)                                       <-------PIF5                           --------->AGP1                                       <---------MYB52(1)                     <---------AGP1                                       ------->PIF5                          <---------CCA1(2)                                      <---------DEAR3(2)                   <---------HSFB2a(2)                                      --------->LBD16                   ===============HOX2a_HOX2a                                     <---------DEAR3(1)                 ------>ZmHOX2a(1)                                    <---------LBD16                     ==============HOX2a_HOX2a                                    <------NtERF2                    =================HOX2a_HOX2a                                    --------->ATERF1(1)              ------>ZmHOX2a(1)       <-------                                   <---------RAP2.3(1)               ==================HOX2a_HOX2a                                  <---------DEAR3(1)                <---------ALFIN1        ---------        ---------->DOF2         <-----------HVH21                 ------>ZmHOX2a(1)       <----------    ----------->HVH21          <---------O2                       ====================HOX2a_HOX2a ------>O2                     --------->O2              ------>ZmHOX2a(1) --------->HSFB2a(2) -------O2                     --------->bZIP60(2)       =============================HOX2a_HOX2a ----MYB52(1)             --------->ANAC46               ==============================HOX2a_HOX2a ->TOE2(3)                --------->ANAC58<---------ANAC58        =====================HOX2a_HOX2a ->TOE1(3)                --------->ANAC58<---------ANAC58  --------->MYB46(3)<-----------ARR10    <-   acgtctctgacaaagttgaaatagtctcaagccaagtcgccggtgcttgagccggtctcctaacaatcctcctccttccagatctccctgatttacccaa  9100500                                                                                                    -                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                   <---------MYB52(1)                                                                                 <---------MYB46(3)--                                                                             ----------->HVH21    ---                                            <---------DEAR3(2)              --------->LBD16       ---                                            ------>NtERF2                  --------->O2           ---                                           <---------DEAR3(1)              ===============MYC_MYB ---                                        ----------->HVH21                  ===============MYC_MYB----                                       --------->DEAR3(2)                  <---------O2          <---                                       ------>ZmHOX2a(2)                   <---------ANAC58      ----                                      <------ZmHOX2a(2)                    <---------ANAC58     -----                                     --------->ARR14(2)                    --------->TGA1a      -----    ----------->RAV1(2)              <---------ARR14(2)                    <---------TGA1a      ----- <---------At4g35610               --------->ANAC58                   --------->ZAT14           ----- ============HOX2a_HOX2a           --------->ANAC46                   --------->ZAT2  <---------YAB1< ============HOX2a_HOX2a           --------->ANAC58                   --------->At4g35610       ----- --MYB59                         --------->ANAC46                 <---------ALFIN1<-------GAMYB<----- >ANAC46   --------->YAB1        <---------ALFIN1                 --------->AtMYB61--------->DOF5.7(2) -GT1 ------>ZmHOX2a(1)        <---------ALFIN1             <---------GLK1(2)--------->ALFIN1  ------ ----------GT1                 ----------->RAV1(1)      <-------TEIL  <---------At4g35610   <--------   ttcacctcctgaatcatcttctccatttctcgcccacacgatccgacggctcagtaagtacagaatcaccactgctcccgtggccgttaccattacaccc  9100600  <---------ALFIN1 <------NtERF2 ----->NtERF2 ------->RRTF1(3) ------->DREB2C(2) ------->ANAC46 ------->RAP2.3(3) ------->RRTF1(2) --------ATERF1(2) ------->RAP2.3(2) ------->ATERF1(2) ------->DEAR3(1) ------>ATERF1(1) ------>RRTF1(1) ----NtERF2================HOX2a_HOX2a                                        --------->ANAC55(1) ------>ERF1                                                                  ----------->GT1 ------->RAP2.6(2)                                                            --------->ANAC58 ------>DEAR4(2)                                                              --------->ANAC46 ------>ORA47(2)                                                              <---------ANAC55(2) ------>RAP2.3(1)                                                      <---------HSFB2a(2) ------>RAP2.6(1)                                                   --------->GLK1(2) -->NtERF2 <------ZmHOX2a(2)                                        ------->TEIL ------ATERF1(1)                                                    <---------ARR11(1) ----->LBD16                                                        <---------ARR14(2) -->GAMYB --------->ARR14(2)                                        --------->ARR14(2) ---->ANAC58                                                       <---------ARR14(1) ---->ANAC46                                                     --------->RAP2.6(2) ---->ANAC58                                                   <---------At4g35610 ---------ATERF1(1)                                            --------->At4g35610 --------->ZAT6 ---->DEAR3(1)        <----------DOF2                        <-----------RAV1(2)<xxxxxxxxxxxxxxxsmallRNA(le3) ----MYB55(2)       ------>ZmHOX2a(1)                       ------>ZmHOX2a(1) --------->ANAC55(2) --->MYB46(3) ------>ZmHOX2a(1)                         --------->ANAC46      --------->ANAC58 ---GT1   <---------ARR14(2)    --------->GLK1(1)     <-----------GT1  --------->HSFB2a(2)          -   gccgccatctccgatcctcttcctctttattcagaaatcgattcaaaaatccaatttcactcctcagccgaatctagaaaacgtaacacgattcagcgat  9100700                                                     ------>ZmHOX2a(1)                                                   ------>ZmHOX2a(2)                                                  <------ZmHOX2a(2)                                                 <---------GLK1(2)                                                 --------->ARR14(3)                                                 --------->ARR14(2)                                                 --------->ARR11(3)                                                 --------->AGP1                                                 <---------ARR14(2)                                                 <---------ARR11(3)               <---------ARR11(3)               <---------GLK1(1)           XXXXXXXXXXXXXXXXXXXX>MIR861-3P       --------->GLK1(1)        <------ZmHOX2a(1)  ------->TEIL    <---------YAB1      --------->ANAC58  --------->ANAC58   --------->At4g35610      --------->ANAC58  --------->ANAC58 --------->YAB1                  --------->ZAT2  --------->ANAC58      --------->ANAC46 <---------ICU4                  --------->At4g35610  --------->ANAC58   <---------REM1(2)  <---------ATHB12           ------->TEIL --------->DOF2--------->ARR11(3)       --------->ICU4  <---------YAB1   <---------At4g35610       --   tcgaaagcaaggacgaagatgtcttcacgaatttcgaaactaatcatcagagatcctcataaatgaatgaatcgaagctccaatttctccaaaaatttca  9100800                 --------->LBD16                --------->ANAC46                --------->LBD16                                                         ----------->GT1                <---------LBD16                                                        <---------TOE1(3)               <---------LBD16                          <---------YAB1           <----------DOF2               --------->LBD16                          ------------>CBF         <---------DAG2              <---------LBD16                        *TSS                        --------------->AGL15          <---------GLK1(1)                         --------->YAB1            <-----------GT1          --------->GLK1(1)                     <---------MYB52(1)      <---------AHL20(2)  <---------ARR14(2)                          --------->YAB1         <---------ARR11(3)<---------TOE2(3)  --------->ARR14(2)                        --------->GLK1(2)      --------->ICU4==================== <---------RAP2.6(3)<---------DOF5.7(2)    <---------GLK1(2)       <---------YAB1==================== --------------->AGL1              ---------->DOF2 <---------YAB1--------->YAB1  <---------------AGL15   agccgatttgggaattccccgggaacgttgagagaaggaaagcgagaatcgttatgatatcaatgtttcatgatttttttttactttttaaggtttaaaa  9100900                                                                                     <---------TOE1(3)                                                           --------->ATHB51    <---------------AGL15                                                           --------->AHL20(2)  --------------->AGL15                                                          --------->ICU4      <-----------------AGL2                                  <---------At4g35610     <---------YAB1      <-----------------AGL3                                  --------->At4g35610  <---------YAB1    <------MYB46(1)                       <------NtERF2                  <-----------TGA1   <---------ANAC55(2)                      ------>NtERF2                  --------->YAB1      <------MYB83<---------TOE2(3)               ------->TEIL     <-----------RAV1(2)>>>>>>>>>>GATA-1     --------->MYB46(2)        <------ZmHOX2a(1) <---------At4g35610      <-----------GT1      --------->MYB111(1)     <---------ICU4   <---------DEAR3(2)         <---------YAB1         --------->MYB59     --------->YAB1  <---------DEAR3(1)        xxxxxxxxxxxxxxxx>smallRNA(s)   <-----------------AG  --------->YAB1    --------->RAP2.6(3)       xxxxxxxxxxxxxxxx>smallRNA(s)    ----------------->AGL3< ===============================================================================================MADS_MADS ==============================================================================================MADS_MADS   ttactaataaggacatgaactcgtcggcatctactcaggtgaatcaagggtattatcgtcattatttagataagtaggtaaccatttaaggttaagttaa  9101000                                 --------->ANAC58                                --------->DAG2                            --------->ANAC58                                       <---------AHL20(2)                            <---------ANAC55(2)                                <--------HAHB4                            --------->ANAC55(1)                                --------->YAB1                            --------->ANAC55(2)                                <---------ICU4                            --------->ANAC46                           --------->ZAT18                            --------->ANAC58                           --------->ZAT14                           <-------TEIL                                <---------ZAT14                        --------->CCA1(2)    --------->ARR11(3)        <---------ZAT18                       <---------AHL20(1)    <---------ARR11(3) <------ZmHOX2a(1)  --------->AHL20(2)                       --------->ARR11(3)   --------->YAB1   <---------ICU4   <---------ATHB12                    --------->AHL20(2)     <---------ATHB12  --------->YAB1   --------->ICU4    <----            <---------MYB52(1) ---------->DOF2      --------->ZAT6 <---------------AtSPL8       ----- ---------->DOF2<------ZmHOX2a(1)--------->ANAC58 <-----------GT1  --------------->AtSPL8       ----- ------ZmHOX2a(1)   --------->YAB1  --------->WOX13(1)      <---------ATHB12--------->YAB1     ------   gaggaaagaagaacgttaggaataatatatacgtaaagcaatccaatgatattaacactctaatcaggattagtacactaatcattttattcatataacc  9101100                         --------->AHL20(2)                         <---------AHL20(1)                         --------->AHL20(1)                                                  <-------                         <---------AHL20(2)                                                  <-------                      --------->YAB1                                               --------->MYB52(1)                      --------->AHL20(2)                                        --------->ANAC58                     <---------ATHB12                                           --------->ANAC55(2)               --------->ANAC58                                                 --------->ANAC58              ------->PIF5                                                      --------->ANAC46       --------->At4g35610                                                      <---------ANAC55(2)       <---------At4g35610<---------YAB1                                       --------->ZAT18      --------->MYB59<---------ATHB51                                          <---------ZAT18 -----MYB59<---------ALFIN1                                            <----------DOF2       <------- ---->TOE2(3) <-------PIF5<---------AHL20(2)                          <---------ANAC58  --------->ALFIN1 ---->TOE1(3)--------->ANAC46                   --------->CCA1(2)     <---------ANAC58------->GAMYB ----------->AG--------->ANAC58    <---------AHL20(2)    <------ZmHOX2a(2) <---------------AtSPL8  <-   taaatagttagctccacgagccaataatataatcgaatttatggtggaagataaacacgatcaaacacgatggcttttgagtacgcaacggtgtttcttg  9101200                               --------->ANAC46 <---------TOE2(3)        <----------DOF2 --ANAC46                <---------ANAC58       <---------AHL20(2)     <----------ID1              <- --ANAC58       --------->RVE1(1)    <-----------GT1                 --------->YAB1             <---- --ANAC58       --------->CCA1(1)  <----------DOF2          <---------MYB52(2)      <---------ARR11(3) --------AHL20(2)        <---------ANAC58       --------->AHL20(2)  <---------ATHB12--------->ARR11(3)   tttaatgtattaacaaaaatatccattgctttcacgactttacttcacatttatataaaacaactagccaataacaacaaaatgaagaacttaaatctat  9101300                              --------->ANAC58                           <----------DOF2                              --------->ANAC58                        <-----------GT1                        --------->MYB46(3)                        <---------ICU4   ------->TEIL         --------->ANAC46  ----------->GT1        --------->ICU4  <---------CCA1(2)  <---------WRKY38(1)<-------GAMYB            <---------YAB1 --------TOE2(3)     <---------ZAT18   <---------ANAC58      --------->TOE2(3)                 ------ -----YAB1           --------->ZAT18   <---------ANAC58   <---------GLK1(2)     --------->AtLEC2   taatgtatctatatgttcttgagtccacgaccacgaccagtgcgttgttaaacaaaaatagaacctcataattttcttttccatgtaagataacatatag  9101400  Previous    Next  AGI:  At4g16070.1    Description:  lipase class 3 family protein. similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT3G14075.1); similar to hypothetical protein OsI_001550 [Oryza sativa (indica cultivar-group)] (GB:EAY73703.1); contains InterPro domain Lipase 3, N-terminal (InterPro:IPR005592); contains InterPro domain Lipase, active site; (InterPro:IPR008262); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) Range:  from: 9096742    to: 9100853    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g16080.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45940.1); contains InterPro domain Protein of unknown function DUF295 (InterPro:IPR005174) Range:  from: 9101360    to: 9102899    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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