Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              --------->AHL20(2)                                            <---------AHL20(1)                                            <---------AHL20(2)                 <xxxxxxxxxxxxxxxxsmallRNA(s)             <---------GLK1(1)             --------->ICU4           =================================HOX2a_HOX2a           <------ZmHOX2a(1)           --------->At5g28300           <---------TOE2(3)           ================================HOX2a_HOX2a       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            ----------->GT1       <---------ANAC46               ----------->GT1   xxxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->LBD16                 ------>ZmHOX2a(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ATERF1(2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->ATERF1(2)             <------ZmHOX2a(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->DEAR3(2)              --------->ARR14(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <---------LBD16                 <---------ARR14(2)  --------->ZAT18                            <--  --------->MYB52(1)---------->DOF2<---------ARR11(3)  <---------ZAT14      ---------->DOF2--------->AHL20(2)  <---------DOF5.7(2)              --------->ARR11(3)  --------->ZAT14 ---------->DOF2    --------->YAB1  <---------At5g28300        --------->ALFIN1<---------AHL20(2)      <---------YAB1--------->GLK1(1)   cagttaccggcgaggaatgccgaaaaccgaagtggaagatcggtaatttttttttagtgcagagaaaaattaagaaagaaaagagaaacccataaaaata  8860200                                                                                          <----------                                                                                    <---------YAB1                                                                                   <---------AHL20(1)                                                                              --------->AHL20(2)                                                                              <---------YAB1                                                                              <---------AHL20(2)                                                                           --------->AHL20(1)                             --------->YAB1           <---------ARR11(3)   <---------ARR11(3)                             <---------ICU4           --------->GLK1(2)    --------->ARR11(3)                            --------->ICU4            --------->ARR11(3)   --------->AHL20(2)                <---------AHL20(2)                   --------->CCA1(1)     <---------AHL20(1)                <---------YAB1                       --------->RVE1(1)     <---------AHL20(2)             --------->AHL20(1)        --------->ANAC58         --------->CCA1(2)  --------->AHL20(2)             --------->AHL20(2)        --------->ANAC58        --------->AHL20(1)  <---------AHL20(2)             <---------AHL20(1) --------->YAB1 ----------->GT1 <---------AHL20(2) --------->YAB1 -------ZAT6 <---------ARR11(3)<---------YAB1--------->YAB1    <---------AHL20(1)<---------YAB1   gagatagtttctcaaaatattatttgcataatcatcatattaagcaaacatgaaaaaatctctaatatatgaaacaatatattattataattttactatc  8860300                                  --------->AHL20(2)                         <---------WOX13(1)                       <---------AHL20(2)                       --------->ATHB12         <--------HAHB4                      <---------AHL20(2)        --------->YAB1                      --------->AHL20(2)        <---------ICU4                  --------->ARR11(3)           <---------ATHB12                  <---------AHL20(1)         <-----------GT1  <---------AHL20(2)                  --------->AHL20(2)        <---------AHL20(2)--------->AHL20(1)                <----                  --------->AHL20(1)  <---------AHL20(2)      <---------AHL20(1)             --------                  <---------ARR11(3)  --------->AHL20(2)     <---------AHL20(2)        <-----------GT1                  <---------AHL20(2) <---------AHL20(2)      --------->AHL20(2)     <---------ICU4    <-----------GT1  <---------AHL20(2) <---------YAB1       --------->YAB1--------->YAB1<---------YAB1 -GT1        --------->AHL20(2)   <---------AHL20(2)<---------AHL20(2)     --------->AHL20(2)--------   tattttttacacaaatgaaatatattaattggctaaaaaattatttttaatcattttatcaaattatattctaacaattaaaacaaaaattactattgta  8860400                                                --------->AHL20(2)                                                <---------AHL20(2)                                               --------->AHL20(2)                                               --------->AHL20(1)                                               <---------AHL20(1)                                               <---------AHL20(2)                                            <---------AHL20(2)                                            --------->AHL20(1)                                            --------->AHL20(2)                                           <---------AHL20(2)                               <--------                                           --------->AHL20(2)                               ---------                                --------->ARR11(3)                                          ---------                                <---------AHL20(1)                                          ---------                        ----------->GT1    <---------ATHB51                         ----------->GT1 -------GT1       <---------MYB46(3)       --------->ICU4                          --------->ZAT6 ->YAB1       <---------TOE1(3) --------->AHL20(1)                                <---------YAB1 --->GT1      <---------TOE2(3) <---------ARR11(3)  <<<<<<<<<<GT-3b <---------AHL20(2)     <---------AHL20(2)   acatgactatttgttcaaggttgttctcgttaaaaatatttcgaaataatttatttttctttgaacatatttagttgattttttatcagtaaaattattt  8860500                                         <---------AHL20(1)                                     <---------AHL20(2)                                  <---------AHL20(2)                                 <---------AHL20(2)                             --------->AHL20(2)                             <---------AHL20(1)                             <---------ARR11(3)                             --------->AHL20(1)                             --------->ARR11(3)     ------>ZmHOX2a(1)       <---------AHL20(2)                             <-----------ARR10  ---------->ID1            <---------AHL20(2)                         ------------>CBF <-----------GT1            --------->AHL20(2)      <---------ZAT14    <---------YAB1            <--- -AHL20(2)              --------->AHL20(2)   <-------TEIL             --------->TOE2(3)          <--- >ATHB51 --------->YAB1 <---------YAB1--------->AHL20(2)          <---------CCA1(2)         <-------- >AHL20(2)      <-----------GT1  --------->AHL20(2) --------->ZAT14  --------->YAB1 ---------->DOF2 < >ATHB12<---------ATHB12----------->TBP  --------->ARR11(3)      ------->TEIL  <XXXXXXXXXXXXXXXXXXXXMIR826   gtttttcctaatgatatataactcttataaataaattaaataatatatacatactgtagttccaacgtatatcatcaatatctatccaaagttggatttt  8860600                 ------->GAMYB                --------->MYB46(3)               -------->P               --------->ANAC58               --------->ANAC58               ------>MYB83               ------>MYB46(1)            <---------MYB59            --------->MYB46(3)           --------->ANAC58        --------->DOF5.7(2)      --------->bZIP60(1)     <---------TOE1(3)     <---------TOE2(3)    <---------DOF5.7(2)   ----------->TGA1   --------->WRKY12  <---------WOX13(1) <---------ANAC58--------->YAB1 <-------GAMYB------>MYB46(1) <---------ANAC58--------->TOE2(3) ------ANAC58 ------>MYB83 ------ANAC58 *TSS -GLK1(2)  --------->ANAC58                                                 --------->At4g35610    <- ---------MYB46(3)   <---------GLK1(2)                                      <---------At4g35610    <-   cttggttgacgttacccaaccaaaattctcaattttcccagtggattactcttacagtccaaagtttcaatttttctgagcttcaaaaatccactctaat  8860700              <---------ANAC46              <---------ANAC58   <-----------GT1                                             <-------              <---------ANAC58--------->YAB1          --------->GLK1(2)                   <----------DOF2    <---------At4g35610    --------->YAB1            <---------GLK1(2)                   ------>ZmHOX2a(2)    --------->At4g35610    --------->ANAC55(2)       <---------ARR14(2)                --------->ARR11(3)  --------->REM1(1)        <---------ANAC55(2)  ----------->RAV1(1)                    <---------ARR11(3) --------ANAC58  --------->ARR14(2)  ---------->DOF2 --------->ARR14(2)             --------->HSFB2a(2) --------ANAC58  <---------ARR14(2)  --------->MYB52(1)         <---------ATHB12    <---------HSFB2a(2)   ggcttcatctgcatttgcgtttccttcttacataataaccaaaggagcctcaacagattctttcaaatcaacttctctgtcttcttctcgatctttggtt  8860800               <---------ZAT18               --------->ZAT18             <---------At4g35610        --------->AtLEC2  <---------GLK1(1)  --------->GLK1(1) --------->ARR14(2) <---------GLK1(2)                <----------DOF2 <---------ARR14(2) --------->ZAT14    <---------DEAR3(1)                       --------->GLK1(2) --MYB46(3)  --------->At4g35610--------->At4g35610      <----------DOF2       <---------GLK1(2)   acagatttccatgtaagctcacttctctcttctctgcttcatcggtggaaattgtgagactttgtagttgcccatttgatagaatctagaattgaataat  8860900                                                       --------->ATHB12                                       <----------DOF2 <---------AHL20(2)                                      <---------DAG2  --------->AHL20(1)                                     --------->HSFB2a(1)                                    ------->TEIL      <---------AHL20(1)                                --------------->AtSPL8--------->AHL20(2)                              <---------ARR14(2)      <---------AHL20(2)                              --------->ARR14(2)--------->TOE2(3)                             <---------GLK1(1)  --------->YAB1  --------->AHL20(2)   gggtttacttcatttttgacacaagtctaacaaatccgaacctttttctatgttaatttattgaaattgaatatgaattagacctatataagtttgcctc  8861000                                                                                               ------                                                                                              -------                                                                                              <------                                                                                    <------NtERF2                                                                                    <---------At4g35610                                                                       --------->ARR14(2)     <------                                                                       <---------ARR14(2)   ---------                                                                       ------>MYB46(1) ---------->DOF2                    --------->AHL20(2)                                 ------>MYB83 --------->At4g35610             --------->LBD16                             --------->LBD16          --------->ZAT18             ------>NtERF2               --------->HSFB2a(2)  ------>ZmHOX2a(1) --------->ARR14(2)            <---------LBD16    <----------DOF2         <---------LBD16--------->WOX13(1)  <---------LBD16           <---------LBD16   <---------At4g35610 <---------CCA1(2)<-----------GT1 <---------ZAT18   ttcggttctaatttccggcgaaaaaaatgacagcttttgttctccagacccatctcttccggtcctaaataccaatctgccaagtccgctaaaccggaat  8861100  Previous    Next  AGI:  At4g15510.1    Description:  photosystem II reaction center PsbP family protein. Identical to PsbP-related thylakoid lumenal protein 1, chloroplast precursor [Arabidopsis Thaliana] (GB:O23403); similar to PPL1 (PSBP-LIKE PROTEIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G55330.1); similar to unknown [Populus trichocarpa] (GB:ABK94442.1); contains InterPro domain Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124); contains InterPro domain Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683) Range:  from: 8860614    to: 8862663    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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