Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             --------->ATERF1(1)                                                                                          <---------ATERF1(1)                                            --------->At4g35610                           ------>NtERF2                                        <---------STY1(2)            <---------ANAC58     --------->ABI4(2)       --------->At4g35610              --------->STY1(2)            <---------ANAC46   --------->RAP2.3(1)     <-----------RAV1(2)     --------->ANAC58                        <---------ANAC58  --------->LBD16 ------>ATHB51               --------->ANAC58      <---------bZIP60(1)                --------->DEAR3(1) -------ICU4             --------->ANAC58   <---------ZAT2   <------ZmHOX2a(2)       --------->ATERF1(1) ------ATHB1             --------->ANAC46   <---------At4g35610   --------->ALFIN1   --------->DEAR3(2) ------>ATHB12           --------->ANAC58   --------->ZAT2  <---------ARR11(3)       --------->MYB46(3) ------ATHB51    --------->DAG2         --------->ZAT2      --------->ARR11(3)     --------->ARR14(2) ------AHL20(2) ---------->DOF2       ------->GAMYB--------->bZIP60(1)             <---------ARR14(2)   taattgaacaggtgaacataaagtcatacgcaaacaacaacgagctagctgtgatgccacaagatcgagtggctcgtttggaatggaaccggcgctacct  8862400                                                                                 <------ZmHOX2a(2)                                                                                 --------->CCA1(2)                                                                                --------->ARR11(3)                                                                                <---------ARR11(3)                                                                 --------->HSFB2a(2)                                                                 <---------HSFB2a(2)                                                                 =======================HOX2a_HOX2a        <------ZmHOX2a(1)                                        ------>ZmHOX2a(1)------>ZmHOX2a(2)     <---------HSFB2a(2)                                         --------->LBD16--------->AGP1     --------->HSFB2a(2)                       <---------ALFIN1  ========================HOX2a_HOX2a     <---------HSFC1(1)                       --------->MYB46(3)<---------LBD16 <---------AGP1      <     >>>>>>>ZML2                    --------->YAB1     ---------->DOF2         --------->RVE1(1)  <--     --------->HSFC1(1)          --------->WOX13(1) --------->LBD16         ---------->DOF2       <--  <---------ARR14(2)            <---------AHL20(2) --------->LBD16     >>>>>>>>>TBF1              ---   tgcagttctaggagttgagaacgatagactctattcaattagactccaaacacccgagaaagttttcctggaagaagaaaaagatctaagaagagtcatg  8862500                                                                                 <---------ANAC46                                                                                 <---------ANAC58                                                                                 <---------ANAC58                            <---------At4g35610                               ---------->ID1                            --------->At4g35610                             <-----------RAV1(1)            <---------HSFB2a(2)                                         --------->ARR11(3) -------TEIL--------->HSFB2a(2)   <---------GLK1(2)                     <---------ARR11(3)         <- -------GLK1(2)    --------->CCA1(2)                                    --------->GLK1(2)          <- -------ARR14(2)  --------->ARR11(3)  <---------YAB1                   --------->CCA1(1)    <-------- ------>ARR14(2)  <---------ARR11(3) --------->TOE2(3) <---------YAB1  --------->RVE1(1) <----------DOF2   gattcgtttagggtcgagaagatttagaagagctcacattctcaatgtgaatttcttcttattccaaaccaaaaaatcttgttgcttactacttttgatt  8862600        <---------AHL20(2)        --------->AHL20(2) ------>MYB46(1)                          <---------YAB1                  ---------->DOF2 ------>MYB83--------->ARR11(3)         <---------ICU4          <---------ZAT18 --------MYB46(2)                      <---------YAB1           --------->ZAT14 --------MYB59   <---------YAB1        --------->ICU4           --------->ZAT18             --------- -YAB1 --------->AHL20(2)       <---------At4g35610             <---------ZAT14  ----------->GT1   accaaactaataaatgattttgattcaaattttgagatgtcattatgacatagttgagaaatattgtgcactaccaaaaagaagagtaaaccagtcgtaa  8862700                                           --------->ANAC55(2)                                           <---------ANAC55(2)                                        --------->ARR14(2)                                        <---------ARR14(2)                                   --------->MYB52(1)                                 <---------YAB1                               -------->ATHB1                               <---------ICU4                                               <--------                               --------->ATHB51                                            ----------                              --------->AHL20(2)         <----------DOF2     <---------ANAC58   -----                              <---------AHL20(2)        <---------MYB52(1)   <---------ANAC58   -----                              --------->ICU4     <---------ARR11(3)          >>>>>>>>>>WRKY18--------                              <---------ATHB51  <---------At4g35610        >>>>>>>>>WRKY18<----------                 --------->TOE2(3)<-----------GT1--------->ARR11(3)        <---------WRKY18(1)<------ -->GT1------->TEIL  <------------CBF   <---------MYB52(1)      <----------DOF2     ---------->DOF2   attgaaatgaaccggttaaccaaaattgagaaattattaccggttatgtaagctcttcgttttttggtttaaggccttgacttgacaaaagccctcaccg  8862800                               --------->ARR14(2)                               <---------ARR14(2)                             <------NtERF2 ---------->DOF2            --------->LBD16 -ALFIN1                   <---------ANAC58 ->HVH21                   <---------ANAC58            --------->ANAC46 ---->LBD16                <---------ANAC46      <---------MYB46(3) ------>GT1               <---------LBD16       <--------P                   <-----------HVH21 ->MYB52(1)             <---------DEAR3(1)     <-------GAMYB         <-----------TGA1 -HVH21            ------>NtERF2              <---------MYB46(3)     <-----------HVH21   <---------At4g35610 ---LBD16    *TSS --------->DEAR3(1)       <-----------RAV1(1)  ---------->DOF2      <----------DOF2<   gaaaaaagaagtagaagacgacgacgatggcgggatttgagagctatgtggttgttcacaacatagcaaagcgtcacaacgtcggaactttagctcgtag  8862900                                          <---------MYB52(1)                                         --------->At5g28300                                         --------->LBD16                                       <------NtERF2                                      ----------------------->TaNAC69(2)                                     <---------ETT(2)                     <---------At4g35610--------------------->WRI1                 <---------ANAC46  <-----------HVH21              ----------->HVH21    <-------GAMYB                                                    <            <---------ANAC58      <---------SPL7                                          <---------LBD16            <---------ANAC58      <---------DEAR3(2)                                    --------->ARR14(2)          <---------ANAC58        <---------MYB46(3)                                    <---------ARR14(2)          <---------ANAC58       <---------DEAR3(1)                       <---------GLK1(2)--------->ANAC46         <---------AtMYB61     <-----------HVH21                         <---------At4g35610---------       <----------DOF2       ------>ZmHOX2a(1)     --------->ANAC46      --------->At4g35610------>NtERF2 ---------ALFIN1 <---------bZIP60(2) <---------DEAR3(1)    <---------MYB52(1)          <---------MYB52(1)   cgccactgcctttggtgtgacggagctaatcctcgtcggtcgccgtgatttcaacgccttcggtagtcatggttcagcttctcacatccgtttccgccat  8863000                       <---------MYB52(2)                  --------->ANAC58                                    <----------DOF2                  --------->ANAC58                                   <---------HSFC1(2)                  --------->ANAC46                                   --------->HSFC1(2)     ----------------------->TaNAC69(2)                              --------->HSFB2a(1) -----------GT1--------->ZAT2    <---------ARR11(3)                  <---------HSFB2a(1) >LBD16        <---------ZAT2    --------->ARR11(3)       ---------->DOF2 <----------DOF2   tttcactctctcatcgaagctcgcaactatctcaaggtcttaatttcactctgaattacacaaagtttggaactttctttatgggtcttatctactagat  8863100                                                                            <---------TOE2(3)                                                                        <-------GAMYB                                                                       <---------ANAC46                                                                       <---------DEAR3(1)                                                                      ------>NtERF2                                                                     --------->LBD16                                                                     <---------RAP2.3(1)                                                                    <---------RAP2.3(2)            <-                                                                    <---------RAP2.6(2)            --                                                                    <---------DEAR3(1)            <--                                                <------ZmHOX2a(1)  <---------LBD16              <----                                             <------ZmHOX2a(1)    <-----------RAV1(1)           <----                                       --------->ATHB12         --------->CCA1(2)         <---------At4g35610                                      --------->ICU4  --------->ATHB12<------NtERF2 --------->At4g35610                     <----------DOF2 <---------WOX13(1)        --------->ARR14(2)   <---------At4g35610   ttgaatgtgttcaaagtttgagtctttttgtttgtttggattgattaggaggagaaagattgcgatatatgcggcgttgagattgcagatggagcttctg  8863200                                                               ------>ZmHOX2a(2)                                                              <------ZmHOX2a(2)                                                              --------->ARR14(1)                                                              --------->CCA1(2)                                                             --------->AGP1                                                             <---------AGP1                                                             <---------ARR14(2)                                                             --------->ARR14(3)                                                             --------->ARR14(2)                                                             <---------ARR11(3)                                                             --------->ARR11(3)                   <--       ------->TEIL                              ----------->GT1                      <-----------RAV1(1) ------GAMYB                     <---------ARR14(2)          <---------ARR14(3)     <---------ANAC58 ------->At5g28300               <-----------ARR10       ---------->DOF2            <---------ANAC46< -------MYB46(3)              <---------ANAC58  <---------TOE2(3)                   <---------ANAC58< -----At4g35610   ---------->DOF2--------->ARR14(2)    --------->YAB1  <-----------GT1--------->ALFIN1 -----LBD16  ------>ZmHOX2a(1)<---------ANAC58--------->ICU4--------->RVE1(1)  <----------DOF2 <-----   cggttaatgaacatcctttcaaaagaaacactgcgtttcttctcggtaatgaggtaatcaaaagatctggtttttacaaaacttttgagtgttgcaactt  8863300  Previous    Next  AGI:  At4g15510.1    Description:  photosystem II reaction center PsbP family protein. Identical to PsbP-related thylakoid lumenal protein 1, chloroplast precursor [Arabidopsis Thaliana] (GB:O23403); similar to PPL1 (PSBP-LIKE PROTEIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G55330.1); similar to unknown [Populus trichocarpa] (GB:ABK94442.1); contains InterPro domain Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124); contains InterPro domain Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683) Range:  from: 8860614    to: 8862663    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g15520.1    Description:  tRNA/rRNA methyltransferase (SpoU) family protein. similar to hypothetical protein [Vitis vinifera] (GB:CAN73835.1); contains InterPro domain tRNA/rRNA methyltransferase, SpoU; (InterPro:IPR001537) Range:  from: 8862813    to: 8864616    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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