Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->AHL20(2)    <---------AHL20(2)            <---------RVE1(1)   --------->YAB1                --------->ARR14(2)  <---------YAB1                 <---------ARR11(3)                      --------->TOE2(3) -------->YAB1                   --------->ARR11(3)                    <---------ARR11(3) --------YAB1                  ----------->ARR10 <---------DAG2  --------->ANAC58 ------>AHL20(2)     <---------ICU4              <----------DOF2 --------->ANAC58 ------ICU4          --------->ATHB51      <---------ZAT6        --------->ANAC46 -----YAB1          --------->ICU4<---------CCA1(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------- ---->ICU4<-----------GT1    ---------->DOF2 <---------MYB52(1)--------->ZAT6   ----------->GT1   tattataaaaatttactatgccataatttcgaaaagatattcttactgttacttttcttcttgtaacactcaatttcttaactagtatattctattttgt  8949100                                                                                      --------->PCF2                                                                               <---------ANAC58                                                                               <---------ANAC58                                                                               <---------ANAC46                                                                               <---------ANAC55(2)                                                                              <---------LBD16                                                                         <---------AHL20(1)                                                                         --------->AHL20(2)                                                                         --------->AHL20(1)                                                                         <---------AHL20(2)                  --------->AHL20(2)                                    --------->AHL20(2)                  <---------AHL20(2)                                  --------->TOE2(3)        <-----       --------->GLK1(2)                                             --------->ATHB12------>NtERF2       --------->ARR11(3)                                            <---------ICU4  <------NtERF2       <---------ARR11(3)         <---------ATHB51                   <--------HAHB4--------->ALFIN1      --------->RVE1(1)      ----------->GT1                        --------->ICU4 <---------ANAC58  --------->AHL20(2)       ----------->GT1                          <---------YAB1 <---------ANAC58 --------->AHL20(2)<---------AHL20(2)  ----------->GT1            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---->GT1     <---------AHL20(2)  --------->ICU4            <----------DOF2  --------->MYB52(1)------   aaaataaaaaatctacttaattttatgtatagagaaataatgggtaacaaattttgtctatactttaggcatcattaaattacgggcgggcctacatata  8949200                                          --------->GLK1(2)                                   ---------->DOF2                                 --------->LBD16                                --------->HSFB2a(2)                                <---------HSFB2a(2)                                   <---------TOE2(3)                                --------->ANAC46                            --------->ARR11(3)      <                               <---------LBD16                         --------->TOE2(2)            -                             --------->ARR11(3)                        --------->TOE2(3)            -            --------->TOE1(2)--------->ARR14(2)                        --------->TOE1(2)  --------->AHL20(2) ----AHL20(2)                <---------ARR14(2)               ------>ZmHOX2a(1)   <----------DOF2   < --->AHL20(2)               <---------GLK1(1)        <-----------RAV1(1)    <---------ARR11(3) ------   aatatgggtttatacttacgacttatttgaatatccggaaagagagtctatctatgtgttgttcctccctaaacctaagatttactttgagattaaaaaa  8949300                 <----------DOF2                ------>ZmHOX2a(2)              --------->ARR11(3)              <---------ARR11(3)              <---------ARR14(2)              ------->TEIL              --------->ARR14(2)              <---------AGP1                      <----------ID1                                    < <---------AHL20(2)                             ---------->DOF2                             <-------- ---------AHL20(2)                        <---------ZAT6        <---------ZAT6             --------->AHL20(2) -------->AHL20(2)                        ----------->GT1 <---------ARR11(3)               <---------AHL20(2) -------->AHL20(1)               ==================================================================== ---------AHL20(1)               --------------->AGL15    --------->ARR11(3)           <---------AHL20(2) --->AHL20(2)<---------CCA1(2)   <---------------AGL15---------->DOF2<---------YAB1    --------->AHL20(2)   aataaaattggccatggatcttttgatcagtctttctccatttagtgttaaaaagaaaaagatttagtgttatgaaatacggtattcaaaaaattaaatg  8949400                         ----------->GT1                        ----------->GT1                      ---------->DOF2                 --------------->AGL15                ----------------->AGL3              <---------WRKY18(1)             --------->WRKY12             --------->WRKY45             --------->WRKY38(1) <----------ID1            <---------WOX13(1)   --------->ANAC58           <---------ANAC58      --------->ANAC58           <---------ANAC58--------->AHL20(2)       <------------CBF--------->DAG2---------->DOF2       ---------->DOF2                    <------ ------ZmHOX2a(1)<---------------AGL15                    *TSS           --------->CCA1(2)   <------- -AHL20(2)<---------MYB46(3)     --------->ANAC46   <---------ZAT14     --------->ARR11(3)   <------- ================================MADS_MADS          --------->ZAT14     <---------ARR11(3)   <-------   gaggaagcccattggttgaccaaaaaaagttaaatacgaaaaagaagtagacacagtactaaaaagaatatagagatatagtatcaacacaaatgtcgtc  8949500                                      <---------ARR11(3)             ---------->DOF2                               --------->GLK1(2)                <---------ATHB12                           --------->YAB1                   --------->MYB46(3)                          <---------YAB1                    <---------------AGL15                        --------->YAB1<---------ARR14(2)    --------------->AGL15 ---SPL7                <---------ICU4--------->GLK1(2)    ----------------->AGL2 --ANAC46              <---------ATHB12                    ----------------->AGL1                   - --ANAC58              --------->ICU4 --------->ARR14(2)--------->WRKY12       --------->AtLEC2     < --ANAC58              <---------ATHB51  ----------->GT1--------->WRKY38(1) <-------TEIL           --   caccatttctcaaaacaatagtccaataatgaaaatccaaaatctgtaacatgaccaattgacccaatgaagaaagggttcatccaaaatgtccatttag  8949600                                                                                          --------->MYB46(3)                                                                                         -------->P                                                                                     <---------ARR14(2)                                                                                     --------->ARR14(2)                                                                                     <-----------ARR10                                                                <---------ANAC58     --------->GLK1(2)                                                                <---------ANAC58    <---------GLK1(2)                                                             <----------DOF2     --------->HSFB2a(2)                                                       --------->AtMYB61         --------->YAB1     < ------>PIF5                                  <---------At4g35610             <----------DOF2------>MYB83 -------PIF5  <---------MYB52(1)              --------->At4g35610          --------->ANAC58  ------>MYB46(1) --------->RAV1(2)---------->ID1         <----------DOF2---------->DOF2    --------->ANAC58--------->AtMYB61   cccctgcaacttctctgttcgtccctcagtacaaaaacgacttctttcatctcaaaaccaaagctttcttggttcacaagctttcagaatctaccaacgc  8949700                                                   <---------ALFIN1                                                 ----------->RAV1(1)                                                ----------->HVH21           <-----------GT1                     <---------------------WRI1        ------->TEIL                       --------->HSFB2a(2)     --------->ANAC58                      <---------HSFB2a(2)     --------->ANAC46                    <-------TEIL        --------->At5g28300     --------->ANAC58                 <---------ANAC58    <---------At5g28300                 ------- ----------DOF2                       <---------ANAC58<----------DOF2              --------->MYB59   tgctttcacgaatttactacatactctgactctgaaacttgggttcgcgagcgacactttcactgtgaatcacctagttattagttatgtcaagctcaaa  8949800            --------->ANAC58            --------->ANAC58                        <---------ANAC46            --------->ANAC46                        <---------AtLEC2         <---------ZAT18                       ----------->GT1         <---------ZAT14                  ------>MYB46(1)       --------->ANAC46                   ------>MYB83   ------->TEIL     --------->ZAT6                    ----------------->AGL2         <---------LBD16     <---------ALFIN1                  ----------------->AGL3   <---------MYB52(1)            ------- --->DOF2--------->ZAT14               <-----------------AGL3  <-------GAMYB  <-----------GT1 -------   gaaatcaacactgcacgcaaactgtttgatgaaatgtgtgaaccaaatgtggtttcatggacttcggttatttctgggtataacgacatgggtaaacctc  8949900                                                                  <---------ANAC58                                                                  <---------ANAC58                                  --------->CCA1(2)          ------->MYC3                               <---------YAB1            <---------ZAT14                          <---------AtLEC2               --------->ZAT18                   <---------At4g35610                   <---------ZAT18      <----------DOF2    <-------TEIL                <---------ICU4 -->TOE1(3)      <---------HSFB2a(2)                <---------ATHB12         ---------->DOF2 -->TOE2(3)      --------->HSFB2a(2)          ------>NtERF2  <-------MYC3 <----------DOF2  <---------   aaaatgctctttctatgtttcagaagatgcatgaagatagacctgtgcctcccaatgagtacacgtttgctagtgtctttaaagcatgttctgctttggc  8950000  Previous    Next  AGI:  At4g15720.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G23330.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70991.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 8949458    to: 8951538    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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