Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <---------GLK1(2)   --------->GLK1(2)                               --------->ANAC58     <---------GLK1(2)                               --------->ANAC46     --------->ARR14(2)                               --------->ANAC58     <---------ARR14(2)                       <---------ICU4         <---------GLK1(1)     --------->AHL20(2)          -----                       --------->YAB1        <---------ARR11(3)    --------->AHL20(2)        -------- ----DOF2            <---------ARR11(3)      --------->ARR11(3)--------->AHL20(2)  <---------GLK1(2)   tctctacaaattgacaaaaacaaaatcatcaccaagaaactccataagatttcagattctggtcaaaaaataaaaaatactcacagaattggtagcaaca  8996200                                                                                              <------                           <-----------RAV1(1)                <----------DOF2              ----------                  <-----------ARR10              <----------DOF2                --------->ANAC55(2)                  <---------ARR14(2)             --------->TOE2(3)              --------->ANAC46 -->GAMYB         --------->ARR14(2)    <-----------HVH21     ------>ZmHOX2a(1) --------->ANAC58 --->RAV1(1)     <---------CCA1(2)   <---------ATHB12      <---------ATHB12     --------->ANAC58   gagaagagtgatgaattgcaaatctccttgtgttgttcaatgagtcacatactttaatccaatcctttgatgctaattcttcaagtaatctctgtgatag  8996300                                                                                      ------>ZmHOX2a(2)                                                                                      <--------------                                                                                     <------ZmHOX2a(2)                                                                                     --------->At4g35610                                                                                    --------->ARR14(2)                                                                                    <---------AGP1                                                                                    --------->GLK1(2)                                                                                    <---------ARR14(2)                                                                 <---------ANAC46   <---------ARR11(3)           --------->YAB1                                  <---------AHL20(2)      <------ZmHOX2a(1)           <---------ICU4                                  --------->AHL20(2)  <-------TEIL          --------->ICU4                                  <---------AHL20(1)  --------->CCA1(2)        <---------ICU4                                    <---------AHL20(2)  --------->GLK1(2)       <---------ATHB12                                   --------->AHL20(2) <---------ARR14(2) ---WOX13(1)                    --------->ANAC46          --------->AHL20(1) --------->ARR14(2) ->HVH21--------->YAB1   <-----------GT1    --------->GLK1(2)    ----------->RAV1(2)--------->ARR11(3)   attgaatcaataatcatcaaaaacaaattactacacataaattcagaatcaattgagaaatttaattacctggacagaagattcaggatctgaaaatggt  8996400                                                                                    <----------DOF2                                                                                   <---------ANAC58                                                                                   <---------ANAC46                   --------->ARR14(2)                                              <---------ANAC58              --------->MYB52(1)                    <---------MYB46(3)          <--------P           --------->ANAC46                 ----------->RAV1(1)                <-------GAMYB           --------->ANAC58                ----------->HVH21                   <---------MYB52(1)   -           --------->ANAC58           ----------->RAV1(1)                     --------->LBD16       <   --------->GLK1(2)          <---------DEAR3(2)   <--------P           ------>MYB46(1)             -  <---------GLK1(2)<---------ARR14(2) <---------ALFIN1                  ------>MYB83----------------- ---AGL3 --------->At4g35610<---------------------WRI1     <-----------TGA1 <---------LBD16         <   ttgagattctcagaagcaacgtattcgacggtcgattcagccacagcgacagggttgttttcgtcatttagaccaatctccggttgctttgagagtttgg  8996500                         ------>ZmHOX2a(2)                   <---------ZAT6                         ==============================HOX2a_HOX2a                             <-----                 ------>ZmHOX2a(1)                   ------->GAMYB                  <---------YAB1 <---------GLK1(2)<-----------HVH21                 --------->ANAC58            <---------ARR11(3) -------->ZAT2   ==============HOX2a_HOX2a          --------->ANAC58            <---------GLK1(2) ---------ZAT2   ===============HOX2a_HOX2a         --------->ANAC46            --------->ARR11(3) -------->At4g35610     <------ZmHOX2a(2)       ------>ZmHOX2a(1)              <---------RVE1(1) ---->WRI1 <---------MYB46(3)                  --------->TOE2(3)--------->CCA1(2)--------->GLK1(2)<-- ---------At4g35610     ===============================HOX2a_HOX2a    ---------->DOF2--------->ATHB12   ccagcttcttaggtcgttcctgtgagatcggaagagcgttttcaatgttcctcaacgccattagagataagagaaagagagagattttgatttgaaattc  8996600                                 --------->TOE1(3)                       ----------->GT1                    --------->ALFIN1              *TSS  <---------ANAC46                                                                -             <---------YAB1      --------->TOE2(3)                                                  -           --------->YAB1    ---------->DOF2                           <-----------TBP             --           <---------ICU4<--------P                              ---------->ID1                   ---          --------->ICU4<-------GAMYB                        <---------DAG2                  <------ZmHOX2a(1)        --------->YAB1 <---------ANAC46  ---------->DOF2 <-----------GT1<---------AHL20(2)  <-------- --TEIL--------->ICU4 <------NtERF2   <---------------AGL15  <----------DOF2                --------- -------MYB52(1) <-----------RAV1(1)  --------------->AGL15 <---------DAG2                 ----------   gttaggggaataataatcaatggtggggttgaaaagcttaatataaagagaaatttttgttacctttttcgcattttatattcaaaaattcaagaggaaa  8996700                                                                                ----------->GT1              <------MYB83                          <------MYB46(1)      <-------GAMYB    ---------->DOF2                            <---------MYB46(3)     <-------TEIL<----------DOF2 -------->ANAC58  <---------TOE1(3)      --------->ANAC46            --------->ARR14(1) -------->ANAC58  <---------TOE2(3)      --------->ANAC58           <---------GLK1(2)               - ------->DAG2 <---------MYB46(3)         --------->ANAC58 <---------AtLEC2<---------MYB52(1)        - ------->DOF2 <------MYB46(1)      <-----------HVH21<------MYB83    --------->ARR14(2)              - --ID1      <---------MYB52(1)    ------->GAMYB<---------DEAR3(2)   --------->ARR11(1)              - -->GT1    <-------GAMYB         --------->MYB46(3)--------->MYB59----------->ARR10               --- -------------->ANAC81         --------->MYB52(1)<---------MYB52(1) <---------ARR14(2)          <----   aaaagcaaaagaccgttggtaaggttttggctccaacggtcacaagcatcggttcggtttacatgaattagattcggttatctggtttattgttcaattc  8996800                                                            <---------TGA1a                                                            --------->O2                                                            --------->TGA1a                                                            --------->ANAC58                                                            =========================================                                                            <---------O2       <---------DEAR3(2)                                   --------->ANAC58   --------->bZIP60(1)                                      --------->ANAC46   <---------bZIP60(1)                                    <---------ALFIN1   <---------O2                                         <---------ALFIN1   --------->O2                                         --------->DEAR3(1) -------->ANAC58                                        ----------->RAV1(1) -------->ANAC46           ----------->HVH21          ------>NtERF2 ---------->HVH21          --------->ANAC58          --------->ANAC46       <---------At4g35610    <- -------->ANAC58           --------->ANAC58     <----------DOF2        <---------At4g35610        <-- ------>ANAC46   <----------DOF2                ======================bZIP_DOF     <-----------GT1<-- -------GT1--------->YAB1--------->MYB52(1)     <---------DAG2         --------->At4g35610 ----------   acacgacgtcgtttcataacttttaagaaacgacagcgtctaagttatcacttttgcgccacacgcgagtgagagctaagctaattctccgtcttcaatg  8996900                                                              ------>NtERF2                                                             --------->bZIP60(1)                                                            --------->RAP2.3(1)            ------------>CBF                               --------->LBD16      <----------DOF2                                    <---------LBD16   <-----------GT1                              <---------ANAC58  <---------YAB1 =========bZIP_DOF        ------->TEIL          <---------ANAC58  --------->ICU4 ---------DOF2           *TSS                  --------->ATHB12<------NtERF2 -------ANAC58       <------------CBF  <<<<<<<ZML2     <---------ARR14(2)                         <<< -------ANAC58 <------------CBF     --------->HSFB2a(2)--------->GLK1(2)                       ------ -->CBF     --------->LBD16        --------->LBD16     --------->ARR14(2)<---------WOX13(1)    <-----   gcttttctcttttccccaattgaaattgaatctattccctagaacaaattgattgtgaatccggcgtcatttttgatggaccaagagtatcgaaactcta  8997000                                                      <---------ALFIN1                   ------>MYB83                       --------->AtMYB61                   ------>MYB46(1)                    --------->DEAR3(1)                  ----------->RAV1(1)                --------->MYB46(3)                 --------->AtMYB61                   <---------MYB55(2)                --------->MYB46(3)                 --------->AtMYB61              --------->DEAR3(1)                   --------->DEAR3(1)            <-----------ARR10             --------->MYB46(3)                    <---------ALFIN1          <------NtERF2            ------->TEIL                     <---------ARR14(2)             --------->MYB52(1)           --------->ANAC46                  --------->ARR14(2)             ------>NtERF2         --------->ANAC58                    <---------TCP20         ------->GAMYB        --------------->AtSPL3             <---------DEAR3(2)        --------->AtMYB61      ----------->HVH21   --------->YAB1   <---------MYB46(3)   ------>ZmHOX2a(1)--------->ARR14(2)     <-----------HVH21    <---------ICU4--------->MYB52(1)     --------->ANAC46  <---------ARR14(2)   <---------DEAR3(1)  --------->YAB1   ------------>AtMYB77--------->ARR14(2)  <---------MYB52(1) <<<<ZML2--------->ANAC58<---------YAB1----------->TGA1   <-----------HVH21<---------ALFIN1 --->HSFB2a(2)--------->AtMYB61        ----------->HVH21 --------->DEAR3(1)--------->DEAR3(1)   ----- ----HSFB2a(2)<---------ALFIN1    --------->YAB1  --------->MYB46(3)--------->MYB46(3)  ------>ZmHOX2a(1)   gaacgacggtgacgcaccaccaacatcatcatcaaatgagaatgacggttccaccaccaccgtctcctcaaccatcgccaccggttcttcctcatgctga  8997100  Previous    Next  AGI:  At4g15830.1    Description:  binding. similar to binding [Arabidopsis thaliana] (TAIR:AT3G01450.1); similar to hypothetical protein OsI_004940 [Oryza sativa (indica cultivar-group)] (GB:EAY77093.1); similar to Os01g0931200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045295.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024) Range:  from: 8995126    to: 8996614    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g15840.1    Description:  protein binding. similar to Os01g0932600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045299.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70967.1); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain Kelch related (InterPro:IPR013089) Range:  from: 8996925    to: 9001053    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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