Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        --------->ZAT2                                                      --------->At4g35610                                                      --------->O2                                                      --------->TGA1a                                                      <---------TGA1a                                                  <-----------HVH21                     <-----------HVH21                                                 <---------MYB46(3)                     <-----------TGA1                                          <------MYB83<---------ZAT2                   <---------ANAC46                                          <------MYB46(1)                              --------->TGA1a                                         <---------AtMYB61                             <---------TGA1a                                         --------->MYB46(2)                            <---------bZIP60(1)                                         --------->MYB111(1)                           ==============                                         --------->MYB59                               --------->bZIP60(1)                                      --------->TOE2(3)                                <---------O2                                    <---------TOE1(3) <---------O2                     --------->O2                                    <---------TOE2(3)--------->MYB111(1)             <---------ANAC58                       <---------ANAC46  --------->MYB52(2)                          <---------ANAC58                       ----------->GT1--------->TOE1(3) --------->ALFIN1             <---------ANAC46                       <---------ANAC58 <---------MYB55(1)                         <-----------HVH21              <---------At4g35610  <---------DOF5.7(2)<---------At4g35610 --------->ANAC58  ---------              --------->At4g35610--------->DOF5.7(2)<-----------RAV1(2)   --------->ANAC58  <--------  <---------GLK1(2)    <---------ANAC58<---------MYB52(1)               --------->CCA1(2) <----------   tgtggaatctcagagcagctagtttgggtgaaatggttaacgttaggtcgatggtcaggtgggagtcgaatgagagacgacatcgtgtcgcgtcaggtct  8892200                                 --------->ARR14(2)                                               ---                            --------->MYB52(1)                            --------->ANAC55(2)   <----                           --------->ARR14(2)                        --------->ARR11(3)       ------- ==============================bZIP_DOF                              <---------ARR11(3)      <------- >At4g35610         ---------->DOF2                       <---------MYB46(3)       ------->TEIL ----- -At4g35610 ----------->HVH21    <---------ARR14(2)   <------ZmHOX2a(1)   <---------ANAC46--------->MYB46(3) -RAV1(2) <---------REM1(1)<---------ARR14(2)<----------DOF2    --------->ANAC46  <---------CCA1(2)   ctctagtcgatgttgtaacagggaaagaagaaacggttctacgagtgcttcaacgaggagttgttcacgaagttctacgtgtttgtatctcaaccgttga  8892300         ------->TEIL       --------->ZAT14       <---------ZAT14       <---------ZAT18  <---------ANAC46  <---------ANAC58  <---------ANAC58 --->ZmHOX2a(2)                                        <---------ARR14(2) -----ARR11(3)                --------->YAB1           --------->ARR14(2)                       ----- -->WRKY12       <---------At4g35610                <---------TOE2(3)                       <-------- --MYB52(1)      --------->At4g35610     <---------ZAT14                                 ------->TEIL ---->ARR11(3)  ----------->RAV1(1)      --------->ZAT14      <------ZmHOX2a(1)       <---------ATHB12   tcttgcctgtgcaccttgcagcagtagcaccatcagaaactactaaactgtttcaaggattcgaggattacaagttgaattggattcaatgaatgtgatt  8892400                                               --------->ANAC58                                               --------->ANAC58                                               --------->ANAC46                                        <-----------GT1                                        --------->YAB1                                     --------->YAB1                                     <---------ICU4                                    <---------AHL20(2)                                --------->AHL20(2)                                 --------->ZAT6                              ----------->GT1 ------->GAMYB                      <-----------GT1  --- ---->AHL20(2)               <---------HSFB2a(2)                                 --------->MYB52(1)-- -YAB1--------->ARR11(3)     --------->HSFB2a(2)--------->LBD16          ----------->GT1        <----   aaacatgtgatattgaaacagtattgaagttcgagtaaataataacaacgcgcaattcaaatgcaaacgattgtatggagaattaactgtaagaaattcg  8892500                                                                     --------->YAB1                                                                     --------->TOE1(3)                           --------->ARR11(3)                        --------->TOE2(3)                           <---------AHL20(1)      ------>NtERF2    <---------YAB1 -------->GT1             <---------CCA1(2)        ---------->ID1  <---------ARR11(3)              <- ------->At5g28300     <-------TEIL            <-----------GT1     --------->ARR11(3)          <----- -----LBD16         <------ZmHOX2a(1)     <---------AHL20(1)<---------MYB59             ------>ZmHOX2a(1)   cggtaaaaaaactgaaattataggattcatatattgggccttagtatattttcggcccattaccaaaattatcttaaacaagtttgagtcctaaaccctt  8892600                                     ------>NtERF2                                     *TSS                                    --------->RAP2.3(2)                                    --------->RAP2.3(3)                  --------->ABI4(1) --------->DEAR3(1)                           <---------GLK1(1)              --------->REM1(1)    --------->ORA47(2)                            --------->GLK1(1)          --------->At4g35610     --------->LBD16                             --------->LBD16     --------->ARR14(2)           ------>NtERF2                    <---------ARR11(3)     <---------ARR14(2)   <-----------GT1                          --------->ARR14(2)    <-----------HVH21 <---------MYB52(1)<----------DOF2            --------->ARR11(3)   --------->LBD16------>NtERF2   <---------ATERF1(1)              <---------ARR14(2)          <----- <---------LBD16 --------->DEAR3(1)--------->RAP2.3(1)      ----------->GT1  --------->HSFB2a(2)    - ----------GT1<---------ALFIN1   --------->ANAC46       ------>NtERF2  ------>ZmHOX2a(1)---------->ARF1 -----DOF2<---------At4g35610    --------->DEAR3(1)    ----------->HVH21     <---------HSFB2a(2)    <   ttctccggttacagctacaccgccgttttctctctccgccgtcttttctcttcttctccgactggtaaaaatcctctctccagaactctggtctcccgtt  8892700                                            <---------At4g35610                                            --------->At4g35610                                      <---------ARR11(3)  --------->ANAC55(2)  <---------AHL20(2)             --------->HSFB2a(2)  <-----------HVH21 ----MYB52(1)                    <---------HSFB2a(2) --------->ANAC46 -------->AHL20(2)           <---------ANAC58        --------->WOX13(1) ---------AHL20(2)           <---------ANAC58    <---------CCA1(2)   atatatatatgctcgtctacattctccaattgcttctcgagttcttagctcatatcagtcacatgttgttctctgtaaattcaattccctaatttcaatt  8892800                    --------->DAG2             <---------MYB46(3)             <------MYB46(1)             <------MYB83                 <-------TEIL             ----------->GT1           <------MYB83            <---------MYB46(3)         <------MYB46(1)            <---------AtMYB61         <---------TOE2(3)           <---------MYB52(1)         --------->MYB59                        <---------AHL20(2)          <-------GAMYB           --------->ATHB12----------->GT1            --------->AHL20(2)         <-----------RAV1(1)     <---------AHL20(2)                       <----------DOF2     <------   tgaaattttctctgttggtgaaaaggctctgctatttgattaggttgatgcatagtaattcgatttcgaaactctgcttttaattccatagactatataa  8892900                               <---------YAB1                               --------->ICU4                      <---------ANAC58                      --------->ANAC55(2)                      <---------ANAC55(2)                      <---------ANAC58                    <-----------GT1                                                                --          --------->YAB1   <---------WOX13(1)                                             <---------ARR14(2)         <---------YAB1  <---------WRKY18(1)                                              --------->ARR14(2)   --------->ICU4----------->GT1<---------ICU4          <---------YAB1                    --------->GLK1(2) ---------->DOF2 --------->ANAC58          --------->YAB1   ---------->DOF2              <---------GLK1(2) ---AHL20(2)     --------->ANAC58 <---------YAB1  <---------YAB1                 <-------TEIL  ------   tggaaaagatgatgataacaagttacttgactgatgattatacaatcacattatgcttatgctaaagtttttttttttgtatgttcatgtagaatctgtg  8893000                                                        --------->ANAC58                                            <-----------------AGL1                                            <------ZmHOX2a(2)                                         <---------ANAC58     <---------HSFB2a(2)                               <---------ANAC46         --------->ANAC58       <---------LBD16         <---------ANAC58  <---------ICU4                <---------At4g35610 --------->GT1                 <---------ANAC58 <---------ATHB51    >>>>>>>>>TBF1                   - ----->HVH21      ---------->DOF2        <---------ANAC58     --------->HSFB2a(2)  <---------MYB52(1)   aaggtgaatttcggagttgagaaagagagattagcgtgtaatggcgatcgataatggcaagcttcaagaagaagaagcctcatctgttactcgattctat  8893100  Previous    Next  AGI:  At4g15563.1    Description:  unknown protein Range:  from: 8891784    to: 8892392    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g15570.1    Description:  tRNA-splicing endonuclease positive effector-related. similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT4G30100.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45123.1); similar to regulator of nonsense transcripts 1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD62206.1); similar to putative component of a tRNA splicing complex [Oryza sativa (japonica cultivar-group)] (GB:AAO23082.1); contains domain DNA2/NAM7 HELICASE FAMILY (PTHR10887); contains domain no description (G3DSA:3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540); contain Range:  from: 8892637    to: 8898997    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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