Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                       <---------AHL20(2)                 <---------AHL20(2)                                    --------->ATHB12              <--------HAHB4                                          <---------AHL20(2)              <--------ATHB1                                      --------->AHL20(2)              <---------ICU4                                 <---------AHL20(1)              --------->YAB1  <---------ICU4                 --------->AHL20(2)              -------->HAHB4  --------->ATHB51               <---------AHL20(2)             <---------YAB1  <---------YAB1             <---------AHL20(2)             --------->AHL20(2)                         --------->AHL20(1)             --------->ICU4--------->YAB1               --------->AHL20(2)                       <---        --------->TOE2(3) <---------YAB1                <---------AHL20(1)                 --------->ANAC55(2)     <<<<<<<<<<GT-3b  <----------DOF2                  --------->AHL20(2)                <-----------GT1 ---------MYB52(1)   <---------ICU4                --------->ICU4 <---------AHL20(1) <---------AHL20(2) ---------DOF2--------->ATHB51xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------AHL20(2) --------->AHL20(2) ------>TOE2(3)  --------->AHL20(2)--------->TOE2(3)   <---------AHL20(2)           --------->AHL20(2) ------GT1   <---------ATHB51--------->ICU4  --------------->AtSPL8   --------->AHL20(2) <---------AHL20(2)   cctttatttttcttaataattaatctttatcataatttcttaactacatagtactaattttattttattttatttattagcacagatttatttacttatt  9049000                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                       <---------ARR14(2)                                                      <------NtERF2                                                    <---------ANAC46                                                   --------->ATERF1(1)                                                   <------NtERF2                                                  <---------ATERF1(1)                                                 <---------DEAR3(1)                                              <---------HSFB2a(2)                                             <---------LBD16                                           <-----------GT1<---------AHL20(2)                             ---------->DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->LBD16                      <---------AHL20(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->HSFB2a(2)                  --------->AHL20(2) ------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ARR14(2)  <----------DOF2   tagttttttttagtatgtggaagttcaagtctaaaggctctatattttccggaggcggatttatttccttcaataggctttctcatttaatacttgtttc  9049100                                                                                          <----------                                                                                         --------->AHL20(2)                                                                                         <---------AHL20(2)                                                                                   <---------TOE2(3)                                                                 --------->YAB1  <---------DOF5.7(2)                                           --------->ZAT18     --------->AtLEC2  ---------->DOF2                                 <---------------AGL15       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                           <---------ARR11(3)               ================================HOX2a_HOX2a                           --------->ARR11(3)               ------>ZmHOX2a(2)  --------->DOF5.7(2)                           <-----------GT1 <---------ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                     --------->AHL20(2)    --------->ZAT14  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <----------DOF2<---------YAB1------>ZmHOX2a(1)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------DAG2 <---------AHL20(2)    <---------ZAT14<---------ARR11(3)  --------->TOE1(3)   <-----------GT1  --------->AHL20(2)----------->TBP   <---------YAB1       <---------ZAT6 <----------DOF2    --------->YAB1  ===============================HOX2a_HOX2a--------->TOE2(3) <---------DAG2------------>CBF  --------------->AGL15--------->YAB1  <----------ID1 <------ZmHOX2a(1)   atactttacctttcttacacaattaaaattatcttctcctataagtatactgactctcatgatccattcaaaacgactagcgttaaaggatttaaacatt  9049200                         <----------DOF2                     <-----------GT1                   --------->YAB1              --------->LBD16                                                                    <---             --------->HSFB2a(2)      <---------AHL20(2)                                      <xxxxxx             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             --------->LBD16          --------->AHL20(2)          <---------GLK1(2)          xxxxxxxx -GT1       <---------LBD16      ------------>CBF      ---------->ID1  <-----------GT1    <xxxxxxxxxx   tgtttccctgttttccccgaattatacctttcttatacaattaaacttatctattttgttgtaatctagaattttacatgtactgtatatgtatacccat  9049300                                                                                              <------                                                                                              <------                                                                                              -------                                                                                              -------                                                                                         <---------TOE1(1)                                                                                 <-----------RAV1(1)                                                                             <------NtERF2    -------                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                <-------TEIL                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               --------->GLK1(2)            --------->ANAC58 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -----        <---------ANAC58         --------->YAB1        ---------->DOF2     <---------ANAC46   <------        <---------ANAC58       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  ==================================   <------------CBF<---------At4g35610      --------->ANAC58 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<----- <-------TEIL xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------WRKY12xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------ICU4 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <------ZmHOX2a(1) xxxxxxxxxxxxxxxsmallRNA(si3)  --------->AtLEC2     <-----------HVH21xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ================================== xxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<------ZmHOX2a(1)     <---------TOE2(1)   aagtacattgacttgagattcagttcatgagccattcaaaacgaccacgaccagcgtcaaaggctgtgaggaagatggcgcaaatgttgctacgaggatc  9049400                                        ------>ZmHOX2a(2)           <---------ANAC46           <---------ARR11(3)      --------->ALFIN1                --------->ARR11(3)      <-----------RAV1(1)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ANAC58                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ANAC58                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ANAC46      ------>ZmHOX2a(2) ---ARR14(2)             <------ZmHOX2a(2)    ------>MYB46(1) ---ARR11(3)            <---------ARR14(2)  <---------MYB59 -->GLK1(2)<---------ANAC58          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -->ARR11(3)            --------->ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------bZIP60(1) -->ARR14(2)           <---------RAP2.6(3)-------->P                                   xxxxxxxxxxxxxx ->ZmHOX2a(2)    <-------GAMYB   --------->MYB111(2)                             xxxxxxxxxxxxxxxx>smallRNA(i) ---AGP1   <---------ANAC58      --------->MYB46(2)                          <---------ALFIN1   <---- ==HOX2a_HOX2a  <---------MYB46(3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <-----------GT1  --------->bZIP60(1) -ZmHOX2a(2)    <---------DEAR3(1)<------MYB83------>MYB83                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) =HOX2a_HOX2a   --------->MYB52(2)<------MYB46(1)                --------->REM1(1)    <---------At4g35610   tatgagtcgtgttgctggtcgttgccgatctgagtttggtgatctaccaaattggtgtttatccactacaactgtttctccacttctccgatgatgtcgt  9049500                                              ------->TEIL                           <----------DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    <-                         <---------YAB1   ------->TEIL                               <----------DOF2                       --------->YAB1--------->YAB1                          <-----------GT1       <-                  --------->TOE2(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------AHL20(2)    ---- xx>smallRNA(i)   <---------DAG2  --------->WOX13(1)                <---------ARR11(3)       <------- -----MYB52(1) <-----------GT1   ------>ZmHOX2a(2)                  --------->ARR11(3)       --------   tagtattcttctccgattcaccttatcatctttgatctatcatgtatgtatgtgtatatttgtttttgaatatctattttttctatacttttacaaatcc  9049600                                                                                              -------        <----------DOF2   ------>MYB83                                                       <-------        <---------DAG2    -------->P                        <----------DOF2     --------->ARR11(3) ---------DOF2            ------>MYB46(1)              <-----------GT1          <---------ARR11(3)  - --------DAG2            ------>ZmHOX2a(1)          <---------AHL20(2)        <---------AHL20(2)    - -->ZmHOX2a(1)       <-----------GT1          <---------ANAC58               --------->AHL20(2)------ --ARR14(2)  <---------ANAC58                 <---------ANAC58            --------->YAB1    <-------- ->ARR14(2)  <---------ANAC58            <----------DOF2---------->ID1 <----------DOF2      ---------   tctttttcaacttttgcttattttttcctaccaaaaaaaaaaacttttgcttatttttttctctttctaatctcttttataaaatctttgaatttaacgg  9049700                                                                          --------->TOE2(3)   <---------TOE1(2)                                                      <----------DOF2   <---------TOE2(2)                                                      --------->TOE1(3) -->ANAC46                                                             <-----------GT1 --LBD16                                                              --------->AHL20(2) -------->YAB1                                              <---------At4g35610   --------->AHL20(2) -------->ATHB12                                            --------->At4g35610 <----------DOF2 ->GAMYB                                                 <---------At4g35610    --------->TOE1(3) ---GT1                                                  --------->At4g35610    --------->TOE2(3) >MYB52(1)                         <---------YAB1       <-----------RAV1(1)--------->DOF5.7(2)   aatcataggttttttttttcttacataccattcgcttatgattccaactaatttgtatgtgctgctgtacaattaactttaactttaaatcagttttatt  9049800                                                                                       --------->ANAC58                    <---------WOX13(1)                                                 ----------->GT1                  --------->ATHB12                                                     --------->ANAC58                  <---------AHL20(2)                                                 --------->MYB52(1)                 <---------AHL20(2)                                               --------->ANAC58                 --------->AHL20(2)                                               --------->ANAC58                <---------YAB1                                             ---------->DOF2             <---------YAB1            --------->ANAC58                <---------------AGL15         <---------ANAC58              --------->ANAC58                --------------->AGL15         <---------ANAC58  <-----------GT1           <-----------GT1  <-----------------AGL3       <-----------GT1     <-----------------AGL1 <----------DOF2    --------->At4g35610     --------   tgctcaaattttcttgttattaattggtttttcattttggcaagtactcttccttttaccactgtatgagtagcttaaaaaggaacgaaacgaaaataaa  9049900  Previous    Next  AGI:  At4g15970.1    Description:  Identical to Uncharacterized protein At4g15970 [Arabidopsis Thaliana] (GB:P0C042;GB:O23446); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63244.1); contains domain REGULATORY PROTEIN (PTHR10483:SF6); contains domain PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN (PTHR10483) Range:  from: 9049375    to: 9051382    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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