Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                             --------                                                                                            ---------                                                                                            ---------                                                                                          <---------MYB111(2)                                                                                          <---------MYB55(2)                                                                                          --------->MYB46(3)                                                                                          <---------MYB111(1)                                                                   <---------AHL20(2)    ------>MYB46(1)                                                                --------->YAB1           ------>MYB83                   <---------ICU4                              <---------YAB1         --------->MYB46(3)                  --------->ICU4                              --------->AHL20(2)     ------->TEIL                  <---------YAB1                              <---------AHL20(2)  <---------ATHB12                --------->YAB1                               --------->YAB1     --------->WOX13(1) <-               <---------YAB1                            --------->AHL20(2)   <---------ATHB12  -----            --------->WRKY38(1)                          <---------AHL20(2) --------->WOX13(1)-------     <--------ATHB1--------->ATHB51    ---------->DOF2<----------DOF2     <------ZmHOX2a(2)------->GAMYB   tttcgaataattcgttgatcataatttgcattctccaaattcaaagaacatagaagcttttaattttaataaatcgatcaatcaatgaaccaacaaccaa  8984500                    <-------TEIL                --------->ARR11(3)                <---------ARR11(3)                --------->AHL20(1)     --------->AHL20(2) ->MYB46(1)  --------->AHL20(2) ->MYB46(3)  <---------AHL20(2) >ANAC58   --------->AHL20(2)                                                        <-----------GT1 >ANAC58   <---------AHL20(2)                           <------NtERF2              --------->AHL20(2) ---------DOF2 <---------AHL20(2)         <----------DOF2        <----------DOF2   <---------AHL20(2) ->MYB83 <---------AHL20(2)     <----------DOF2        ----------->GT1       --------->YAB1 >GAMYB  --------->AHL20(2)  <-----------GT1       <---------LBD16         --------->AtLEC2   gctttttttatatatatatatattcatcttatttcttttcattcctttttttttggggggcaaaattcttttcattcattcaaaatttatcaattccact  8984600                                                               <-----------HVH21                    -                                                              <---------ANAC58                      <                                                              <---------ANAC58                      -                                                     --------->ANAC58    <---------AHL20(2)     -----                                        <------MYB83 --------->ANAC58   --------->YAB1<---------CCA1(2)                            <----------DOF2          ----------->GT1  --------->AHL20(2)       ------                     <---------AHL20(2) <------MYB46(1)       <---------ANAC55(2)--------->WOX13(1) <                    --------->AHL20(2) --------->MYB111(1)    --------->ANAC46 <---------YAB1 -------   aatttcaaattcgagccttatataaaatttctttcatttagttggtagcatattcaagtaaaatgcgtcacatataatattgtcattcatctcttatcct  8984700                ----------->GT1     --------->AHL20(2)                                                     <---------O2     --------->YAB1                                                         --------->TGA1a --------->AHL20(2)                                                         <---------TGA1a <---------AHL20(2)                                                         --------->O2 -------->AHL20(2)                                               =====================bZIP_DOF     <- ---------AHL20(2)                               --------->DAG2  <---------DAG2         ----------->GT1 -------->AHL20(1)                              ======================================bZIP_DOF ------ ->ZmHOX2a(1)  --------->DAG2          <---------ZAT14----------->GT1   <-----------HVH21--------->TOE2(3) --->TOE2(3)  ---------->DOF2         <----------DOF2--------->ZAT18   <---------ZAT6   --------->YAB1 ---------AHL20(1)       ----------->GT1        ---------->DOF2  <----------DOF2 <---------ANAC46  -- -->YAB1   --------->AHL20(2)         ================================================bZIP_DOF<------   aatttaataaaaaataaaaagtcaaaaacgaaaatttagactttagtgggaaaagcgcgttaaacaacttttagtgtcaagtggcataaatcgtaaataa  8984800           ------------>CBF         <---------ZAT6      ------>ZmHOX2a(1)                                           *TSS --------AHL20(2)                                              --------->AHL20(2) --->AHL20(2)                                  <----------DOF2 --------->YAB1                       - ------->AHL20(2)    <---------ATHB12 <-----------GT1     ------------>CBF                   -------- ---AHL20(2)     ------------>CBF<----------DOF2     <----------DOF2                         --------   tataaatcctagtggcaatttcaataactcattctcttttaaaccatttctttctctttcttcaataaaacttttgaaacctccaaaaaaaaaaacctca  8984900                                                                                                  ---                                                                                                  ---                                                                                               ------                                                                                             <-------                                                                                            <--------                                                                                           --------->At5g28300                                                                                          --------->RAP2.6(2)                                                                                          --------->RAP2.3(2)                                                                                         --------->RAP2.3(1)                                                                                        --------->ABI4(1)                                                                                        ------>NtERF2                                                                                       --------->RAP2.3(3)                                                                                       --------->RRTF1(3)                                                                                       <---------DEAR3(1)                                                                                       --------->RAP2.3(2)                                                                                      --------->DEAR4(2)                                                                                      --------->RAP2.3(1)                                                                                      --------->ORA47(2)                                                                                      --------->ERF1                                                                                     <---------RAP2.3(1)                                                                                     <---------ATERF1(1)                                                                         <---------ALFIN1<------NtERF2                                                      --------->YAB1    <---------ZAT18--------->ANAC46                                                      <---------ICU4  --------->ORA47(1)<---------ATERF1(1)       >>>>>>>>>TBF1                                 <---------YAB1  --------->DEAR3(1)--------->DEAR3(1) --------->DOF2                                   --------->ICU4   <---------At5g28300--------->ATERF1(1) ->TOE1(3)                         --------->ANAC46--------->YAB1 <-----------GT1   --------->ANAC46 ->TOE2(3)---------->DOF2 <------ZmHOX2a(1) <---------MYB52(1)<-----------ARR10<---------YAB1--------   gagaaagaagaagaaagaaacaatgagaggactctccacaaaacccgttgcgataatcatcgcaattctcaccgtccacttcttattcgccgccgtaacc  8985000         ------>NtERF2         --------->LBD16        <---------DEAR3(1)       <---------LBD16      ------>ZmHOX2a(1)      ==========================HOX2a_HOX2a                                   <------ZmHOX2a(1)   <---------ATHB12                                                           =======================  <---------ARR14(2)     <------ZmHOX2a(2)                                 <------NtERF2  --------->ARR14(2) --------->DEAR3(2)                               --------->ANAC46 --->MYB46(1)       --------->SPL7                    ------>NtERF2   <---------DEAR3(1) --->MYB83        <---------SPL7                     --------->DEAR3(1) <---------LBD16 --->MYB46(3)    <---------ANAC58                 --------->DEAR3(1) <---------LBD16   --------->HSFB2a(2) --ARR14(2)      <---------ANAC58            --------->SPL7    ------>ZmHOX2a(1)       <---------HSFB2a(2) -MYB52(1)      <---------------AtSPL3    ------->GAMYB   <---------ZAT18<---------DEAR3(1) ->ARR14(2)     --------------->AtSPL3 --------->MYB52(1) --------->ZAT18<---------ANAC46   tcccaatcctccggcgatttcgtaccgatcgagtcgaaatgcaacggtaccatcgccgagtgctccttatccacggcggaggaagagttcgagatggact  8985100                                                                                        <-----------ARR10                                                                                        ------->TEIL                                                                                    <------NtERF2                                                                                    ------>NtERF2                                                                                    --------->RAP2.3(1)                                                                                   <---------ORA47(2)                                                                                   <---------ATERF1(1)                                                                                   <---------DEAR4(2)                                                                                  --------->ALFIN1                                                  <----------CDC5                 <---------DEAR3(1)                                                  =====================================MYC_MYB              <---------ARR14(2)                 --------->At4g35610             ------>NtERF2              <-----------ARR10                  <---------At4g35610            <---------bZIP60(2)              --------->ARR14(2)               --------->ABI4(2)                <---------O2           <---------ANAC46                    --------->ZAT18               --------->ANAC46           <---------ANAC58                    --------->ZAT14               <---------TGA1a           <---------ANAC58                    <---------ZAT14               <---------O2--------->At4g35610        ------->GAMYB                          <---------ZAT18               ----------->HVH21   <------ZmHOX2a(2)                  --------->ANAC46                       --------->O2<---------At4g35610  <---------ARR11(3)                  --------->ANAC58               <---------ANAC58 ------>NtERF2  --------->ARR11(3)                  --------->ANAC58 <------ZmHOX2a(1)     --------->TGA1a     <--- =========HOX2a_HOX2a   --------->MYB46(3) <---------DEAR3(1)        <---------ANAC58 --------->ABI4(2)   ctgagatcaacaggcgtattttagcaacaacgaagtatataagctacggtgcgctgaggagaaacacagttccttgctcacgacgcggcgcatcttacta  8985200                <-----------RAV1(2)             <---------At4g35610             <---------GLK1(1)             --------->At4g35610             <---------ZAT2         --------->ALFIN1       <---------ANAC46           <---------ANAC58       ============================================bZIP_DOF       <---------bZIP60(2)        --------->O2       <---------TGA1a            ===================================================bZIP_DOF       --------->TGA1a            =========================bZIP_DOF       <---------O2               <---------ANAC58       --------->O2               =================bZIP_DOF      <------NtERF2               <---------TGA1a     <---------RAP2.6(3)          --------->TGA1a     ------>NtERF2                <---------O2                                       ------->TEIL <--    --------->DEAR3(1)    --------->TOE2(3)                               <----------DOF2      <-----    ----------->HVH21    <---------ICU4 <----------DOF2     <-----------RAV1(2)  --------------->AtSPL8 ------YAB1  --------->ZAT2------>ZmHOX2a(1)    <----------DOF2      --------->GLK1(2) <----------DOF2   caattgccgacgtggagctcaggctaatccttactctcgtggctgtagcgctattactcgttgcaggcgataatctctttctctatgtactttaaaattt  8985300                                                            <------MYB46(1)                                                        --------->ATHB12                         <---------YAB1                <---------YAB1               <---------AtLEC2       <---------GLK1(2)--------->AHL20(2)    <---------AHL20(2)       <---------YAB1 ---------GT1      <---------YAB1        <---------GLK1(2)<---------WOX13(1)    <----------DOF2 ----ICU4  <----------DOF2  <-----------GT1  <---------YAB1 <------MYB83     <-----------GT1       <-   ttactctcaaattcttttgttttgatttttatacaatttttcagattattatttgttttgattggtgtttactatgtttatactttgcattgcaatatag  8985400  Previous    Next  AGI:  At4g15800.1    Description:  RALFL33 (RALF-LIKE 33). similar to RALFL23 (RALF-LIKE 23) [Arabidopsis thaliana] (TAIR:AT3G16570.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70986.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83593.1); contains InterPro domain Rapid ALkalinization Factor (InterPro:IPR008801) Range:  from: 8984866    to: 8985413    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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